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LotjaGi6g1v0324800.1

Overview

Field Value
Gene ID LotjaGi6g1v0324800
Transcript ID LotjaGi6g1v0324800.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Pyruvate decarboxylase; TAIR: AT5G54960.1 pyruvate decarboxylase-2; Swiss-Prot: sp|P51850|PDC1_PEA Pyruvate decarboxylase 1; TrEMBL-Plants: tr|Q684K0|Q684K0_LOTJA Pyruvate decarboxylase isozyme 1; Found in the gene: LotjaGi6g1v0324800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:64026629..64030236) extracted from Lotus japonicus Gifu genome v1.2.

ATCAAAACCGCCACAATCATCAATGGAAACCGCCACTCAACTCACCTCACCTCCTCCACCCTCCGCCTTCGACGGCACGC TCGGCCACCACCTCGCTCGCCGCCTCGTCGAGATCGGCGTCAGGGACGTCTTCTCCGTTCCCGGCGACTTCAACTTAACT CTCCTCGACCACCTCATCGGCGAGCCTCAGCTCAACGTCATCGGCTGCTGCAACGAGCTTAACGCCGGCTACGCCGCCGA CGGCTACGCTCGTGCTAAGGGTGTTGGCGCCTGCGTCGTCACCTTCACCGTCGGTGGTCTCAGCGTCCTCAACGCCATCG CCGGAGCTTACAGTGAGAATCTTCCCGTGATTTGCATAGTTGGGGGACCGAATTCCAACGACTACGGTACTAACCGGATC CTCCATCACACCATCGGGTTACCCGATTTCTCACAGGAGCTACGATGCTTTCAGACTGTCACGTGTTTCCAGGTGAGTGC TGATTTTGAAATTTGAGGCTTATTGATAATTGATTTCAGTGTTGTTGATGATGGTGGTTGTTGATTGATTGTTCAGGCTG TGGTGAATAACTTGGAAGATGCACATGAGCTTCTGGATACTGCAATTTCTACTGCTTTGAAAGAGAGCAAGCCTGTTTAC ATCAGCATTAGTTGTAATCTTCCTGCAATTCATCATCCAACTTTTGCTAGAGACCCAGTTCCATTTTTTCTTTCTCCAAA GTATGTATTCATGCATGCCTTGCCTTTAGTTCATTCATCAATCACCCTATTATGTTTTTTGTTATATCTTATATTGTTTA AGTTGTGATCCTACCAGGATTAGTGTAATGAAGCTTTTGAATTATGTTTTCAGTGATTTCTCAGTTCAATTCTTGTTAAG ACACTGATATTGATTGTTCTATGGGAAGGAATTTAGAAATATAAAATATCTATAAAAGATTACAACATTTAATGATTTTT CTATAAAACTTTTTCATTTTTTTAATTCCTTAAAGCATGTTAGAAGTCCCACATTGGCTAGAGATGTGGCCAACCAAATG CTTATTAAGGGTAGAGCAACCCTCAACTCTTGAGCTAGCTTTTGGGTTGAGTTACACCTCCCAAATTCTAATAAAGCATT TGCCATTCTTTAATTGGGTGGTGATTGGTGAAGTGAGTTACTGAGAACCATATTCATGTTTGTTCTTGCATCCTAATTTG GTCTTTTATTTTGTGCAGGGTAAGCAATCAGGAAGGATTAGAAGCAGCAGTGGAAGTAGCAGCTGCTTTTCTCAACAAAG CTGTGAAGCCAGTCATTGTGGGTGGTCCAAAACTAAGGGCACCAAAGGCACAAAAGGCTTTTCTAGAGTTTGCAGAAGCA AGTGGATATGCAATAGCTGTTATGCCATCTGGGAAGGGATTTGTGCCTGAGGATCATCCACATTTTATTGGGACATACTG GGGTGCTGTCAGTACTGGCTATTGTGGGGAGATAGTTGAGTCTGCTGATGCTTATATTTTTGTTGGCCCAATCTTCAATG