Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi6g1v0026800 |
Transcript ID | LotjaGi6g1v0026800.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | INO80 complex subunit C; TAIR: AT4G38495.1 chromatin-remodeling complex subunit; Swiss-Prot: sp|Q8BHA0|IN80C_MOUSE INO80 complex subunit C; TrEMBL-Plants: tr|I3SJK2|I3SJK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0026800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4719579..4723410) extracted from Lotus japonicus Gifu genome v1.2.
GTGCTCATAATTTTTCCTTAGCTTAAGAACCCAACTCTAAAAGTTTGGATTCGATATGCTCTAAGCAGAGAAACAATTTT AGGTGGGCCCCACATTATTTATTCTTTCCAGCGTGTTTTCTAATCTCAAGAGATTGGTCTAATGGAGCATAATAGAGTCT CGTACCTGACAAATCACAGATTGAATCCACTAGTCTCTTTGAAGTAAGGTAAATGTAAGTCTTCTATAAATACTCTTTCA ACTCTACAACTTCTACTTCCTTAGACTAGGATATCATCCCCTTGCCCTACATTTTTTAACCAAAAATAATAAATAGTAAT TTGTGTTTTCTCTCCTCTTTATTTCTTATCCTTTTCTTTCATTTACTTTTCTTTTCTATAGAACCAAACGAAACGAAGCC TGGACCAACCCGGTCCTTGTTGAAACTTGAAAGTGAAACTATTGAAATACTCGAACCCAAAATAAAATTAAAGATAAAAT AAAGTGGCGAATGTATGAATTGAAGATTTTCAATTGTTGAGGCGAAAACACCGCCACCACCTGCGAACGCCGATTAGGAA AGGTAACACAGTTGGTATTTTCCTTTTTTAGCATGCTCGTATTATTTAGGTTTACTACGTTGTTATTATTAGGTGTTTCT TTCTACCAGAAACCAATTACTGAAAATTTTTGTTATTTTTTTGTGTGTGTGTTTATGATGAAGGGTGATAAGATGGAAGC AGAGGTAGTGGACGCTGAGCTAGTGCTGCCGAATTACCTCAGTTTTAAGAGAGTTCAGATGCATGAGAAATACCCTAAAG GCCAATCTAGAGGGAGGCACTGGAAACATCTTAAGCAGATTATTCAAGCTGAGAATTATCAGAATTACCCTCCTGATCAA CCCAATTGTGAGATTTCACTCACACCCATTATCTGTTTATGCTTTGTTATGGAAAATTGTTTTGTAGTTTTGTTTCTTGG AAGTTTTGGTGGGTTGTTTAAGAACAATTTGTGTTGTTGGTTGAACTTTAAGTGAGAAGTCTTACTATCAGAAGTAGAGT GATGGTTTAGTTTGCTATTTTGGCCATAAATTTGAAAGAGATTAGTTGGAGGCTATTTGAAATTTTGAATGGCTGGGGGT AGGGTAGGGTTTTAAATTGTGGATCCTGTTGCGTTGCGGAGTTGCAGACAAATGCATTTTGATGCAGCCGTCATTGTAGG ACGTGATGCCGTTGTCCAAAATTCGGTTGCAATTGCGGGTGTGGACCGCAATTTAAGGGTGGCAGGGAAATTGGTTGTAT CAGGATCCCTGAATTTTCTGTGTGATAGACTGGTTGCATGATTTCTCTTTAGTTATTACTCATGAATGTTTAAGTACAGT CTATCTCCAATGTAAAGAGAGATGGAGCTACCACTGTGCTACTGGTTACTCCTTTTTTCTCTAAGGATATTTCTTCTTTT ATATTAATAAGAAAAAAATAATGGAAGAATTTTTAATTGTTCAAACTCAGTGCTGGAGACTCATAGTCCAATTCCACTTT TCCCCCATGTTATGTTTACTATTCATGTCAAAGCATTTAATTGTTTATCTTTTTTATTGGTTGGATTGTCTTGCAGATGT CAATATTGAGTCACCCCCCTCCATGCATCCCTGCAAGAGAATTTGTGATATTACAGGCTATGAGGTATGTAGTTATGTTG ATTATTCTTCTTGAGTGGTATTTTGCTGAATACGGTTATTATTATTAGCCATTACACTTCTTAGAATAAGTTTTAGCAAA ATAACTCTGGTTTACAAGGACAGAAAGTGGTTTGCATTTGTGAAACAAGTTTGCAAAATTTTGATTTAAAAGGCCATTCT CACCCTTTTATGTAGAAACTATGAAACTAATTATGTTCCATCTATTTCTTGTCACTGGAAATACTTTAACATCTTATTGA ATCTATATAGCATATAAATCTCAAATAATCACACACATCTCGCTTTTGTGCTAACTTTCAAAATTTGTGATTTTATCTTC ATGTTACGTTGAAAATTTAGCTTACTTTGTCTTCTTATGGCTTAGTGCTAAGAACTATTGATTCTCATCTTAGGATGCTC GACAAACTACTCAAAAGTAAACATTGGTGCAGTTCCTTGTTCGGCAATAATACCTATTAGCTAGCATAGCCTTTTTATTT TCCCGACAGACTAGTCAAAATTAAACATCTCTGCAGTTCCTTGTCGTTCAACAGTAATAGCTATTGGCTAGCATAAGCTG