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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0240700 |
| Transcript ID | LotjaGi6g1v0240700.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q9ZPI1|SYKC_ARATH Lysine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1LZI3|I1LZI3_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi6g1v0240700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55232851..55238075) extracted from Lotus japonicus Gifu genome v1.2.
CTGACTGTGCCCTCTGATCCGGCAACTCTCTCCGCCGCACCGATGGAAGTTCCTTCCGAGCCACCGCCAGCAACCGCCAC CGGCGAAACCATTAGCAAGAAGTGAGTGCTCAGAATTTGACTTCACCACCATCACCATTGAATTGAATTGATTTTTGTTT GTTTGTTTTCTTCAATTTTCAGTGCACTGAAGCGGGAACTCAAGAACAAGCAGAAGGAAGAAGAACGGAAACGCAAGGAG GAGGAAAAAGCCAAAAAGGTACTTGTCATTTCTACACTGTGAAACGTTCGATTTTGTAGTGAAAATTTAGTGTATGTTTT TTATTTGTCAAATTAAGATTCTCTATATCTCAGTAAGATTTTGTGTGATTTTATCATCTGCATTAGGGTTTCAATTTCTG ATCATTAACTGAATTTGATTTTCTAGGCTGCTGAAATGCAAAGTGCTAAGGATAACAAATCTGCACCTGTTGATGAAGAT GATATGGACCCAACGGTATAGCTCCGCTTTTCGCTAATACATTTTTTTTTTCCATTTCAGCTATATTTGTTGAACTTTTT CATTTGTGAAAATTGTTTCTTTACTTTTGGGTGTTTTTTTCGCTGCAGCAATACTTTGAGAATAGGATAAAGTATCTTGC AGGTCAGAAAGGAGAAGGGAATAACCCGTATCCGCACAAGTTCTTTGTCACTATGTCTGTTGCTGAATACATTAAGGAGT ATGAAGGTTTAAGCAATGGGCAACACCTTGAGGACGTCTCTGTGTCTTTGGCTGGTAGGCAGCAGATTCTTTGTTGATGT TATTTCTTCCCCTTATGGTGGTTGGTTTGTGCTTATGTTGGTTTTAATAATGGTCTTTCTGCATTTCAGGCCGAATCATG CACAAGCGCGCATCTGGTGCAAAGCTTGTCTTTTATGATCTGCACGGTGGTGGTTTCAAGGTTCAGGTTATGGCCGATGC AAGGTACCCTGTGTTATCTTCTATTTTGCACATGTAGAGATGATGGTGATCCAAAACAATTTATATAGATTTTTTATCTT TTAAGCTAAGTGACTAATTTGCGTAATTTAGAAGCTAGTTTGTCGTTTGGTTCAAAAGCTAGTTTTACCAATTACCAAAC ACTTTAATCGAATCAGTTATAGTTCTTCAGCTTCCACTAGCTTCTAAGCTATCAGCTTCTAGCTTATTAGCTAGTTTTGT TAATCATAGCCTTTATAACGCATCTTATTGAAGTTTGGTGTCTGGTCATATAATAATCTTCTTTTATTGTCTAAAATATC TTATTGAAGTCTGGTGTCTGGTCATACAATAATCTTCTTTTATCATCGTTGTGATAATTTGCCCTATCCTTTTGGGTCTT CTATAATTTTTACACACGAATCATAAGCTAATTTGTTATATGGGTAAGTCTCTTAATCTATTACTATTGATTTTGCACAC TTCTCTGCATACTAATTTGCTTAGGTGCTAATGGGTCAGAGTTATAAAAATATATATTAAATGGCAAGAATTCAAGTATG GAAAAATGTAAATTTAAGAGATTACATTGGAATATCATGTTATGAAGTATTCCTTATTACGTGGCGTTTGACTAGCTTAG ATGTAGCTCTTTGGATCTTCAACTTGTGAAGTTGTTTTTAGTGTTTTAGTCTTTCTTAATGGTGTCCTTTTCCTTATTAT AGATCCAATGATTTCTTTTTTTTTTTCTTTTTATCCTGTTTAATTAAGTAGGACCTAAACAAATGATATCTGTGCAATGC AGTAAATCGGACTTGAATGAAGCTGAGTTTTCCAAGTTCCATTCTAATGTGAAGCGTGGTGACATTGTTGGCATCACTGG GTTTCCAGGTTTGGATGCTACAAACTTTCTGCGTTCTAATATTTTGTTTCACTTTGTCATTCTTGCATAATGCGTATATG