Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0063500.2

Overview

Field Value
Gene ID LotjaGi6g1v0063500
Transcript ID LotjaGi6g1v0063500.2
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RKS8|A0A0S3RKS8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:11727134..11732810) extracted from Lotus japonicus Gifu genome v1.2.

CTTATAGATTCGATAAGCTCTCCTGTTAGGTGGTGGGTTCTACAGAGGGTAGCTAAGATGGTTAGATGAGGTTGTTTAGA TGATGGAAGTTAATTAATTGTTGTTGGAAATTGGAATTTCGAATTAGATGTCGTATATCTTTTTATAATAATTGTGTGCC TTAAGGTATACCAGTCTCATGTTATAATATAGTACTCCTTTAGAAAATTGTAACGTTGCTTGGATAAATTACTAATACTA TGAATATGTATTTGCTGGTTCTTCTATAAGAACTTGATGAAAGATATATACATATATAATATAATCTTTAATATTTGTTA CATTGAATAAATTTGGGAAGTTTTGAATTTCCTCTAATGGTAGGATGAGGGAAATTAGGAATTCCTAGAGCCACATACCA CAGGTAATGGAGATAAGGAGAGAGCAGCAGAGAGAACAAGGAGCTTGTTTTCACAGTTGGGTCCATGGAACCCACCTTCT GGACCAAGAGTGATGGTGCTCCAATCCCTATTTATGAAAATTATATTAGACTTACCAAATTAAATTCTGTTTCTTTTTCA GTCATAATGCATACTAAATTTATCTCGACCTGACAATACTCGTCATAATTTCATCAAAACTGAAAATTGAATCTATTGGC TTGTCTTTATTAAACAGTACCTCAATTATTAGTATAATTGTTTGTCAATTTTTTTTGTATAATTATTGGTTACAAAACAT CAAATATTAACACTTATCTTTTTTATCCAAGACAAGATGATCCTCCTATCCATGTGTGGCAATAAACTCTCCTTAACACT GGTGGAGCTGGAAAAAGCTTCAATCCTAACCTTAAGGTCCATGTCCAAGACTAACAGTGACAGAGAATTGGCGGGCACCA TATGCCTGCCACGTGGCAGCATAGGTAATCTTCATTGTGTGGATGTCAGGGTTTTAAGACCAATCCTGTTGTTACACTCT TACCCATCAGCTAAATATAAGCCACCTGCTCTGCTCATAAACTTGCATTGAATTTGCTTGAAGAAAGTACCTCTCCTCTT TCTTTCAGTTCTTTGTACCACAACACCTTCATCAATGGCTGCCTCTGTTTCCACTATTGGAGCTGTCAAAACTCCAGTAT GTCATGCTTTTCCATATTTCCATCTTTGTTACACTTAGCACTTGTTTAATTACTATAGCCCTTAAGGTCTTATAATTTGA TATGCATGTTTAGATAGTTTAATATGGACCAACAAGGTTTTGGTAGTGATAAGCAGGCTAGACTCCAGTAAAAGTGAGAA CACAAGTTCGAAGTCTGAAAATGTTATTTGTTGGGAGGGACATCTGTAGTTTCCCGAATAGGTGGGGACACCCGTCAAAG ACAAAAAGAAAAAAAAAATTAGTTCAATAAGCCTTGTGTGTGTGTTTGAGAAATGACATGCCCAAATCAAGTGATTTAAA TTGTATTATTACTATGTTTTACTATAACAGCATATAGTACAGACCGAGTTCAAAGGATTGTTGCTATTAGGCTGGTATGA AGTGGCTTAACAATCTAGTAATGAATTTATAGATTCAATAGTAGAAATGATGCATGATATAAGATGTTGGATATTGAAAG TGTGTAAAAATCTAACAATGATTCAGAATATATATAGGGAATTGTTAAGTTTTTTTAGTTAAGCTTAATCCCACTTTTGC TCCCCTATTTTGGACTATGTGTAATTTCTCTTAGCTTTAGCTTTTGCTTCTGTCCAAACATGCATTTACTCCCCCAATAG