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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304300 |
| Transcript ID | LotjaGi6g1v0304300.2 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62172093..62176128) extracted from Lotus japonicus Gifu genome v1.2.
GAGTTGTGATTTCTGAAAGAAATGTTTATCTTAGTCTGCTTCGGATAAACAACTTAATTAAGTGCTTATGACGCTTATCG CATAAGCAGGGATAAGCGCTTATTATAAGCTAATTTAAGAAACTTAATGAAATAAGCTAAAACTAGGTTATGATAAACAT AAACTCAAATTCATTAGCTAATATGAATAACTTACGAAAATAAGCTTAAAAAAGTGACTTATGCTATAAGATAAGCTCAA ATAAGTTCTTCTAAACGTTGCCTTATTTTGAGTTGATGCAGGTTAGGAAAAGGACGTATGGGGTTTATGCATCACTATCA GAGATGGGGGAGTATCATTCACAGAGACCACCAACTCCTCTGCTTGACACCATAAACTATCCAATTCATATGAAGAATCT CACTACAAAGGTATAGTAAATGAATACATATATAAGTTATGCTGGTTATTGGTTATAGTGAAAATTTGAATCTTAGAACT TGAAAAACATTGTTGCAGGAGCTGAAACAACTTGCGGATGAGCTGCGTTCTGATGTAATTTTCAAGGTTTCTAGAACTGG AGGTCACCTGGGGTCAAGCCTTGGTGTAGTGGAACTCACTGTTGCCCTCCACTATGTTTTCAATGCTCCTAAAGATAAAA TATTGTGGGATGTGGGTCATCAGGTTGGTTATTAACTATTATCAGGGTTTTAAATTCCGGTAAAGGGATTTCGAGTCCCC GCATTGGTATCGCGACCGCAATTGCGGTTGCACCAACCTGCATTTGCTTGCAATTCCGCAACGCAACTGCGACCACAATT TAAAACCCTAATGAATATTATTATTATTATTATTATTATTATTATTATTATCATATTCTTTTGGTATTTCTTGGGAATGG CACTTGGTCTCAATTGTAATGAATTTTGCAGTCTTATCCACATAAAATGCTCACTGGTAGGAGGGGTAAGATGAATACCC TGAGGCAGACAGATGGACTATCTGGATTTACAAAACGCTCAGAGAGTGAATATGATTGCTTTGGCACTGGTCACAGCTCA ACAACAATATCAGCAGGGCTAGGTAATTCTTTTGTTGCTAGCTGAGTTTCAACATAGAATTTTTTAAGTCCATGGTTTAG ATAAGTATATAATTAAGTTATTAGGACTAAGAATGGTTTACTGTTTTACATCTCCAAGAGAATACTTAGCTGCAATTACA CCACTGCTTGACATTGATGCACAATAGAACTTTGTGACTTAGCTCAAACCTATTTACTAATGCACAAACAGGAATGGCTG TTGGAAGGGATCTGAAGGGAGAAAAGGACAACGTGATTGCTGTAATTGGTGATGGTGCCATGACAGCTGGTCAAGCTTAT GAAGCCATGAACAATGCTGGATATCTTGATTCTGATATGATTGTTATTCTAAATGATAATAGACAGGTCTCTCTACCAAC TGCTACTCTTGATGGTCCCACCCCACCTGTAGGTGCTTTGAGTAGCGCTCTCAGCAGGTTACAATCAAATAGACCTCTCA GAGAACTGAGAGAGGTTGCAAAGGTGAGCACTGAGAAGCACAACTCACAAGTCTCAATCTGTTGAATGATTTTTGCAGAT AGATACGAAGTTTTAGTGAAAATGATTCTTGACAACATGAGGATTTTGCAGGGAGTAACTAAACAAATTGGTGGCCCTAT GCATGAATTGGCTGCAAAAGTTGATGAATATGCTCGCGGCATGATCAGCGGTTCTGGATCAACACTGTTTGAAGAGCTTG GGCTGTACTATATTGGTCCTGTTGATGGTCATAACATAGATGATCTTGTTGCCATTCTCAATGAAGTTAAAAGTACCAAA ACAGCTGGTCCTGTACTTATCCATGTTGTCACTGAAAAAGGCCGCGGATACCCATATGCAGAAAAAGCAGCAGACAAGTA CCATGGTAAAAGAGCCACTACAAATTTCTTGACTAGCACCAACATAATTCACCACGTAAATTTATCTTGCTAGGCTCACT CAGCTTTAGAATTTGTTGGAGTATTAATTGCATAGCTCTTATACCATCTTAAAATTCGTTATACAACTCTGGTAGGCCTA ACTCTACCATCTTTAGAATGTATTAGGGTTAGGCCTAGCCCAAATTTTAATAGAATGCACCAAGTACCTCTGAGGCCTGA GCCATCCATTAAAGATATAAAAAAAAATTTAACCTGCCTCTTGACAATTACTGTCAATCACCATGCTTTAATAGTGGATC ATAGCCATTTAGTTATTTCTAGAGAAACACACTACCTATAGGAAGCATTTTTAATCTGACTTGCTATATTCATCACAGGC ATGTAACTTTGTTTGATTTTTCAGGAGTTACCAAGTTTGATCCAGCAACTGGGAAACAATTCAAAGCCAAGCCAACCACC