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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0063500 |
Transcript ID | LotjaGi6g1v0063500.6 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7G550|A0A1J7G550_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11728454..11730925) extracted from Lotus japonicus Gifu genome v1.2.
TTAATCATCATAGACGCTACTGTGATGTATATTGCAGTTGAGCTTGAATGGTTCTGGAGCTGGAGCTTCAGTTCCCAGTT CAGCTTTCTTTGGCAGCAGCTTGAAGAAAGTTATCTCAAGGCTCCCCAACACCAAGGTTTCCAATGGAAGCTTCAAAATT GTTGCTGCAGAGATTGATGAGAGCAAGCAGACTGACGGAGACAGATGGAGGGGTCTGGCCTACGATATTTCCGATGACCA GCAAGACATCACAAGAGGGAAGGGCATGGTTGACCCCCTCTTCCAAGCTCCACAGAATGCCGGAACTCACTATGCAGTCA TGAGCTCTTATGAGTACATTAGCACCGGTCTTCGCCAGTGAGTAACACATGCTGTGAATTTTAACTCAAATTGTGTTGTT TGCTTTTGAATGATGAAGCTTCTTTTGAATTTTAAACTTATTACGTGGTTATTATGGTGTTTCAGGTACAACTTTGACAA CACCGAGGGTGGATTTTACATTGCTCCCGCTTTCATGGACAAGCTTATTGTTCACATCACCAAGAACTTCTTGACCCTGC CCAACATCAAGGTATGTAATTAGCATACATGAATGAGTTAATGAACAAAACTGCAGTATGACTTTAGCAGAATTGGGTGA AACATTCAATACTTTCATTGTTTTTTGCAGGTTCCTCTCATTCTTGGTATCTGGGGGGGCAAAGGACAAGGAAAATCTTT CCAATGTGAGCTTGTCTTCCAAAAGATGGGAATCAAGTGAGTACTTTCTCTACTAGGCCCTCTTAAATTTAACTCCATGC ACCCTGCTAGTACATAGATATGAAGTATTGAACCTCACAACTTTGAAATTAAAACTCAACAACTGATACGTAATGTGTTC CAATGGAATAACATATTATATATGTTATGCTACATAATCTGCTACAAGTGTTTAATGGCTAGACATAATGAGTGTATGTT ATATCATATTGCCATATGATAGTTAGATTAAATTCAAAGAAAACAAAAAAGATAATGAAATATGATAAGACTATTAGAGT ATGAGAGGGTGTCAAAGAAGATGCGAGAACTGTATAACGACGGGCTTAAAAGATAAGACTAGTATAGTGCTCCAACACTA CACATTGACCCAAAACCTTAAAGCAATGAGTCTGTGGGTATAACGAGATTCAAAGTGAATCTAGAAGAAAGAAATTGCAG AGAACTGCAGAAATTTTACTGAATGAATGAGTCTTTCATTACTTGCTCAACTCAGTTCTATGAGCTAATATACATGTACA AAATGTAACTAACAATGTGAAAGTAATGCTAACTAACTAATATCAAACTTGATTAGTTAGATTACTACTCACTCTAATTA ACAATTAACTCTATACTTAAGAGTAACAACTCACTTAATTGCTAACTATCGCCATCTTTTAATCAATGTTATGTTGAACT TATTACTCACATATATATATATGTATGTGTAAAACAGTTTACATTGTCGGTGTATACTAATTAAATTCAACTTCTAATGT CTGTGCGATGTTGCAATTACATTCCAGCCCCATCATGATGAGTGCTGGAGAGCTGGAAAGTGGAAATGCAGGAGAACCCG CGAAGTTGATCAGGCAGAGATACCGCGAAGCTGCTGATATAATCAGGAAGGGAAAGATGTGTGCTCTCTTCATCAACGAT CTTGATGCAGGTGCAGGTCGTATGGGTGGAACCACCCAGTACACTGTCAACAACCAGATGGTTAACGCCACCCTCATGAA CATTGCTGATAACCCCACAAATGTGCAGCTCCCCGGCATGTACAACAAGGAAGACAACCCCCGTGTGCCCATCGTTGTCA CCGGTAACGATTTCTCAACACTGTATGCTCCTCTCATCCGTGACGGGCGTATGGAGAAGTTCTACTGGGCGCCTACAAGG GAAGACCGCATCGGTGTCTGCAAGGGGATTTTCCAAACTGACAATGTGTCTGAAGAGGCTGTTGTCACGATTGTTGACAC CTTCCCTGGTCAATCCATCGGTAAGTACCCTGCAACGTCAGCTTATTTTTACACAGAATCAATTCTAACACCCAGAAGCT