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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0229800 |
| Transcript ID | LotjaGi6g1v0229800.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT3G13920.1 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1; TrEMBL-Plants: tr|V7CCL1|V7CCL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53865954..53868114) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTTAATGCTATTTCGTTTTATCTTGCAGTATGGCTGGACTCGCACCGGAAGGCTCGCAGTTTGATGCAAAGCATTAT GATACCAAGATGAGTGAATTGTAAGAGCTTTTGATGTTTATCCTTTTTTCTTTCTTGTTCTCCACAATGAAGTATGCAAT TCTTGTTTGATTGGCATCCAGTTACAGTGGTTTTAAGCACGTTTTTGTCTAGTTCTGGAAACATGCTTACAACGGGATTC TGATGTTATTTATTTGATTTTAATAACTGATGGGTGTGCTTTCAGGCTTACTACTGAAGGACAGGACTTCTTCACCTCCT ATGATGAGGTTTATGAGAGTTTTGATGCTATGGGCCTTCAAGAGAACTTGCTGAGAGGCATTTATGCATATGGTAGGTTT AACTTTATTTGTCGCCATCACTACTTTTCTTTCTTCAATTTTTAAACCCAAAGTTTTTTTCCATAATTTCATGTGATGGC AATTGAAAATTTATATTTCTGATTATTTGGGACACCTTGGAATTCTTCCTGGTTTATAGTTCAGTTATAACGGCAGCATA TCACTTTTATCATGCTGTCTGGCTCTATTCTGCTGTATTTTTGTGCAAATCATTGTGTTAATTGTCTTGCTTCTGTTATT GGATTTCATGGTCGAATGTTTAAACTTGTTTCTTATGTGTTTTAGGTTTTGAGAAGCCCTCAGCTATTCAGCAAAGAGGA ATAGTTCCATTCTGCAAGGGACTTGATGTTATACAACAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCTGTTCTGG GATTTTGCAGCAACTTGACTACAGTTTGACTGAATGCCAAGCCTTGGTTCTAGCACCAACTCGGGAGCTTGCTCAGCAGA TTGAGAAAGTTATGCGAGCACTTGGAGACTATCTAGGTGTCAAGGTGCATGCTTGTGTTGGAGGTACCAGTGTTCGTGAA GACCAACGCATTCTATCAAGCGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTTCGCAGGCAGTC ACTTCGACCAGATAACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTTAAAGATCAGGTGC TTACTGTTTTTACTTTGTTAGTTCCAGTGTTTATTTCATGTGGCTGAAAATACTCACCATGCATACTGTTTATTTAACAA TCATTTGTTTCAATTATTTAACTTTCGAAAATGATTCGTTGTGAGGAGTCAAGCCCAAATTGTTACTGTGTAGTTGGTTA ACTCTCTTATCCACTGCAAGTTTCTTCCTTGATGAACTATTTTATTTCCATATATCTAGTTCTGACAGTTTAAACCTTTT AATGGATTCTATTTATTTGAAGTTTCTTTTACTATCATTACGTAAGCTATAAGTTTGTAATAAGTCTGTTTTGATTATCT AGGCGAGTCAACTTTTCTTGGCCTATTGATTTGATGTTCTAAATGAATTTGTGTACAAATTCTTTAACCTTTATTTTATC ATCAGATCTACGATATATTCCAACTGCTGCCATCCAAGATTCAAGTTGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCT CTTGAAATCACCAGGAAGTTTATGAACAAACCTGTAAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATTAA GCAGTTTTACGTCAATGTTGAAAGAGAGGAATGGAAGCTCGATACACTCTGTGATCTTTATGAGACATTGGCAATCACTC AGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATTGGCTGACTGACAAGATGCGAAGCAGAGACCACACAGTCTCG GCAACCCATGGAGACATGGACCAGAATACCAGAGATATTATTATGCGAGAATTCCGTTCTGGGTCTTCCCGTGTTTTAAT CACTACTGATCTTTTGGCTCGTGGTATTGATGTGCAGCAAGTATCTTTGGTTATAAATTATGATCTCCCAACACAGCCTG AGAACTATCTCCATCGTATTGGTCGTAGTGGAAGGTTTGGGAGGAAAGGTGTTGCCATCAACTTTGTCACAAAGGATGAT GAAAGAATGCTGTTTGACATCCAGAAGTTCTACAATGTGGTAGTTGAGGAGCTGCCTTCAAATATTGCTGAACTACTTTG A
