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LotjaGi6g1v0063500.3

Overview

Field Value
Gene ID LotjaGi6g1v0063500
Transcript ID LotjaGi6g1v0063500.3
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7G550|A0A1J7G550_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:11728248..11730931) extracted from Lotus japonicus Gifu genome v1.2.

ATCAATTTAATCATCATAGACGCTACTGTGATGTATATTGCAGTTGAGCTTGAATGGTTCTGGAGCTGGAGCTTCAGTTC CCAGTTCAGCTTTCTTTGGCAGCAGCTTGAAGAAAGTTATCTCAAGGCTCCCCAACACCAAGGTTTCCAATGGAAGCTTC AAAATTGTTGCTGCAGAGATTGATGAGAGCAAGCAGACTGACGGAGACAGATGGAGGGGTCTGGCCTACGATATTTCCGA TGACCAGCAAGACATCACAAGAGGGAAGGGCATGGTTGACCCCCTCTTCCAAGCTCCACAGAATGCCGGAACTCACTATG CAGTCATGAGCTCTTATGAGTACATTAGCACCGGTCTTCGCCAGTGAGTAACACATGCTGTGAATTTTAACTCAAATTGT GTTGTTTGCTTTTGAATGATGAAGCTTCTTTTGAATTTTAAACTTATTACGTGGTTATTATGGTGTTTCAGGTACAACTT TGACAACACCGAGGGTGGATTTTACATTGCTCCCGCTTTCATGGACAAGCTTATTGTTCACATCACCAAGAACTTCTTGA CCCTGCCCAACATCAAGGTATGTAATTAGCATACATGAATGAGTTAATGAACAAAACTGCAGTATGACTTTAGCAGAATT GGGTGAAACATTCAATACTTTCATTGTTTTTTGCAGGTTCCTCTCATTCTTGGTATCTGGGGGGGCAAAGGACAAGGAAA ATCTTTCCAATGTGAGCTTGTCTTCCAAAAGATGGGAATCAAGTGAGTACTTTCTCTACTAGGCCCTCTTAAATTTAACT CCATGCACCCTGCTAGTACATAGATATGAAGTATTGAACCTCACAACTTTGAAATTAAAACTCAACAACTGATACGTAAT GTGTTCCAATGGAATAACATATTATATATGTTATGCTACATAATCTGCTACAAGTGTTTAATGGCTAGACATAATGAGTG TATGTTATATCATATTGCCATATGATAGTTAGATTAAATTCAAAGAAAACAAAAAAGATAATGAAATATGATAAGACTAT TAGAGTATGAGAGGGTGTCAAAGAAGATGCGAGAACTGTATAACGACGGGCTTAAAAGATAAGACTAGTATAGTGCTCCA ACACTACACATTGACCCAAAACCTTAAAGCAATGAGTCTGTGGGTATAACGAGATTCAAAGTGAATCTAGAAGAAAGAAA TTGCAGAGAACTGCAGAAATTTTACTGAATGAATGAGTCTTTCATTACTTGCTCAACTCAGTTCTATGAGCTAATATACA TGTACAAAATGTAACTAACAATGTGAAAGTAATGCTAACTAACTAATATCAAACTTGATTAGTTAGATTACTACTCACTC TAATTAACAATTAACTCTATACTTAAGAGTAACAACTCACTTAATTGCTAACTATCGCCATCTTTTAATCAATGTTATGT TGAACTTATTACTCACATATATATATATGTATGTGTAAAACAGTTTACATTGTCGGTGTATACTAATTAAATTCAACTTC TAATGTCTGTGCGATGTTGCAATTACATTCCAGCCCCATCATGATGAGTGCTGGAGAGCTGGAAAGTGGAAATGCAGGAG AACCCGCGAAGTTGATCAGGCAGAGATACCGCGAAGCTGCTGATATAATCAGGAAGGGAAAGATGTGTGCTCTCTTCATC AACGATCTTGATGCAGGTGCAGGTCGTATGGGTGGAACCACCCAGTACACTGTCAACAACCAGATGGTTAACGCCACCCT CATGAACATTGCTGATAACCCCACAAATGTGCAGCTCCCCGGCATGTACAACAAGGAAGACAACCCCCGTGTGCCCATCG TTGTCACCGGTAACGATTTCTCAACACTGTATGCTCCTCTCATCCGTGACGGGCGTATGGAGAAGTTCTACTGGGCGCCT ACAAGGGAAGACCGCATCGGTGTCTGCAAGGGGATTTTCCAAACTGACAATGTGTCTGAAGAGGCTGTTGTCACGATTGT TGACACCTTCCCTGGTCAATCCATCGGTAAGTACCCTGCAACGTCAGCTTATTTTTACACAGAATCAATTCTAACACCCA GAAGCTAGTCAGAGAAGCTTCTACTAAGAATTGGTTTGATTTTAGAATCAATTATAGAAGAATTTCCAAATATGTATATG CGGTACTAACACTATACTGCCTTTTGTGGTGCTGTAGATTTCTTTGGTGCATTGAGGGCTAGAGTGTATGATGATGAAGT