TTTTCTAACAAATTTAGTCACTCAACTTTTCAATTGTTGCAAATCAAGTCTCTCTATCATTATAATTCTGCTTCAAACTT TCAAATTCTAGTTTTCTAAGAAAAATCTTCATAAATTGAATCAATTTAATCATCATAGACGCTACTGTGATGTATATTGC AGTTGAGCTTGAATGGTTCTGGAGCTGGAGCTTCAGTTCCCAGTTCAGCTTTCTTTGGCAGCAGCTTGAAGAAAGTTATC TCAAGGCTCCCCAACACCAAGGTTTCCAATGGAAGCTTCAAAATTGTTGCTGCAGAGATTGATGAGAGCAAGCAGACTGA CGGAGACAGATGGAGGGGTCTGGCCTACGATATTTCCGATGACCAGCAAGACATCACAAGAGGGAAGGGCATGGTTGACC CCCTCTTCCAAGCTCCACAGAATGCCGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACATTAGCACCGGTCTTCGC CAGTGAGTAACACATGCTGTGAATTTTAACTCAAATTGTGTTGTTTGCTTTTGAATGATGAAGCTTCTTTTGAATTTTAA ACTTATTACGTGGTTATTATGGTGTTTCAGGTACAACTTTGACAACACCGAGGGTGGATTTTACATTGCTCCCGCTTTCA TGGACAAGCTTATTGTTCACATCACCAAGAACTTCTTGACCCTGCCCAACATCAAGGTATGTAATTAGCATACATGAATG AGTTAATGAACAAAACTGCAGTATGACTTTAGCAGAATTGGGTGAAACATTCAATACTTTCATTGTTTTTTGCAGGTTCC TCTCATTCTTGGTATCTGGGGGGGCAAAGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTCCAAAAGATGGGAATCA AGTGAGTACTTTCTCTACTAGGCCCTCTTAAATTTAACTCCATGCACCCTGCTAGTACATAGATATGAAGTATTGAACCT CACAACTTTGAAATTAAAACTCAACAACTGATACGTAATGTGTTCCAATGGAATAACATATTATATATGTTATGCTACAT AATCTGCTACAAGTGTTTAATGGCTAGACATAATGAGTGTATGTTATATCATATTGCCATATGATAGTTAGATTAAATTC AAAGAAAACAAAAAAGATAATGAAATATGATAAGACTATTAGAGTATGAGAGGGTGTCAAAGAAGATGCGAGAACTGTAT AACGACGGGCTTAAAAGATAAGACTAGTATAGTGCTCCAACACTACACATTGACCCAAAACCTTAAAGCAATGAGTCTGT GGGTATAACGAGATTCAAAGTGAATCTAGAAGAAAGAAATTGCAGAGAACTGCAGAAATTTTACTGAATGAATGAGTCTT TCATTACTTGCTCAACTCAGTTCTATGAGCTAATATACATGTACAAAATGTAACTAACAATGTGAAAGTAATGCTAACTA ACTAATATCAAACTTGATTAGTTAGATTACTACTCACTCTAATTAACAATTAACTCTATACTTAAGAGTAACAACTCACT TAATTGCTAACTATCGCCATCTTTTAATCAATGTTATGTTGAACTTATTACTCACATATATATATATGTATGTGTAAAAC AGTTTACATTGTCGGTGTATACTAATTAAATTCAACTTCTAATGTCTGTGCGATGTTGCAATTACATTCCAGCCCCATCA TGATGAGTGCTGGAGAGCTGGAAAGTGGAAATGCAGGAGAACCCGCGAAGTTGATCAGGCAGAGATACCGCGAAGCTGCT GATATAATCAGGAAGGGAAAGATGTGTGCTCTCTTCATCAACGATCTTGATGCAGGTGCAGGTCGTATGGGTGGAACCAC CCAGTACACTGTCAACAACCAGATGGTTAACGCCACCCTCATGAACATTGCTGATAACCCCACAAATGTGCAGCTCCCCG GCATGTACAACAAGGAAGACAACCCCCGTGTGCCCATCGTTGTCACCGGTAACGATTTCTCAACACTGTATGCTCCTCTC