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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005474
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 27 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.709s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1455360.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356529695|ref|XP_003533424.1| chr2 23010999 23015473 -
2 domain predictions
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Lj3g3v2737470.1
n.a. PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356506190|ref|XP_003521870.1| chr3 33775613 33779457 -
2 domain predictions
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Lj3g3v2737470.2
n.a. PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356506190|ref|XP_003521870.1| chr3 33777033 33778478 -
2 domain predictions
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Lj3g3v2737470.3
n.a. PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356506190|ref|XP_003521870.1| chr3 33777033 33779457 -
3 domain predictions
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Lj4g3v2374920.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cicer arietinum] gi|502151190|ref|XP_004508322.1| chr4 32782999 32789304 -
2 domain predictions
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Lj5g3v2291280.1
n.a. PREDICTED: transketolase, chloroplastic-like [Cicer arietinum] gi|502121526|ref|XP_004497357.1| chr5 33519439 33520399 -
2 domain predictions
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Lj5g3v2292500.1
n.a. PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356576867|ref|XP_003556551.1| chr5 33546784 33550422 +
3 domain predictions
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Lj6g3v1916060.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356546474|ref|XP_003541651.1| chr6 21633629 21638522 +
2 domain predictions
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LotjaGi2g1v0328900.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|K7LEZ7|K7LEZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80419666 80424353 -
2 domain predictions
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LotjaGi2g1v0328900.5
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|V7CGQ4|V7CGQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80420163 80423974 -
2 domain predictions
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LotjaGi2g1v0328900.6
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|V7CGQ4|V7CGQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80420163 80424006 -
2 domain predictions
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LotjaGi3g1v0434600.1
n.a. 1-deoxy-D-xylulose-5-phosphate synthase, Transketolase; TAIR: AT2G45290.1 Transketolase; Swiss-Prot: sp|F4IW47|TKTC2_ARATH Transketolase-2, chloroplastic; TrEMBL-Plants: tr|A0A0L9UT98|A0A0L9UT98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0434600 LjG1.1_chr3 84620085 84624400 -
4 domain predictions
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LotjaGi4g1v0173200.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|I1KX60|I1KX60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 LjG1.1_chr4 34668880 34674283 +
2 domain predictions
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LotjaGi4g1v0173200.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 LjG1.1_chr4 34669370 34673653 +
2 domain predictions
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LotjaGi4g1v0173400.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A075EAT7|A0A075EAT7_ASTME 1-deoxy-D-xylulose 5-phosphate synthase; Found in the gene: LotjaGi4g1v0173400 LjG1.1_chr4 34750974 34755741 +
2 domain predictions
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LotjaGi4g1v0347600.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|Q6EJC9|Q6EJC9_PUEML 1-deoxy-D-xylulose 5-phosphate synthase; Found in the gene: LotjaGi4g1v0347600 LjG1.1_chr4 72655056 72662410 -
2 domain predictions
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LotjaGi4g1v0347600.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A1J7II68|A0A1J7II68_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0347600 LjG1.1_chr4 72656080 72662069 -
2 domain predictions
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LotjaGi5g1v0360800.1
n.a. 1-deoxy-D-xylulose-5-phosphate synthase, Transketolase; TAIR: AT2G45290.1 Transketolase; Swiss-Prot: sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic; TrEMBL-Plants: tr|A0A151RWZ7|A0A151RWZ7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0360800 LjG1.1_chr5 67506804 67511237 +
4 domain predictions
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LotjaGi5g1v0360800.2
n.a. 1-deoxy-D-xylulose-5-phosphate synthase, Transketolase; TAIR: AT3G60750.1 Transketolase; Swiss-Prot: sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic; TrEMBL-Plants: tr|A0A151RWZ7|A0A151RWZ7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0360800 LjG1.1_chr5 67507057 67510549 +
4 domain predictions
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LotjaGi6g1v0304300.1
n.a. 1-deoxy-D-xylulose-5-phosphate synthase 1; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|I1M1A4|I1M1A4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 LjG1.1_chr6 62171423 62176595 +
2 domain predictions
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LotjaGi6g1v0304300.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 LjG1.1_chr6 62172093 62176128 +
2 domain predictions
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LotjaGi6g1v0304300.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 LjG1.1_chr6 62172094 62176128 +
2 domain predictions
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LotjaGi6g1v0304300.4
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 LjG1.1_chr6 62172097 62176128 +
2 domain predictions
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LotjaGi6g1v0304300.5
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 LjG1.1_chr6 62172101 62176128 +
2 domain predictions
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LotjaGi6g1v0304300.6
n.a. 1-deoxy-D-xylulose-5-phosphate synthase 1; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 LjG1.1_chr6 62172127 62176128 +
2 domain predictions
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LotjaGi6g1v0304300.7
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 LjG1.1_chr6 62172180 62176128 +
2 domain predictions
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LotjaGi6g1v0304300.8
n.a. 1-deoxy-D-xylulose-5-phosphate synthase 1; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 LjG1.1_chr6 62172260 62176128 +
2 domain predictions
 –