GAGGAAGTGGATTTCTGGTGTTGGTGTTGATTTGATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGTATTTG AGCAGCCCAAGATGACCCTGGAGAAGCTCTTGGAGTATGGTAACATGCTTGTGCAAGAACAAGAGAATGTGAAGAGAGTC CAGTTGGCTGACAAGTACTTGAATGAAGCTGCTCTTGGTAATGCTAATGACGATGCTATCAAGAGGGGAACTTTCTAAGC CTTCATTGGAGGTTTGCATCTAGCTTTATATCCCTCTAACTAGGACAATTATATTAAGTTCAAACAAAACTTGGTCTGAG ATCTTGAGTTAATTGTTTTCTGTGCAGGCAAGTAAATATTCCCGTGAAGGTTGTAGTGTTCCAATGCCTCAACTTTGATC CAGGTGCTAGAAGTTGTGATGCAATCTTCTTGTAACATTCTTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0063500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGACCCCCTCTTCCAAGCTCCACAGAATGCCGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACATTAGCAC CGGTCTTCGCCAGTACAACTTTGACAACACCGAGGGTGGATTTTACATTGCTCCCGCTTTCATGGACAAGCTTATTGTTC ACATCACCAAGAACTTCTTGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGGGGCAAAGGACAAGGA AAATCTTTCCAATGTGAGCTTGTCTTCCAAAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGCTGGAAAGTGG AAATGCAGGAGAACCCGCGAAGTTGATCAGGCAGAGATACCGCGAAGCTGCTGATATAATCAGGAAGGGAAAGATGTGTG CTCTCTTCATCAACGATCTTGATGCAGGTGCAGGTCGTATGGGTGGAACCACCCAGTACACTGTCAACAACCAGATGGTT AACGCCACCCTCATGAACATTGCTGATAACCCCACAAATGTGCAGCTCCCCGGCATGTACAACAAGGAAGACAACCCCCG TGTGCCCATCGTTGTCACCGGTAACGATTTCTCAACACTGTATGCTCCTCTCATCCGTGACGGGCGTATGGAGAAGTTCT ACTGGGCGCCTACAAGGGAAGACCGCATCGGTGTCTGCAAGGGGATTTTCCAAACTGACAATGTGTCTGAAGAGGCTGTT GTCACGATTGTTGACACCTTCCCTGGTCAATCCATCGATTTCTTTGGTGCATTGAGGGCTAGAGTGTATGATGATGAAGT GAGGAAGTGGATTTCTGGTGTTGGTGTTGATTTGATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGTATTTG AGCAGCCCAAGATGACCCTGGAGAAGCTCTTGGAGTATGGTAACATGCTTGTGCAAGAACAAGAGAATGTGAAGAGAGTC CAGTTGGCTGACAAGTACTTGAATGAAGCTGCTCTTGGTAATGCTAATGACGATGCTATCAAGAGGGGAACTTTCTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0063500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVDPLFQAPQNAGTHYAVMSSYEYISTGLRQYNFDNTEGGFYIAPAFMDKLIVHITKNFLTLPNIKVPLILGIWGGKGQG KSFQCELVFQKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRMGGTTQYTVNNQMV NATLMNIADNPTNVQLPGMYNKEDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFQTDNVSEEAV VTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRV QLADKYLNEAALGNANDDAIKRGTF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32429
1 345 345 5.9E-232 –
PANTHER
PTHR32429:SF8
1 345 345 5.9E-232 –
Gene3D
G3DSA:3.40.50.300
34 217 184 1.1E-41 –
SUPERFAMILY
SSF52540
51 249 199 6.82E-21
IPR027417
Pfam
PF00004
73 214 142 2.6E-14
IPR003959
Gene3D
G3DSA:1.10.8.1070
218 330 113 2.9E-48 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0063500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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