TTTGTTTCTTATTCCATGACTGGCAGAGTAATAGTAACTACTTGCAATAAGGATAATAAGTTTTTTTTTTAAATTAAATG AATTAAGCCTTGTTAAGTAGGAAAAAGTTAATTATTAATTGCGTATTATTAGACAATTCTATCTTTAGACTAGGAACCCG TTTAAGCTCAAGAGTCAAAATCACTTTAAAACTGTTAGTTAGCTGTCAACATTTTGAAAGCCATATCTATTGTACTTGTA TTCATTAAGGGCTAAGTCCTACTTATTTCTGCTTTGTTGCTCCATAGGATGCATTCTACAGTAATATATTCCGAATATAA ATTTTTTCACCCTACATACAGCAGTTTTATCAGTTTTCACTTGTTTCATCGTCCAGGCAAAAGCAAGAAGGGAGAGCTTA GTATATTCCCTAAGACTTTTGTGGTACTGTCTCACTGTCTGCATATGATGCCGAGGCAAAAATCCGCAGCTGCTGCTGAT AATGCAAATTTGAAGGTCAGAACAATTCCTTCATGTTTTGATGATGTTTGATGACCACATACAATGACATTTTTACTTTA ATGATCTGCAGAAAAATCTGTGGGTACCAGGAAATACCAGGAATCCTGAAACCTACATTTTGAAAGATCAGGTATTATTC GCATAAAATCTCATTAATTTTAGTCATTTATAAACTTTTGTCCCACGTACTGTCTCACGTTCTTTGGACCATTTTTAGAA GGGTGATACTGAGGTGGATTCACTTGTATAATTGAGAAAATGTTCACTTGTTTAAGGGCACAGTTAATTACTATTGAAAC TAGCATCTTTATTTTTATGTTCCATCCTCTATTTTTTCATGTATTGAAAGATATAATGGAATTTTCACTAGTATTTTCTG CTTGCTATAATTAAACATACTTTGATAACTTCTATCTGTAGAAGCTGAACGGTTTTTTTCCCTTTTGCATTATCCCCTGT TTGCTTCACTTTTCTATCAAAATATAGTTTTTTGTTCTGAATTCTGACAAATTGGCTTATTCAATTAATTATCTTATTTT TTGTTTATAGGAAACAAGATACCGATTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTCAAGACTA GGTCCAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTTGTTCTCTGTCTGAGTATTCG GATGATGGATGCCTGTGATTTCTTTCCTTCCATTTACCTACTTTTTCCTCCACCCAGGTTGAAACACCTATGATGAACAT GATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAATATGAGGTTATTCATGAGAATTGCTC CAGAACTCTATCTTAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGC ATTGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCATATATGGACTACAACGACTTAATGGAACT AACTGAGCAATTGTTGAGTGGTGAGAATTTACTCCGTCTTTTGATTGTCATCTTGATTCTCTGTCGTATATCTTATCTTC AAGTCACCTGCTTTTTCTCATGATGTGGAAAAATAGGTATGGTTAAGGAGCTTACAAAAGGCAGCTATAAAATCAAGTAT CATGCAGATGGGATTGATAAGGATCCTATTGAAATCGATTTTACTCCACCTTTCAGGTCTGTGGTGTACATTTTCTTGTC ACTGATTGTCATGATAATTCTATTCTACTTTGAATGAGCAATTTGGGGTTTTTATTGTTACAGAAGGATTGACATGATTG AAGATTTAGAGAAGATGGCAGGCCTCAATATTCCCAAAGACTTGTCAAGTGAGGAAGCTAACCAATATCTGAGGGATGCT TGCTTGAAGCATGAGATCAAATGCCCTCCTCCCGAAACAACTGCTCGTTTGTTGGATAAAGTAATCTCCTTTCTCCCCCT TCTGAGTATAATCTTTTTTAATTTTTTACTTTCATTTAAAAGTTGGTACATGGTTGTACTTTCTTTTGCCTTGATGGAAT GGAGCAATTTTTTTATGGCACTATTTATCAATTGTATTTTCTATCTCATACTTATTGTGGAGTGTCAGCCTGTCGGGTAT GATTTGAAGATGATAAGGCTTTGGATGTTGGATAAAAAAAGTTGTTTGTGTTACACCTGGGAGAATGAAATAGATATGAA ATAGGTGGAGGGCATAGGACTACAAACATTCTAGTCTTATTTAAGAAAACACTTGACCGTTTTAGGAATATAACTGTTAT TTCCAGTAATTATATACGCTATACCAAAGACTTGTCTGGTGAAATGTAATTTATTTTCTGTAAGGATAAGGATAATGTGG