CDS sequence (LotjaGi6g1v0229800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCCTTCAAGAGAACTTGCTGAGAGGCATTTATGCATATGGTTTTGAGAAGCCCTCAGCTATTCAGCAAAGAGGAAT AGTTCCATTCTGCAAGGGACTTGATGTTATACAACAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCTGTTCTGGGA TTTTGCAGCAACTTGACTACAGTTTGACTGAATGCCAAGCCTTGGTTCTAGCACCAACTCGGGAGCTTGCTCAGCAGATT GAGAAAGTTATGCGAGCACTTGGAGACTATCTAGGTGTCAAGGTGCATGCTTGTGTTGGAGGTACCAGTGTTCGTGAAGA CCAACGCATTCTATCAAGCGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTTCGCAGGCAGTCAC TTCGACCAGATAACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTTAAAGATCAGATCTAC GATATATTCCAACTGCTGCCATCCAAGATTCAAGTTGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCTCTTGAAATCAC CAGGAAGTTTATGAACAAACCTGTAAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATTAAGCAGTTTTACG TCAATGTTGAAAGAGAGGAATGGAAGCTCGATACACTCTGTGATCTTTATGAGACATTGGCAATCACTCAGAGTGTCATT TTTGTGAACACCAGAAGGAAGGTTGATTGGCTGACTGACAAGATGCGAAGCAGAGACCACACAGTCTCGGCAACCCATGG AGACATGGACCAGAATACCAGAGATATTATTATGCGAGAATTCCGTTCTGGGTCTTCCCGTGTTTTAATCACTACTGATC TTTTGGCTCGTGGTATTGATGTGCAGCAAGTATCTTTGGTTATAAATTATGATCTCCCAACACAGCCTGAGAACTATCTC CATCGTATTGGTCGTAGTGGAAGGTTTGGGAGGAAAGGTGTTGCCATCAACTTTGTCACAAAGGATGATGAAAGAATGCT GTTTGACATCCAGAAGTTCTACAATGTGGTAGTTGAGGAGCTGCCTTCAAATATTGCTGAACTACTTTGA
Protein sequence (LotjaGi6g1v0229800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTRELAQQI EKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIY DIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREEWKLDTLCDLYETLAITQSVI FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL HRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVVEELPSNIAELL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 198 | 198 | 1.21301E-136 | – | |
| PANTHER | 1 | 362 | 362 | 7.5E-223 | – | |
| Gene3D | 1 | 204 | 204 | 3.0E-66 | – | |
| PANTHER | 1 | 362 | 362 | 7.5E-223 | – | |
| ProSiteProfiles | 1 | 24 | 24 | 9.154 | ||
| SMART | 15 | 212 | 198 | 7.7E-58 | ||
| Pfam | 21 | 182 | 162 | 4.8E-41 | ||
| ProSiteProfiles | 27 | 197 | 171 | 30.163 | ||
| SUPERFAMILY | 65 | 350 | 286 | 1.78E-75 | ||
| ProSitePatterns | 143 | 151 | 9 | - | ||
| Gene3D | 205 | 369 | 165 | 4.6E-58 | – | |
| ProSiteProfiles | 208 | 369 | 162 | 25.766 | ||
| CDD | 209 | 339 | 131 | 9.9738E-61 | – | |
| Pfam | 222 | 330 | 109 | 7.2E-29 | ||
| SMART | 249 | 330 | 82 | 1.5E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0229800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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