ATCCGTGACGGGCGTATGGAGAAGTTCTACTGGGCGCCTACAAGGGAAGACCGCATCGGTGTCTGCAAGGGGATTTTCCA AACTGACAATGTGTCTGAAGAGGCTGTTGTCACGATTGTTGACACCTTCCCTGGTCAATCCATCGGTAAGTACCCTGCAA CGTCAGCTTATTTTTACACAGAATCAATTCTAACACCCAGAAGCTAGTCAGAGAAGCTTCTACTAAGAATTGGTTTGATT TTAGAATCAATTATAGAAGAATTTCCAAATATGTATATGCGGTACTAACACTATACTGCCTTTTGTGGTGCTGTAGATTT CTTTGGTGCATTGAGGGCTAGAGTGTATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGATTTGATTGGAA AGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGTATTTGAGCAGCCCAAGATGACCCTGGAGAAGCTCTTGGAGTATGGT AACATGCTTGTGCAAGAACAAGAGAATGTGAAGAGAGTCCAGTTGGCTGACAAGTACTTGAATGAAGCTGCTCTTGGTAA TGCTAATGACGATGCTATCAAGAGGGGAACTTTCTAAGCCTTCATTGGAGGTTTGCATCTAGCTTTATATCCCTCTAACT AGGACAATTATATTAAGTTCAAACAAAACTTGGTCTGAGATCTTGAGTTAATTGTTTTCTGTGCAGGCAAGTAAATATTC CCGTGAAGGTTGTAGTGTTCCAATGCCTCAACTTTGATCCAGGTGCTAGAAGTTGTGATGCAATCTTCTTGTAACATTCT TAGCTTTGTCAATGTATTGGGTGGAAGGAGAATGCCCAAGTTTGAATGTTTTTTTCATGTTGAACTGTCTTCATGTAAAA TTTTGTGTACAATGTTAAATTGAATTTGGTGTCTTTTTTTCCTGCCTATACTGGAGGTTTCTTTTCTACATTTAATTATG TTTGCCATGAGAAGATATCAAGTGAGTGCTAAGGATATGATGAATTTGGGGACAAAGTCTGAGTTCTGAGCTCAAGGACA TATTATATACACTCACCATTTTGATTCGAATTAATACCACCAGCCATCTCAGAGATTGGAGTGAGGATTGTGTGAAATGT GGTGGAGTAATGGTTGTGTGAATGGTGGTGGAGCGAGGGTTGAATTGTGTGAGCATTTATAGGCAAATGGATCTGAAGAA ACATTCAAAGAAGAAAAGGTTGTGTAAAGAATTCAACCTATAACCCTAGATCTACAAAGCTAATCCCAACTTCAAATCAA AATGTAAATGACAGATGCATAAAAATTGGATGAACTGAAGATGACAATGGGGAATGGTTGCAAACAGAGTACGAAATCTC TCAAAAAAGGCACATCTAATCAATGAAATCAGATAAACAATTCGAAAAAAGGACGAAATTAGGAGGAAACGTATGGGAAG AGCTAAACCACGTAATGGTGAGGTTCACAGAAGAACTGTTATAGAGGCTTACAACGCAATGGTTGATGGAGCGACTTGAT GGCCAACGTCGAGGAAGCCATGGGAAGGTGCCGAAGATCGTGGGAAGTAGATCTTTAGAGCCGAGTGACGTCGAACGCAG TTGGCACGGGGAAATCAGTGACGTTGCTACAGTTGGAGAAGCGAGAAATTGGGGAAAAAGGACGAAATTTACAGAGGAAG GGTGGCTGAAGGGACATGGGGTCGGTGCTTCCCCATGGAAACCGGGGAGCGGAGGCGGCGGCTCTGCCAACCTCACATGT TCGAGAAGAGAGAGAAACAGGTAGGGTTGTGTGATCTGTGATTATTTTATTCAACGGCCCAGATTAAAAGATGGAAAAAG CAGTAATAGATTTCAACTAAAAAAATAAAACTAAATTTGAAAAAGTCACAAAAGCAGTACACATGTCGAAATGCCAT 