CTGCAGTTTTAGTGAAAGCTTGGATACCACTCTGGTCTACTATTTTTTTCCCTTGTTTATACATTCTACGTGTCCTTTCT CCTTTCTTACTTATTTTTAATGAGTTCAGTTTTACATGCACGCAATTATAATTGCTGCACCTCATGCACGTATCTTTATT CCTTCTTCTTTTGAGCCTCCGTACGAGGTCTCTGCAGAATATGTGATTGTGACTTTTTCCTATTGCAGCTTGTGGGGCAC TTTTTGGAAGAAACGTGTGTGAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCATTGGCAAAGTGGCACAG ATCAAAACCAGGCCAGACTGAACGTTTTGAATTGTTTGTTAATAAACATGAAGTAAGACAATTACATTTAGGTGATTCTT ATTAAAAAAATATGGATTCATGCTTGAGTTTTAGTTACTGTTTCTGTTACTTTTCAGGTTTGCAATGCATATACGGAATT GAACGACCCTGTGGTGCAACGACAGAGATTTGCTGAACAACTAAAGGTGATGAGATGTGATAGACAGTAATATTTACTAA AATGATAATGCTTAAATGGTTGACCACATTTTCTTCAAATTAATAAGAGTACTAATTGTTATTTGTTTACATCTCAGGAC CGGCAATCAGGTGATGATGAGGCAATGGCCTTAGATGAAACATTTTGTACTGCTTTGGAGTATGGTTTGCCACCAACAGC TGGTTGGGGTTTGGGTATTGATAGGTTGACCATGATATTCACTGATTCACAGAATATTAAGGTTCTTGCTCTCTCTCTCT CTCTCTCACTATATATGTACTGTTTATGTTGGAAATTTCTTACAATCTTCTTCCTTTTGGTGACAGGAGGTTCTACTTTT CCCTGCCATGAAGCCTCAAGATTGA
CDS sequence (LotjaGi6g1v0240700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTTCCTTCCGAGCCACCGCCAGCAACCGCCACCGGCGAAACCATTAGCAAGAATGCACTGAAGCGGGAACTCAA GAACAAGCAGAAGGAAGAAGAACGGAAACGCAAGGAGGAGGAAAAAGCCAAAAAGGCTGCTGAAATGCAAAGTGCTAAGG ATAACAAATCTGCACCTGTTGATGAAGATGATATGGACCCAACGCAATACTTTGAGAATAGGATAAAGTATCTTGCAGGT CAGAAAGGAGAAGGGAATAACCCGTATCCGCACAAGTTCTTTGTCACTATGTCTGTTGCTGAATACATTAAGGAGTATGA AGGTTTAAGCAATGGGCAACACCTTGAGGACGTCTCTGTGTCTTTGGCTGGCCGAATCATGCACAAGCGCGCATCTGGTG CAAAGCTTGTCTTTTATGATCTGCACGGTGGTGGTTTCAAGGTTCAGGTTATGGCCGATGCAAGTAAATCGGACTTGAAT GAAGCTGAGTTTTCCAAGTTCCATTCTAATGTGAAGCGTGGTGACATTGTTGGCATCACTGGGTTTCCAGGCAAAAGCAA GAAGGGAGAGCTTAGTATATTCCCTAAGACTTTTGTGGTACTGTCTCACTGTCTGCATATGATGCCGAGGCAAAAATCCG CAGCTGCTGCTGATAATGCAAATTTGAAGAAAAATCTGTGGGTACCAGGAAATACCAGGAATCCTGAAACCTACATTTTG AAAGATCAGGAAACAAGATACCGATTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTCAAGACTAG GTCCAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGA TTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAATATGAGGTTATTCATGAGAATTGCTCCA GAACTCTATCTTAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGCAT TGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCATATATGGACTACAACGACTTAATGGAACTAA CTGAGCAATTGTTGAGTGGTATGGTTAAGGAGCTTACAAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGATTGAT AAGGATCCTATTGAAATCGATTTTACTCCACCTTTCAGAAGGATTGACATGATTGAAGATTTAGAGAAGATGGCAGGCCT CAATATTCCCAAAGACTTGTCAAGTGAGGAAGCTAACCAATATCTGAGGGATGCTTGCTTGAAGCATGAGATCAAATGCC CTCCTCCCGAAACAACTGCTCGTTTGTTGGATAAACTTGTGGGGCACTTTTTGGAAGAAACGTGTGTGAATCCTACATTC ATCATAAACCATCCTGAGATAATGAGTCCATTGGCAAAGTGGCACAGATCAAAACCAGGCCAGACTGAACGTTTTGAATT GTTTGTTAATAAACATGAAGTTTGCAATGCATATACGGAATTGAACGACCCTGTGGTGCAACGACAGAGATTTGCTGAAC AACTAAAGGACCGGCAATCAGGTGATGATGAGGCAATGGCCTTAGATGAAACATTTTGTACTGCTTTGGAGTATGGTTTG CCACCAACAGCTGGTTGGGGTTTGGGTATTGATAGGTTGACCATGATATTCACTGATTCACAGAATATTAAGGAGGTTCT ACTTTTCCCTGCCATGAAGCCTCAAGATTGA