CAGTCATACACAACATACTTTGCAGAAGCTTTGATTGCAGAAGCAGAAGCTGACAAAAACATTGTAGGAATCCATGCTGC AATGGGTGGTGGAACTGGCATGAATCTATTCCAGAAGTATTTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGC ATGCCGTTACATTTGCTGCGGGTCTGGCTTGTGAAGGTCTTAAGCCTTTTTGTGTAATTTACTCATCATTCATGCAGAGA GCTTATGACCAGGTAAGATAACAACACACTCTAGTCTCTACATCTTCATCATAGTATTGCTTTATAGTGTGTTTGGATAA ATAGATAGTATTTATTGCATAAGTGCTTACTCATAAGCAAATTTGAGAAACTTCAATAAGTTCAAAATAGATTATAAGTA GGTCTAAGCGCTTATTCATAAGCTAATCTCAGCAGCGTATGAAAATAAAACAGCTTATAGGCAGGTCATAAGTTATTTAG TATTTACATAAGCTCTCCCGAACGCTTGCATGAGCACTTATACTATAAGATAAACTCAAATAAGCAATTCCAAACAGGGC CTAAGTTAATAATGATTTCAAAAAGACATGCACAACATTGATTTTTGCAAATAATGCTCAAAGTATGTGTTCCATGTCCT TTCCAAGGTGGTGCATGATGTGGATCTTCAGAAGCTGCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGAGCAG ATGGTCCAACCCACTGTGGTGCTTTTGATGTCACTTTTATGGCATGTCTCCCAAACATGGTTGTGATGGCTCCTTCTGAT GAAGCAGAGCTTTTCCACATGGTTGCTACTGCAGCTACCATTGATGATCGACCTAGTTGCCTCAGATATCCAAGGGGAAA TGGGGTTGGTGTTGAATTACCACAATGGAACAAAGGCACTCCTCTTGAGGTAACTTCGAATTTTACCTGCATTCAAAACG TACCTTATGAAGTTGATTAGGAACAATTCTTGCAAATCAACTTCGTGCGTGTTTGGAAATCTGCATTTGATTCTGAGGAA AAGGAAACTAATCCAACCATGGTATTAACATTTGTGTTCTGACATCTTAACAGATTGGAAAAGGTAGGATTTTGATTGGA GGGGAAAGAGTGGCCCTCTTGGGCTATGGATCAGCTGTTCAGAGCTGTGTGGCTGCAGCTTCCTTACTGGAACACCATGG CATGCATGTAACAGTGGCTGATGCACGTTTCTGCAAACCATTGGATCATTCCCTTATTCGTAGCCTAGCAAAATCACATG AGATTTTGATCACTGTAGAAGAAGGATCAATAGGGGGATTTGGGTCTCATGTTGTTCAGTTCATGGCCCTTGATGGTCTT CTTGATGGAAAATTGAAGGTATGAAATTTGATGTAAAATAGTTACATTAATTTCTTTTATACTAGCATACATGCACCTTT GAAGTTTCCATCAAAAACTCATGTGCCTTTCATTTAACTATTGCAGTGGAGGCCAATGGTTCTTCCTGATTGTTACATTG ATCATGGATCACCTGCTGATCAATTGTCTCAAGCTGGTCTTACACCATCTCACATAGCAGCAACAGTTTTGAACATGCTT GGACAAACAAGAGAGGCACTAGAGGTCATGTCATGA
CDS sequence (LotjaGi6g1v0304300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAGTATCATTCACAGAGACCACCAACTCCTCTGCTTGACACCATAAACTATCCAATTCATATGAAGAATCTCAC TACAAAGGAGCTGAAACAACTTGCGGATGAGCTGCGTTCTGATGTAATTTTCAAGGTTTCTAGAACTGGAGGTCACCTGG GGTCAAGCCTTGGTGTAGTGGAACTCACTGTTGCCCTCCACTATGTTTTCAATGCTCCTAAAGATAAAATATTGTGGGAT GTGGGTCATCAGTCTTATCCACATAAAATGCTCACTGGTAGGAGGGGTAAGATGAATACCCTGAGGCAGACAGATGGACT ATCTGGATTTACAAAACGCTCAGAGAGTGAATATGATTGCTTTGGCACTGGTCACAGCTCAACAACAATATCAGCAGGGC TAGGAATGGCTGTTGGAAGGGATCTGAAGGGAGAAAAGGACAACGTGATTGCTGTAATTGGTGATGGTGCCATGACAGCT GGTCAAGCTTATGAAGCCATGAACAATGCTGGATATCTTGATTCTGATATGATTGTTATTCTAAATGATAATAGACAGGT CTCTCTACCAACTGCTACTCTTGATGGTCCCACCCCACCTGTAGGTGCTTTGAGTAGCGCTCTCAGCAGGTTACAATCAA ATAGACCTCTCAGAGAACTGAGAGAGGTTGCAAAGGGAGTAACTAAACAAATTGGTGGCCCTATGCATGAATTGGCTGCA AAAGTTGATGAATATGCTCGCGGCATGATCAGCGGTTCTGGATCAACACTGTTTGAAGAGCTTGGGCTGTACTATATTGG TCCTGTTGATGGTCATAACATAGATGATCTTGTTGCCATTCTCAATGAAGTTAAAAGTACCAAAACAGCTGGTCCTGTAC TTATCCATGTTGTCACTGAAAAAGGCCGCGGATACCCATATGCAGAAAAAGCAGCAGACAAGTACCATGGAGTTACCAAG