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IPR005474

Description

IPR005474 is a Transketolase, N-terminal.

<p>This entry represents the N-terminal domain of a group of transketolase proteins widespread among all cellular organisms.</p> <p>Transketolase [ec:2.2.1.1] (TK) catalyses the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [[cite:PUB00000209], [cite:PUB00000362]] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) [ec:2.2.1.3] (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.</p> <p>1-deoxyxylulose-5-phosphate synthase (DXP synthase) [[cite:PUB00004906]] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyses the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis [[cite:PUB00001222]]. This entry represents the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding [[cite:PUB00001222]]. This group of proteins includes transketolase enzymes [ec:2.2.1.1] and 2-oxoisovalerate dehydrogenase beta subunit [swissprot:P37941] [ec:1.2.4.4]. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 27

Transcript Name Description Predicted domains Domain count
PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356529695|ref|XP_003533424.1| 24
PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356506190|ref|XP_003521870.1| 20
PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356506190|ref|XP_003521870.1| 9
PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356506190|ref|XP_003521870.1| 12
PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cicer arietinum] gi|502151190|ref|XP_004508322.1| 24
PREDICTED: transketolase, chloroplastic-like [Cicer arietinum] gi|502121526|ref|XP_004497357.1| 8
PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356576867|ref|XP_003556551.1| 29
PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356546474|ref|XP_003541651.1| 24
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|K7LEZ7|K7LEZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 23
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|V7CGQ4|V7CGQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 23
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|V7CGQ4|V7CGQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 23
1-deoxy-D-xylulose-5-phosphate synthase, Transketolase; TAIR: AT2G45290.1 Transketolase; Swiss-Prot: sp|F4IW47|TKTC2_ARATH Transketolase-2, chloroplastic; TrEMBL-Plants: tr|A0A0L9UT98|A0A0L9UT98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0434600 25
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|I1KX60|I1KX60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 23
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 23
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A075EAT7|A0A075EAT7_ASTME 1-deoxy-D-xylulose 5-phosphate synthase; Found in the gene: LotjaGi4g1v0173400 23
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|Q6EJC9|Q6EJC9_PUEML 1-deoxy-D-xylulose 5-phosphate synthase; Found in the gene: LotjaGi4g1v0347600 23
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A1J7II68|A0A1J7II68_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0347600 23
1-deoxy-D-xylulose-5-phosphate synthase, Transketolase; TAIR: AT2G45290.1 Transketolase; Swiss-Prot: sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic; TrEMBL-Plants: tr|A0A151RWZ7|A0A151RWZ7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0360800 29
1-deoxy-D-xylulose-5-phosphate synthase, Transketolase; TAIR: AT3G60750.1 Transketolase; Swiss-Prot: sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic; TrEMBL-Plants: tr|A0A151RWZ7|A0A151RWZ7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0360800 28
1-deoxy-D-xylulose-5-phosphate synthase 1; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|I1M1A4|I1M1A4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 23
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 23
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 23
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 23
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 23
1-deoxy-D-xylulose-5-phosphate synthase 1; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 22
1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 23
1-deoxy-D-xylulose-5-phosphate synthase 1; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd07033 CDD 1 3.70