Protein sequence (LotjaGi6g1v0240700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVPSEPPPATATGETISKNALKRELKNKQKEEERKRKEEEKAKKAAEMQSAKDNKSAPVDEDDMDPTQYFENRIKYLAG QKGEGNNPYPHKFFVTMSVAEYIKEYEGLSNGQHLEDVSVSLAGRIMHKRASGAKLVFYDLHGGGFKVQVMADASKSDLN EAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSAAAADNANLKKNLWVPGNTRNPETYIL KDQETRYRLRHLDLMLNPEVREIFKTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAP ELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDLMELTEQLLSGMVKELTKGSYKIKYHADGID KDPIEIDFTPPFRRIDMIEDLEKMAGLNIPKDLSSEEANQYLRDACLKHEIKCPPPETTARLLDKLVGHFLEETCVNPTF IINHPEIMSPLAKWHRSKPGQTERFELFVNKHEVCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGL PPTAGWGLGIDRLTMIFTDSQNIKEVLLFPAMKPQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 66 | 66 | - | – | |
| PIRSF | 8 | 596 | 589 | 2.7E-267 | ||
| PANTHER | 12 | 596 | 585 | 0.0 | – | |
| PANTHER | 12 | 596 | 585 | 0.0 | – | |
| Coils | 19 | 55 | 37 | - | – | |
| MobiDBLite | 20 | 66 | 47 | - | – | |
| SUPERFAMILY | 65 | 209 | 145 | 5.88E-36 | ||
| TIGRFAM | 67 | 595 | 529 | 6.5E-177 | ||
| Gene3D | 68 | 210 | 143 | 2.9E-48 | – | |
| Hamap | 73 | 595 | 523 | 37.499 | ||
| CDD | 119 | 254 | 136 | 1.11756E-45 | – | |
| Pfam | 120 | 197 | 78 | 9.9E-13 | ||
| Gene3D | 238 | 596 | 359 | 3.0E-143 | – | |
| SUPERFAMILY | 242 | 593 | 352 | 7.08E-119 | – | |
| Pfam | 242 | 592 | 351 | 7.9E-83 | ||
| CDD | 257 | 594 | 338 | 0.0 | ||
| ProSiteProfiles | 264 | 594 | 331 | 26.472 | ||
| PRINTS | 279 | 289 | 11 | 2.5E-37 | ||
| PRINTS | 295 | 311 | 17 | 2.5E-37 | ||
| PRINTS | 324 | 337 | 14 | 2.5E-37 | ||
| PRINTS | 342 | 359 | 18 | 2.5E-37 | ||
| PRINTS | 477 | 493 | 17 | 2.5E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Lysine-tRNA ligase activity | Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Lysyl-tRNA aminoacylation | The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. The lysyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a lysine-accetping tRNA. |
Expression pattern of LotjaGi6g1v0240700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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