AGTCAGAGAAGCTTCTACTAAGAATTGGTTTGATTTTAGAATCAATTATAGAAGAATTTCCAAATATGTATATGCGGTAC TAACACTATACTGCCTTTTGTGGTGCTGTAGATTTCTTTGGTGCATTGAGGGCTAGAGTGTATGATGATGAAGTGAGGAA GTGGATTTCTGGTGTTGGTGTTGATTTGATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGTATTTGAGCAGC CCAAGATGACCCTGGAGAAGCTCTTGGAGTATGGTAACATGCTTGTGCAAGAACAAGAGAATGTGAAGAGAGTCCAGTTG GCTGACAAGTACTTGAATGAAGCTGCTCTTGGTAATGCTAATGACGATGCTATCAAGAGGGGAACTTTCTAA
CDS sequence (LotjaGi6g1v0063500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGACCCCCTCTTCCAAGCTCCACAGAATGCCGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACATTAGCAC CGGTCTTCGCCAGTACAACTTTGACAACACCGAGGGTGGATTTTACATTGCTCCCGCTTTCATGGACAAGCTTATTGTTC ACATCACCAAGAACTTCTTGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGGGGCAAAGGACAAGGA AAATCTTTCCAATGTGAGCTTGTCTTCCAAAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGCTGGAAAGTGG AAATGCAGGAGAACCCGCGAAGTTGATCAGGCAGAGATACCGCGAAGCTGCTGATATAATCAGGAAGGGAAAGATGTGTG CTCTCTTCATCAACGATCTTGATGCAGGTGCAGGTCGTATGGGTGGAACCACCCAGTACACTGTCAACAACCAGATGGTT AACGCCACCCTCATGAACATTGCTGATAACCCCACAAATGTGCAGCTCCCCGGCATGTACAACAAGGAAGACAACCCCCG TGTGCCCATCGTTGTCACCGGTAACGATTTCTCAACACTGTATGCTCCTCTCATCCGTGACGGGCGTATGGAGAAGTTCT ACTGGGCGCCTACAAGGGAAGACCGCATCGGTGTCTGCAAGGGGATTTTCCAAACTGACAATGTGTCTGAAGAGGCTGTT GTCACGATTGTTGACACCTTCCCTGGTCAATCCATCGATTTCTTTGGTGCATTGAGGGCTAGAGTGTATGATGATGAAGT GAGGAAGTGGATTTCTGGTGTTGGTGTTGATTTGATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGTATTTG AGCAGCCCAAGATGACCCTGGAGAAGCTCTTGGAGTATGGTAACATGCTTGTGCAAGAACAAGAGAATGTGAAGAGAGTC CAGTTGGCTGACAAGTACTTGAATGAAGCTGCTCTTGGTAATGCTAATGACGATGCTATCAAGAGGGGAACTTTCTAA
Protein sequence (LotjaGi6g1v0063500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDPLFQAPQNAGTHYAVMSSYEYISTGLRQYNFDNTEGGFYIAPAFMDKLIVHITKNFLTLPNIKVPLILGIWGGKGQG KSFQCELVFQKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRMGGTTQYTVNNQMV NATLMNIADNPTNVQLPGMYNKEDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFQTDNVSEEAV VTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRV QLADKYLNEAALGNANDDAIKRGTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 345 | 345 | 5.9E-232 | – | |
PANTHER | 1 | 345 | 345 | 5.9E-232 | – | |
Gene3D | 34 | 217 | 184 | 1.1E-41 | – | |
SUPERFAMILY | 51 | 249 | 199 | 6.82E-21 | ||
Pfam | 73 | 214 | 142 | 2.6E-14 | ||
Gene3D | 218 | 330 | 113 | 2.9E-48 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0063500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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