CDS sequence (LotjaGi6g1v0063500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCCTCTGTTTCCACTATTGGAGCTGTCAAAACTCCATTGAGCTTGAATGGTTCTGGAGCTGGAGCTTCAGTTCC CAGTTCAGCTTTCTTTGGCAGCAGCTTGAAGAAAGTTATCTCAAGGCTCCCCAACACCAAGGTTTCCAATGGAAGCTTCA AAATTGTTGCTGCAGAGATTGATGAGAGCAAGCAGACTGACGGAGACAGATGGAGGGGTCTGGCCTACGATATTTCCGAT GACCAGCAAGACATCACAAGAGGGAAGGGCATGGTTGACCCCCTCTTCCAAGCTCCACAGAATGCCGGAACTCACTATGC AGTCATGAGCTCTTATGAGTACATTAGCACCGGTCTTCGCCAGTACAACTTTGACAACACCGAGGGTGGATTTTACATTG CTCCCGCTTTCATGGACAAGCTTATTGTTCACATCACCAAGAACTTCTTGACCCTGCCCAACATCAAGGTTCCTCTCATT CTTGGTATCTGGGGGGGCAAAGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTCCAAAAGATGGGAATCAACCCCAT CATGATGAGTGCTGGAGAGCTGGAAAGTGGAAATGCAGGAGAACCCGCGAAGTTGATCAGGCAGAGATACCGCGAAGCTG CTGATATAATCAGGAAGGGAAAGATGTGTGCTCTCTTCATCAACGATCTTGATGCAGGTGCAGGTCGTATGGGTGGAACC ACCCAGTACACTGTCAACAACCAGATGGTTAACGCCACCCTCATGAACATTGCTGATAACCCCACAAATGTGCAGCTCCC CGGCATGTACAACAAGGAAGACAACCCCCGTGTGCCCATCGTTGTCACCGGTAACGATTTCTCAACACTGTATGCTCCTC TCATCCGTGACGGGCGTATGGAGAAGTTCTACTGGGCGCCTACAAGGGAAGACCGCATCGGTGTCTGCAAGGGGATTTTC CAAACTGACAATGTGTCTGAAGAGGCTGTTGTCACGATTGTTGACACCTTCCCTGGTCAATCCATCGATTTCTTTGGTGC ATTGAGGGCTAGAGTGTATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGATTTGATTGGAAAGAAGCTTG TGAACTCAAAGGAAGGACCTCCAGTATTTGAGCAGCCCAAGATGACCCTGGAGAAGCTCTTGGAGTATGGTAACATGCTT GTGCAAGAACAAGAGAATGTGAAGAGAGTCCAGTTGGCTGACAAGTACTTGAATGAAGCTGCTCTTGGTAATGCTAATGA CGATGCTATCAAGAGGGGAACTTTCTAA 

Protein sequence (LotjaGi6g1v0063500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAASVSTIGAVKTPLSLNGSGAGASVPSSAFFGSSLKKVISRLPNTKVSNGSFKIVAAEIDESKQTDGDRWRGLAYDISD DQQDITRGKGMVDPLFQAPQNAGTHYAVMSSYEYISTGLRQYNFDNTEGGFYIAPAFMDKLIVHITKNFLTLPNIKVPLI LGIWGGKGQGKSFQCELVFQKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRMGGT TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF QTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNML VQEQENVKRVQLADKYLNEAALGNANDDAIKRGTF 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 435 435 4.6E-270
SignalP_GRAM_POSITIVE 1 24 24 -
PANTHER 1 435 435 4.6E-270
Gene3D 124 307 184 1.9E-41
SUPERFAMILY 141 339 199 1.52E-20
Pfam 163 304 142 4.4E-14
Gene3D 308 420 113 4.5E-48

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0063500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…