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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0255500 |
Transcript ID | LotjaGi6g1v0255500.2 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Importin subunit alpha; TAIR: AT3G06720.1 importin alpha isoform 1; Swiss-Prot: sp|Q96321|IMPA1_ARATH Importin subunit alpha-1; TrEMBL-Plants: tr|I1MGI7|I1MGI7_SOYBN Importin subunit alpha; Found in the gene: LotjaGi6g1v0255500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56824749..56828363) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGCTCAGGCCCAATGCTAGGACCGAGATTCGCCGCAACCGCTACAAGGTTGCCGTCGACGCCGACGAAGGTCGCCG GAGGAGGGAGGACAACATGGTTGAGATCCGGAAGAGTAAGCGCGAAGAGAGCCTCCAGAAGAAGCGCCGTGAGGGTCTCC AAGCTCAGCAGCAGTTCGCCACTCCTCTTCAGTCTTCCTCCATTGTCGAGAAAAAGGTAATTAGGGCTCCATCGTGGACT CTGCTTTTTCGATTTTGTTGTTTGATCGATTGAGATTCTGTGATTTGAATCGATTGGATAGTTGGTTGTGAAAACGGTTG TGACGGTTGTGTGTGATTGTTTGTTGTTGCAGTTAGAGAGTCTTCCGGCGATGGTTGCTGGGGTTTGGTCGGATGATAAT AGCCAGCAGCTGGAAGCAACTACTCAATTTCGGAAGCTGCTATCCATTGGTAAAAATGGATTCTGTTTCTATGATCCTGT GTGTTGAAGTTGTTATGATTCTCATGAATCACTCTGTTTCTATGATTCTGTGTGTTGAAGTTGTTATGTTTGTTATGTAG AGCGTAGCCCTCCGATTGAGGAAGTTATCCAATCTGGTGTTGTGCCGCGTTTTGTTGAGTTTCTCGTTAGGGAGGATTTC CCTCAACTTCAGGTTTGTACTTTTTCGCTTCCGCATTTATACTTGTTAAGGTGTAGTGTAGACTGTGGGGTAGTTGGAAT TTTTTGTGTTGTTGATTAGTTATTTGTGTGACGTGTTGTTTGGTTAGTTTGAGGCTGCGTGGGCTCTCACCAACATTGCG TCCGGGACTTCGGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTACCGATATTTGTCAAGCTGCTTAGTTCGCCTAG TGATGATGTTCGCGAGCAGGTATATTGATACTGAAATGCAGTAGCGCGGGCATTTTTGAATTTTTGAGTTTTTGTTGAGC TCTCTTTAACTATGAAGCTTTGAAATTTAGGCGGTGTGGGCGTTGGGAAATGTTGCTGGTGATTCTCCTAGGTGTCGAGA TCTAGTGCTCAGCCATGGTGCCCTGATCCCATTGTTGTCCCAGCTGAATGAGCATGCCAAACTTTCAATGCTGAGAAACG CCACGTGGACCTTGTCAAACTTCTGCAGGGGCAAGCCTCAGCCTCCATTTGAACAGGTAGTTGTCGTTTTCGTTAATTTA AACCCAACGGGCCTCAGCCTCCACGTGGACCTTGTCGTTTTCGGTTAAAGGGCTTCTGTCTGTATATTTATATTAATACT AGAATATTTGATGGGCAGGTGAGGCCAGCGCTTCCAGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAGGTCCTGAC TGACGCATGCTGGGCGCTATCTTATCTTTCCGATGGAACAAACGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTA GCAGATTGGTTCAGCTTCTTCTGTGAGTATTAATTCTACTCTACTCGCTCGACAAAGATTCTGTTATTTCAATTTTGGAT TGCTTTGGCCCTAAACGTGTATCCATGTTTTGAAGGCACCCGTCTCCTTCCGTGCTGATTCCTGCACTTCGCACAGTGGG AAATATTGTTACTGGAGACGATATGCAGACTCAGGTATTATTTGTGAACAGTTCTATTAATTGCTTGCTATCTTTTTATT CTCTTATTAAATATAAGGTTTTCTGTGTAAAACACTAAAAATTAGTGTTATATAAGTATTTTTCGGAAAATTTTTTATTA AAAAATTTATATAACTTCACCCGAACTGTTGGTACTTGGTAGTTGGTAGGTTAGTTTTGCTTGTCTAATTTGATTAATTA GCTCAAGCACTGATGCTATAATTTGGGGCTAATGGAGCTTCATACCAAATTCCAGAGTAACTACATAGGTCAGAAAAAAG TGAACAGTTAGTTATATTGATATTGTTAGTCATTATCCACAATGAAATTCACCTACCTCTTTCATGGCTTTTACCACCTA CATATGCCATTTATACCACAACTAATTATTACCAAGAATCAATAATTATTTTCCTTTGATGTTTTTGTGCTTGTGTCATT