TTTATTTTCCCCATCTTCCTGCTCAGAACTTTGAACACAACAGCTACCTTTAGAGTTTAGACTAATTCATTTCAGCCAAG CTAATAAAATATCAAGTGAACAATAGGAGATATGAGACATTGCATTTGAATGCCTACAACATTTACTTTAATTGTCCATG TTGCTTTTGATAAATGATCTCATTGTCAATAATATTTCTCAAAATCTGGTTTCTGATCGAGCTCAATGGTTTAGTGTGGT CCATATAGCCGACCTCATTTAGTGGGATAAAGTTTTTGTTGTTGTCCATGGTGCTTTTATCTTCAGCAGTTGCAACTCAA TATAGCAGCCATTGAATTTTTCACTGCTGAGATGAAGCTCTTTAATGTTCTACTATCTATGTTTCAGACACACATCACTA AGATTGTTTAAAGGGTTGAATCTGTGTTAGCGTATTATGTTCATTTTTCAATATTCTGAGCTTTAGCTTTCTTAGTTTGA TAAGTACAGGGAAGATAAGACATGATTCATTGTACATCACATCAGATTCAGAATTTTGCACTGAAATGTGTTCAACCTGA CCTAGTTTAAAAGCACAGGTCTGGTTGAGGTTTAGATCTTTCATCTTTGTTGATACTCGTGGGAAATTAAGAATTTTTCT AGTTTGGAAATAGGTGAATATTGTGAGGAATTTCTATAGTGCGTTATCTATCTTCTCTTTGTAATTCTCTTTCTCCTTGA TCCAAAGACAGAACGCTCCAAATGAATTGAATAAGGAATACTTGATTGACTCAACTGCCTGAATAATATCTGATATGTCT CTCATCTTATCAAGTCGTAGTGCTTTAACTTGATTTCTTTGTCGTCTATAGCTTGGTTTTGGTTTGTTTAGATGTCACGC CAATGTCTTTTCAACATCTTCTTATTATGCAGGCTTAGCTTAAATATAGTTTAATCTTTTTAACTGAATTGGCTACATGC TAAAAAAACTTACATATGGAATTTGTTTATGGATTTTATATTCGCTTGGTGTGGATTACCTTAGAATTTGGGTTAGACTC TACCTCAAAAGCTAGCTTAGGGTGAGAATTGCTCTGCCCTATAGTAAAGCATAGTTTGGCCATATCTCTAGTCAATGTTG GACCTGAACAAAATGTCTCTCTTTTTATTTAATTAATTGAGGATGTTTATTAGTATTCTTATACTAGAGAACTAATTAAT TAGTTTACCCTGCAGGCACCTTACTATGATCCTAGGACTACCCTCCGATATGCAAACACCGATGTTTTCAAGATCATCAG GGCGCTTCCTAATGATTATGTGCAGAGATACCTAGCTCTAAGAAATGCAGCAGTAGTTCTCAAGTAGTTTTATGGCTTTC CTGACTTATGAGACACCTTATTCTTATCCCTTCATTCTTACTTTAACAACTTTTTAGGATGTGTTTACCATGTATAATGT CGCTCTTTGTCCCTAATTTGGTCTTGTCTGATATTTTGTAAATTACAAGATTTCTATTGATAAATAGCATTGCCAATTTA TTAATTACTAATCATGATGTTGCACATACTAAATCGAAGACTTCATTCTATTCAGGAACTGTTTGGTTCGAC
CDS sequence (LotjaGi6g1v0026800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAGAGGTAGTGGACGCTGAGCTAGTGCTGCCGAATTACCTCAGTTTTAAGAGAGTTCAGATGCATGAGAAATA CCCTAAAGGCCAATCTAGAGGGAGGCACTGGAAACATCTTAAGCAGATTATTCAAGCTGAGAATTATCAGAATTACCCTC CTGATCAACCCAATTATGTCAATATTGAGTCACCCCCCTCCATGCATCCCTGCAAGAGAATTTGTGATATTACAGGCTAT GAGGCACCTTACTATGATCCTAGGACTACCCTCCGATATGCAAACACCGATGTTTTCAAGATCATCAGGGCGCTTCCTAA TGATTATGTGCAGAGATACCTAGCTCTAAGAAATGCAGCAGTAGTTCTCAAGTAG
Protein sequence (LotjaGi6g1v0026800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAEVVDAELVLPNYLSFKRVQMHEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDQPNYVNIESPPSMHPCKRICDITGY EAPYYDPRTTLRYANTDVFKIIRALPNDYVQRYLALRNAAVVLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 124 | 123 | 2.0E-57 | ||
SMART | 73 | 102 | 30 | 6.9E-12 | ||
Pfam | 74 | 102 | 29 | 6.8E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. | ||
Cellular component | Ino80 complex | A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity. |
Expression pattern of LotjaGi6g1v0026800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…