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LotjaGi6g1v0276700.7

Overview

Field Value
Gene ID LotjaGi6g1v0276700
Transcript ID LotjaGi6g1v0276700.7
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Protein FAR1-RELATED SEQUENCE 6; TAIR: AT1G52520.1 FAR1-related sequence 6; Swiss-Prot: sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr|A0A151T6B6|A0A151T6B6_CAJCA Protein FAR1-RELATED SEQUENCE 6; Found in the gene: LotjaGi6g1v0276700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59373428..59375431) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAAGAGACCTCTCTCTGCTGTGAAGATTTGCCACATGGGGAATGTATTGAGGTTCATAAAGATGAAGATGCTGCACT AATTGAATTAGATTCTCAAAATGGGTTTTCTGAAGGAAGAAAGGAATTTGATGCACCTGCTGTTGGAATGGAGTTTGAGT CATATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGTTTTTGTGTAAGGGTTAAGAATTCATGGTTC AAACGAAATAGCAGAGAAAAATACGGTGCTGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAACAAAAGATGTTAACCA TTTGAGAAAAGAGACAAGAACTGGATGTCCTGCAATGATGAGGATTAGGATAGCGGAGTCTCAGAGATGGCGGATAATTG AGGTCATACTTGAACATAACCACATTTTAGGTGCTAAGATACACAAATCAGCTAAGAAGATGGGAAATGGAACTAAAAGG AAGTCATTGCCTAGTTCTGATTCTGAGGTGCAAACAGTTAAGTTATACCGTCCACTTGTGATAGATGCAGGAGGTAATGG TAATTTAAACCCAAGTGCAAGAGATGACCGAACTTTCTCTGAAATGTCTAATAAGTTGAACGTTAAAAGGGGTGACACAC AGGCCATTTATAATTTCCTTTGCCGCATGCAATTGACTAATCCAAATTTCTTTTATTTGATGGATTTCGATGATGAAGGG CATTTGAGGAATGCATTCTGGGCTGATGCTAGATCCAGGGCTGCATGTGGTTATTTTGGAGATGTTATATATTTTGACAA TACTTATTTGTCAAGCAAATATGAAATCCCTCTTGTGGTTTTTGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAG GCTGTGGTCTACTTGCAGGTGAAACAACAGAGTCTTATATATGGTTGTTTAGAACATGGGTTACATGTATGTCTGGATGT TCTCCCCAAACTATTATTACAGACAGGTGCGAGGCTTTGCAGAGTGCAATCATAGAGGTCTTTCCTAAATCTCATCATTG TTTTGGCTTGTCATTAATTATGAAAAAAGTACCAGAAAAATTGGGAGGGTTGCACAATTATGATGGTATCAGGAAAGCAC TTATTAAAGCAGTTTATGAGACATTGAAAATCAGTGAATTTGAAGCAGCATGGGGAATTATGATTCAACGTTTTGGAGTT AGTGATCATGAGTGGCTTCGTTCTCTATATGAAGATCGAGTTCGTTGGGCACCCGTATTTTTGAAGGATGTATTTTTTGG TGGAATGTCTGCAGCACGCCCTGGTGAGAGCATTGGTCCATTTTTTGGTAGATATGTGCACAAACAGACTCCTTTGAAGG AGTTTCTTGATAAGTATGAATTAGCTCTGCACAAGAAGCACAAGGAAGAATCTTTGGCAGATACTGAATCAAGAAACTCA AGCCCTGTGCTGAAAACTAGATGTTCTTTAGAGTTGCAGCTCTCCAGAATGTACACAAGAGAAATATTCATGAAGTTCCA ATTTGAAGTGGAAGAAATGTTTTCTTGTTTTGGCACAACACAATTACATGTGGATGGTCCCATCGTAATTTACTTGGTCA AGGAGCGCGTTTTGATCGATGGAAACAGACGGGAGATTAAGGATTTCGAAGTTGTGTACAGTAGGGCAGCAGGTGAACTT CGTTGCATCTGCAGTTGCTTTAACTTCTATGGATATTTATGTCGGCACGCGCTGTGTGTGCTCAATTTTAATGGGGTGGA AGAGATACCTTTCAAGTACATTCTTTCACGGTGGAAGAAAGATTACAAGCGCCTTCATGTTCCTGATCATAGTTCTGTTA GCGCTGATGATACTGACCCTATTCAATGGTCTAATCAGTTATTTAGTAGTGCCCTACAAGTTGTCGAGGAAGGCACAATT TCTCTGGATCATTACAATGTAGCGCTGCAGGCCTGTGAAGAATCACTGAGTAAGGTTCATGATGTAGACCAGAGACAGGA CTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0276700.7) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGAGACCTCTCTCTGCTGTGAAGATTTGCCACATGGGGAATGTATTGAGGTTCATAAAGATGAAGATGCTGCACT AATTGAATTAGATTCTCAAAATGGGTTTTCTGAAGGAAGAAAGGAATTTGATGCACCTGCTGTTGGAATGGAGTTTGAGT CATATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGTTTTTGTGTAAGGGTTAAGAATTCATGGTTC AAACGAAATAGCAGAGAAAAATACGGTGCTGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAACAAAAGATGTTAACCA TTTGAGAAAAGAGACAAGAACTGGATGTCCTGCAATGATGAGGATTAGGATAGCGGAGTCTCAGAGATGGCGGATAATTG AGGTCATACTTGAACATAACCACATTTTAGGTGCTAAGATACACAAATCAGCTAAGAAGATGGGAAATGGAACTAAAAGG AAGTCATTGCCTAGTTCTGATTCTGAGGTGCAAACAGTTAAGTTATACCGTCCACTTGTGATAGATGCAGGAGGTAATGG TAATTTAAACCCAAGTGCAAGAGATGACCGAACTTTCTCTGAAATGTCTAATAAGTTGAACGTTAAAAGGGGTGACACAC AGGCCATTTATAATTTCCTTTGCCGCATGCAATTGACTAATCCAAATTTCTTTTATTTGATGGATTTCGATGATGAAGGG CATTTGAGGAATGCATTCTGGGCTGATGCTAGATCCAGGGCTGCATGTGGTTATTTTGGAGATGTTATATATTTTGACAA TACTTATTTGTCAAGCAAATATGAAATCCCTCTTGTGGTTTTTGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAG GCTGTGGTCTACTTGCAGGTGAAACAACAGAGTCTTATATATGGTTGTTTAGAACATGGGTTACATGTATGTCTGGATGT TCTCCCCAAACTATTATTACAGACAGGTGCGAGGCTTTGCAGAGTGCAATCATAGAGGTCTTTCCTAAATCTCATCATTG TTTTGGCTTGTCATTAATTATGAAAAAAGTACCAGAAAAATTGGGAGGGTTGCACAATTATGATGGTATCAGGAAAGCAC TTATTAAAGCAGTTTATGAGACATTGAAAATCAGTGAATTTGAAGCAGCATGGGGAATTATGATTCAACGTTTTGGAGTT AGTGATCATGAGTGGCTTCGTTCTCTATATGAAGATCGAGTTCGTTGGGCACCCGTATTTTTGAAGGATGTATTTTTTGG TGGAATGTCTGCAGCACGCCCTGGTGAGAGCATTGGTCCATTTTTTGGTAGATATGTGCACAAACAGACTCCTTTGAAGG AGTTTCTTGATAAGTATGAATTAGCTCTGCACAAGAAGCACAAGGAAGAATCTTTGGCAGATACTGAATCAAGAAACTCA AGCCCTGTGCTGAAAACTAGATGTTCTTTAGAGTTGCAGCTCTCCAGAATGTACACAAGAGAAATATTCATGAAGTTCCA ATTTGAAGTGGAAGAAATGTTTTCTTGTTTTGGCACAACACAATTACATGTGGATGGTCCCATCGTAATTTACTTGGTCA AGGAGCGCGTTTTGATCGATGGAAACAGACGGGAGATTAAGGATTTCGAAGTTGTGTACAGTAGGGCAGCAGGTGAACTT CGTTGCATCTGCAGTTGCTTTAACTTCTATGGATATTTATGTCGGCACGCGCTGTGTGTGCTCAATTTTAATGGGGTGGA AGAGATACCTTTCAAGTACATTCTTTCACGGTGGAAGAAAGATTACAAGCGCCTTCATGTTCCTGATCATAGTTCTGTTA GCGCTGATGATACTGACCCTATTCAATGGTCTAATCAGTTATTTAGTAGTGCCCTACAAGTTGTCGAGGAAGGCACAATT TCTCTGGATCATTACAATGTAGCGCTGCAGGCCTGTGAAGAATCACTGAGTAAGGTTCATGATGTAGACCAGAGACAGGA CTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0276700.7) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEETSLCCEDLPHGECIEVHKDEDAALIELDSQNGFSEGRKEFDAPAVGMEFESYDDAYNYYICYAKEVGFCVRVKNSWF KRNSREKYGAVLCCSSQGFKRTKDVNHLRKETRTGCPAMMRIRIAESQRWRIIEVILEHNHILGAKIHKSAKKMGNGTKR KSLPSSDSEVQTVKLYRPLVIDAGGNGNLNPSARDDRTFSEMSNKLNVKRGDTQAIYNFLCRMQLTNPNFFYLMDFDDEG HLRNAFWADARSRAACGYFGDVIYFDNTYLSSKYEIPLVVFVGINHHGQSVLLGCGLLAGETTESYIWLFRTWVTCMSGC SPQTIITDRCEALQSAIIEVFPKSHHCFGLSLIMKKVPEKLGGLHNYDGIRKALIKAVYETLKISEFEAAWGIMIQRFGV SDHEWLRSLYEDRVRWAPVFLKDVFFGGMSAARPGESIGPFFGRYVHKQTPLKEFLDKYELALHKKHKEESLADTESRNS SPVLKTRCSLELQLSRMYTREIFMKFQFEVEEMFSCFGTTQLHVDGPIVIYLVKERVLIDGNRREIKDFEVVYSRAAGEL RCICSCFNFYGYLCRHALCVLNFNGVEEIPFKYILSRWKKDYKRLHVPDHSSVSADDTDPIQWSNQLFSSALQVVEEGTI SLDHYNVALQACEESLSKVHDVDQRQD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31669:SF10
36 666 631 1.5E-265 –
PANTHER
PTHR31669
36 666 631 1.5E-265
IPR031052
Pfam
PF03101
60 143 84 7.8E-22
IPR004330
Pfam
PF10551
262 355 94 2.3E-28
IPR018289
Pfam
PF04434
537 581 45 2.0E-4
IPR007527
ProSiteProfiles
PS50966
549 585 37 9.606
IPR007527
SMART
SM00575
560 587 28 3.0E-6
IPR006564

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0276700.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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