Domain Predictions — View

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cd17939

Source: CDD

Description

DEADc_EIF4A

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 19

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi3g1v0028100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|I3SKR0\|I3SKR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0028100	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF646 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi3g1v0028100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|I3SKR0\|I3SKR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0028100	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF646 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi3g1v0028100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|I3SKR0\|I3SKR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0028100	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF641 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi3g1v0028100.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.2 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|I3SKR0\|I3SKR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0028100	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PTHR24031 PTHR24031:SF641 SM00487 SM00490 SSF52540 cd17939 cd18787	18
LotjaGi3g1v0028100.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|I3SKR0\|I3SKR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0028100	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF646 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi3g1v0028100.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|I3SKR0\|I3SKR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0028100	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF641 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi3g1v0028100.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|I3SKR0\|I3SKR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0028100	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF646 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi3g1v0420900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|A0A151T9F2\|A0A151T9F2_CAJCA Eukaryotic initiation factor 4A-10; Found in the gene: LotjaGi3g1v0420900	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF641 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi3g1v0420900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|A0A151T9F2\|A0A151T9F2_CAJCA Eukaryotic initiation factor 4A-10; Found in the gene: LotjaGi3g1v0420900	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF641 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi3g1v0420900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41381\|IF4A8_TOBAC Eukaryotic initiation factor 4A-8; TrEMBL-Plants: tr\|A0A0R0FUV4\|A0A0R0FUV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0420900	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 NON_CYTOPLASMIC_DOMAIN PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF641 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00487 SM00490 SSF52540 SignalP-noTM cd17939 cd18787	26
LotjaGi3g1v0420900.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|A0A151T9F2\|A0A151T9F2_CAJCA Eukaryotic initiation factor 4A-10; Found in the gene: LotjaGi3g1v0420900	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF641 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi3g1v0420900.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|A0A151T9F2\|A0A151T9F2_CAJCA Eukaryotic initiation factor 4A-10; Found in the gene: LotjaGi3g1v0420900	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF641 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi3g1v0420900.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G54270.2 eif4a-2; Swiss-Prot: sp\|P41382\|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr\|A0A0R0FUV4\|A0A0R0FUV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0420900	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PTHR24031 PTHR24031:SF641 SM00487 SM00490 SSF52540 cd17939 cd18787	18
LotjaGi6g1v0229800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT3G13920.1 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp\|Q40465\|IF411_TOBAC Eukaryotic initiation factor 4A-11; TrEMBL-Plants: tr\|I1L1K7\|I1L1K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF621 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi6g1v0229800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT3G13920.1 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp\|Q40465\|IF411_TOBAC Eukaryotic initiation factor 4A-11; TrEMBL-Plants: tr\|I1L1K7\|I1L1K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF621 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi6g1v0229800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT3G13920.1 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp\|P35683\|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1; TrEMBL-Plants: tr\|V7CCL1\|V7CCL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF621 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi6g1v0229800.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT3G13920.1 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp\|Q40465\|IF411_TOBAC Eukaryotic initiation factor 4A-11; TrEMBL-Plants: tr\|I1L1K7\|I1L1K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF621 SM00487 SM00490 SSF52540 cd17939 cd18787	20
LotjaGi6g1v0229800.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT3G13920.4 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp\|Q40465\|IF411_TOBAC Eukaryotic initiation factor 4A-11; TrEMBL-Plants: tr\|I1L1K7\|I1L1K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800	Domains G3DSA:3.40.50.300 IPR000629 IPR001650 IPR011545 IPR014001 IPR027417 PF00270 PF00271 PS00039 PS51192 PS51194 PTHR24031 PTHR24031:SF621 SM00487 SM00490 SSF52540 cd17939 cd18787	18
LotjaGi6g1v0242500.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp\|P41380\|IF4A3_NICPL Eukaryotic initiation factor 4A-3; TrEMBL-Plants: tr\|A0A072V6Z3\|A0A072V6Z3_MEDTR DEAD-box ATP-dependent RNA helicase; Found in the gene: LotjaGi6g1v0242500	Domains G3DSA:3.40.50.300 IPR001650 IPR027417 NON_CYTOPLASMIC_DOMAIN PF00271 PS51194 PTHR24031 PTHR24031:SF57 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00490 SSF52540 SignalP-noTM cd17939 cd18787	17

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd18787	CDD	1	5.26