ACTCATTAGTGGGAATTTCCTTATTTTCTGGAACTATTTTCATTAGGCTATTATCAATCATGGTTCACTCCCGTGCCTTT TGAGCCTGTTGACGCAAAATCATAAAAAAAGTATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAAC AAAGAGCAGATACAGGTGCTTCACTGCTTTATAAAGAATTCATTTTTTATTGTTTATGCTTTTCTTTTATTTTGATGTGG TAGTATATATGCTTGCATATTTTATTGAATTTCTCAATGGAGTTATTGACCTTTTGAAGTTTATGAGTGTTCCAAGTTTC TTATTGACCTGATGACCTCTTATTGTGTTTTACTGTTGCTTTGGTCTTGTCATATGGATCGTTATGCTTTTTTAACTTGG AGATGTGGTGCAGTGTAATAATAACCGGCTTAAACATATTTAGTTCTCAGGTTAAACCGATTGGAGAAGATAAATTAGAG AATGATGATTGACACGTTCTCAACTCCATTCTATGTACAAAAACATAATGTATAGTGAATATACTGTGGTGTGCCAGTGA TCTTTGGCATTGTGCTATCTCATAAGGATAATAATTGAGTATGAGTCGAATGTAAGCCCTTGAAGTTTGACGCATCAACT GATTGACCGAATCTTATATTTTTGTTTCACATGACGAACATTTTTAAAATTTGTTCCAAGTACATCATTGAAGGAAATCT TCTGTCTTGCTGGAAGCCATTGATGGTTATATTTTGTTTGGGATCGTGGCTATGTTTTATCAGAATTTTATTGCAAAACA TAAGATTTTCTATGGGCTTATTTGTTGAAAAAGCTCTCTGAACTTTACATTTTATGTATGCAGTCTGTTATTGAAGCGGG TCTGATTGCTCCCCTTGTTAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAGGAAGCTGCTTGGGCAATTTCGAATG CTACATCTGGCGGTACCCATGAGCAGATCAAGTATGTGAATTTTTACTTTCAATTTTTTTTCACCCAGCTTCATAATGGT GATGTTGGGACTTGGGGGTTTATGTTATTAACTTGCTGTATGTCATTTAAGGTACTTGGTGAGCCAGGGTTGCATCAAGC CTCTCTGTGATCTGCTTGTTTGTCCCGACCCAAGAATCGTTACTGTCTGTTTAGAAGGTCTTGAGAACATTCTGAAGGTT GGGGAGGCTGACAAGAACTTGGGTAACTCTGGAGATGTCAACTTGTATGCTCAGTTGATAGATGAAGCTGAGGGATTGGA AAAGATTGAAAACCTGCAGAGCCATGACAACAATGAAATATATGAGAAGGCTGTTAAAATCCTCGAGACATATTGGTTGG AAGATGAAGATGAGACTTTGCCTCCAGGTGAAGGTGCTCAACCTGGGTTTAATTTTGGAACCAACGAGCTTCCAGTCCCA TCCGGTGGATTCAACTTCAGTTGAAGACTTCTGTTAAGCAGGTAAATTTGCCTTACTTTGTCTTAATTATTTCTCCTTTG GGGTTGTAATCATAG
CDS sequence (LotjaGi6g1v0255500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGCTCAGGCCCAATGCTAGGACCGAGATTCGCCGCAACCGCTACAAGGTTGCCGTCGACGCCGACGAAGGTCGCCG GAGGAGGGAGGACAACATGGTTGAGATCCGGAAGAGTAAGCGCGAAGAGAGCCTCCAGAAGAAGCGCCGTGAGGGTCTCC AAGCTCAGCAGCAGTTCGCCACTCCTCTTCAGTCTTCCTCCATTGTCGAGAAAAAGTTAGAGAGTCTTCCGGCGATGGTT GCTGGGGTTTGGTCGGATGATAATAGCCAGCAGCTGGAAGCAACTACTCAATTTCGGAAGCTGCTATCCATTGAGCGTAG CCCTCCGATTGAGGAAGTTATCCAATCTGGTGTTGTGCCGCGTTTTGTTGAGTTTCTCGTTAGGGAGGATTTCCCTCAAC TTCAGTTTGAGGCTGCGTGGGCTCTCACCAACATTGCGTCCGGGACTTCGGAGAACACTAAGGTGGTAATTGATCATGGG GCAGTACCGATATTTGTCAAGCTGCTTAGTTCGCCTAGTGATGATGTTCGCGAGCAGGCGGTGTGGGCGTTGGGAAATGT TGCTGGTGATTCTCCTAGGTGTCGAGATCTAGTGCTCAGCCATGGTGCCCTGATCCCATTGTTGTCCCAGCTGAATGAGC ATGCCAAACTTTCAATGCTGAGAAACGCCACGTGGACCTTGTCAAACTTCTGCAGGGGCAAGCCTCAGCCTCCATTTGAA CAGGTGAGGCCAGCGCTTCCAGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAGGTCCTGACTGACGCATGCTGGGC GCTATCTTATCTTTCCGATGGAACAAACGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTAGCAGATTGGTTCAGC TTCTTCTGCACCCGTCTCCTTCCGTGCTGATTCCTGCACTTCGCACAGTGGGAAATATTGTTACTGGAGACGATATGCAG ACTCAGGCTATTATCAATCATGGTTCACTCCCGTGCCTTTTGAGCCTGTTGACGCAAAATCATAAAAAAAGTATCAAGAA AGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAACAAAGAGCAGATACAGTCTGTTATTGAAGCGGGTCTGATTG CTCCCCTTGTTAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAGGAAGCTGCTTGGGCAATTTCGAATGCTACATCT GGCGGTACCCATGAGCAGATCAAGTACTTGGTGAGCCAGGGTTGCATCAAGCCTCTCTGTGATCTGCTTGTTTGTCCCGA CCCAAGAATCGTTACTGTCTGTTTAGAAGGTCTTGAGAACATTCTGAAGGTTGGGGAGGCTGACAAGAACTTGGGTAACT CTGGAGATGTCAACTTGTATGCTCAGTTGATAGATGAAGCTGAGGGATTGGAAAAGATTGAAAACCTGCAGAGCCATGAC AACAATGAAATATATGAGAAGGCTGTTAAAATCCTCGAGACATATTGGTTGGAAGATGAAGATGAGACTTTGCCTCCAGG TGAAGGTGCTCAACCTGGGTTTAATTTTGGAACCAACGAGCTTCCAGTCCCATCCGGTGGATTCAACTTCAGTTGA
Protein sequence (LotjaGi6g1v0255500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFATPLQSSSIVEKKLESLPAMV AGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHG AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE QVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQ TQAIINHGSLPCLLSLLTQNHKKSIKKEACWTISNITAGNKEQIQSVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATS GGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKNLGNSGDVNLYAQLIDEAEGLEKIENLQSHD NNEIYEKAVKILETYWLEDEDETLPPGEGAQPGFNFGTNELPVPSGGFNFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 530 | 530 | 1.1E-302 | – | |
PANTHER | 1 | 530 | 530 | 1.1E-302 | – | |
ProSiteProfiles | 1 | 58 | 58 | 15.779 | ||
PIRSF | 2 | 530 | 529 | 4.7E-223 | ||
Gene3D | 9 | 50 | 42 | 3.3E-6 | ||
Pfam | 12 | 96 | 85 | 7.2E-25 | ||
SUPERFAMILY | 12 | 502 | 491 | 3.19E-134 | ||
Gene3D | 74 | 497 | 424 | 4.3E-221 | ||
SMART | 106 | 147 | 42 | 5.0E-9 | ||
Pfam | 107 | 147 | 41 | 3.7E-10 | ||
ProSiteProfiles | 117 | 160 | 44 | 10.482 | ||
SMART | 149 | 189 | 41 | 2.7E-11 | ||
Pfam | 149 | 188 | 40 | 1.9E-13 | ||
ProSiteProfiles | 160 | 202 | 43 | 12.127 | ||
SMART | 190 | 232 | 43 | 0.043 | ||
Pfam | 191 | 232 | 42 | 8.7E-9 | ||
SMART | 234 | 273 | 40 | 0.038 | ||
ProSiteProfiles | 244 | 286 | 43 | 8.592 | ||
Pfam | 245 | 273 | 29 | 1.5E-6 | ||
SMART | 275 | 315 | 41 | 3.9E-6 | ||
Pfam | 276 | 314 | 39 | 1.0E-8 | ||
SMART | 317 | 358 | 42 | 9.4E-9 | ||
Pfam | 318 | 358 | 41 | 2.8E-10 | ||
ProSiteProfiles | 328 | 371 | 44 | 9.922 | ||
Pfam | 360 | 399 | 40 | 1.8E-11 | ||
SMART | 360 | 400 | 41 | 4.9E-9 | ||
ProSiteProfiles | 371 | 399 | 29 | 9.152 | ||
SMART | 403 | 443 | 41 | 2.8E-6 | ||
Pfam | 404 | 441 | 38 | 2.9E-7 | ||
Pfam | 458 | 502 | 45 | 5.0E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. | ||
Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
Molecular function | Nuclear import signal receptor activity | Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein. |
Expression pattern of LotjaGi6g1v0255500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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