TTTGATCCAGCAACTGGGAAACAATTCAAAGCCAAGCCAACCACCCAGTCATACACAACATACTTTGCAGAAGCTTTGAT TGCAGAAGCAGAAGCTGACAAAAACATTGTAGGAATCCATGCTGCAATGGGTGGTGGAACTGGCATGAATCTATTCCAGA AGTATTTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCGGGTCTGGCTTGTGAA GGTCTTAAGCCTTTTTGTGTAATTTACTCATCATTCATGCAGAGAGCTTATGACCAGGTGGTGCATGATGTGGATCTTCA GAAGCTGCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGAGCAGATGGTCCAACCCACTGTGGTGCTTTTGATG TCACTTTTATGGCATGTCTCCCAAACATGGTTGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTCCACATGGTTGCTACT GCAGCTACCATTGATGATCGACCTAGTTGCCTCAGATATCCAAGGGGAAATGGGGTTGGTGTTGAATTACCACAATGGAA CAAAGGCACTCCTCTTGAGATTGGAAAAGGTAGGATTTTGATTGGAGGGGAAAGAGTGGCCCTCTTGGGCTATGGATCAG CTGTTCAGAGCTGTGTGGCTGCAGCTTCCTTACTGGAACACCATGGCATGCATGTAACAGTGGCTGATGCACGTTTCTGC AAACCATTGGATCATTCCCTTATTCGTAGCCTAGCAAAATCACATGAGATTTTGATCACTGTAGAAGAAGGATCAATAGG GGGATTTGGGTCTCATGTTGTTCAGTTCATGGCCCTTGATGGTCTTCTTGATGGAAAATTGAAGTGGAGGCCAATGGTTC TTCCTGATTGTTACATTGATCATGGATCACCTGCTGATCAATTGTCTCAAGCTGGTCTTACACCATCTCACATAGCAGCA ACAGTTTTGAACATGCTTGGACAAACAAGAGAGGCACTAGAGGTCATGTCATGA
Protein sequence (LotjaGi6g1v0304300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEYHSQRPPTPLLDTINYPIHMKNLTTKELKQLADELRSDVIFKVSRTGGHLGSSLGVVELTVALHYVFNAPKDKILWD VGHQSYPHKMLTGRRGKMNTLRQTDGLSGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKGEKDNVIAVIGDGAMTA GQAYEAMNNAGYLDSDMIVILNDNRQVSLPTATLDGPTPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAA KVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVAILNEVKSTKTAGPVLIHVVTEKGRGYPYAEKAADKYHGVTK FDPATGKQFKAKPTTQSYTTYFAEALIAEAEADKNIVGIHAAMGGGTGMNLFQKYFPTRCFDVGIAEQHAVTFAAGLACE GLKPFCVIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHMVAT AATIDDRPSCLRYPRGNGVGVELPQWNKGTPLEIGKGRILIGGERVALLGYGSAVQSCVAAASLLEHHGMHVTVADARFC KPLDHSLIRSLAKSHEILITVEEGSIGGFGSHVVQFMALDGLLDGKLKWRPMVLPDCYIDHGSPADQLSQAGLTPSHIAA TVLNMLGQTREALEVMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 653 | 652 | 0.0 | ||
| PANTHER | 2 | 653 | 652 | 0.0 | – | |
| SUPERFAMILY | 11 | 398 | 388 | 1.0E-75 | ||
| Hamap | 13 | 647 | 635 | 42.06 | ||
| Pfam | 14 | 299 | 286 | 1.7E-112 | ||
| TIGRFAM | 16 | 646 | 631 | 1.0E-229 | ||
| ProSitePatterns | 39 | 58 | 20 | - | ||
| CDD | 50 | 305 | 256 | 1.29091E-123 | ||
| SUPERFAMILY | 333 | 523 | 191 | 1.49E-60 | ||
| Gene3D | 334 | 509 | 176 | 1.2E-65 | – | |
| SMART | 336 | 501 | 166 | 9.4E-68 | ||
| Pfam | 337 | 497 | 161 | 2.7E-43 | ||
| CDD | 353 | 495 | 143 | 1.91734E-67 | – | |
| ProSitePatterns | 442 | 458 | 17 | - | ||
| SUPERFAMILY | 510 | 646 | 137 | 1.22E-33 | ||
| Gene3D | 515 | 647 | 133 | 5.3E-33 | ||
| Pfam | 515 | 638 | 124 | 4.5E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi6g1v0304300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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