ACTATAGCTCCGTTGGATACTCATTGTTGGTAAAGAAGGAGAAAGCCATCATGGTGCAGCCTAATCGGGTCACCATTGGC AATGGCCCTTCCTTGGGCTGGGTTTTCATGGCTGATTTCTTAACTGCATTGTCTAAGAAGGTGAAGACCAACAAAGCAGC TATGGAGAATTACCAACGTATCTTTGTTCCACCCGGTATTGCTCTGACACGAGAGAAGGGTGAACCTCTTAGAGTTAATG TTCTGTTCAAGCACATTCAGGTTAGTTCTATTTATTAGCTGCTTTAAATTTTTAGGTCCAGTAGTTTTATTCATATAACA TAGTAGTAAAGTAACTGTCTGGTTCATTAGATTCATCAAGGTAACTGCTAAGCCATGTAATAGTGTCATTAGTGTGTCTT CATAAGTAGCTTCATGGTCTATGTAGATCTGTCAATTGTGACTTGTGAGTGGATTAGGATTGTGTGAAACACTGCACAGA AATGGAGAAAATAGCAATTTAAGATGATTCACTCTATATGCAACATTATTCGTGTGGTTCCCATTAGATTAATAAATCTT AGCAAGTTTTTCCTTTAAGCTCAACAATTACATATGTTTAATAGGCAATGCTAAGTGGAGATAGTGCTGTAATTGCTGAA ACTGGAGACTCATGGTTCAATTGTCAGAAACTCCGACTGCCTGCGAATTGTGGGTAAGGCATTCTCAATTTCTTGCATTA GGTGATATGCTCATTACAACCTCTAGATTGGTGTAATTAACATTGTCAAATATAAATTCCATGTTTCAGTTATGAATTCC AGATGCAGTATGGATCTATTGGTTGGTCAGTAGGCGCTACACTTGGATATGCACAGGCTGCAACAAATAAGCGTGTAATT GCTTGCATTGGTGATGGCAGTTTTCAGGTTAGTAAGATAAGATTATAAGAATGGAAACTATTTATGCATCCAGAATATTA ACAATAATATACAACTATTTTTCTTTTTTACAATAACCTGACCATGACTGTTAAAAGTTTGTGCAAAATGGGCATTATTG CTATAAACAATGGTCATACACATACATGTTAACAATTTGTTTGATGTCACTCACTACATTATAATTTTTGGCCTTTTTTT CCATTTAGACTTGGGAATGGGATCCATATTGTTAACCCCACCTTAACAGCTTGGTGATTGTTTTTTTATTGGTAAGACTT GATATGGGAGATATTTTATTAGATAAAATATGCTTATTGATGTATGATAGCCCTTGCATCAATTAAGTTAGTTATGATGG TACCTTCAAAAAAAGTTAGTTATGATGGTATTTAACTGGTTGAATAAGCTATTAGAATTTAAATTTAAAAGTGAGATGCA AATTCACCGGTAGGTGCTTTAGTTACTGCAACTGGTTGAAGTTTAGAGGGAGTCATTTGAACTCAGGTGTAGTCCTTTTA TAGTTCCTGGAGAATCCCAATCATTATTACACAACCTGGCATTTGAATAATGATATGCATGAAAAACAAGTAAACCTGCT CATTGATTAATTTTCAGCTTGATGCTGGACACATGGGAACTTACATTTTTATTTATTTATTTAGGTGACAGCACAGGATA TTTCAACCATGATCCGCTGTGAACAGAAGACCATCATCTTCCTCATCAATAATGGAGGTTATACAATTGAAGTTGAGATT CACGATGGCCCATACAATGTAATCAAGAATTGGGACTACACTCGCTTTGTTGAAGCCATCAATAATGGACAAGGCAAATG CTGGACTGCCAAGGTTAGCATACATAAATTGAACAATTCTCTAGTCTTTACCAGAACAGTCACTTCATTAACTGGAGTTG GCAATCTTGTCCTGCTCTTTGAATACCTATAAATTTCCTTTTGTGATACTAAAGAACTGTTATTGTTGTCTGTATAGGTA CGTACAGAGGATGATCTAACAGAAGCAATTGCAGCTGCCACTGGACCACAGAAAGATTCACTTTGTTTTATAGAAGTTTT TGTGCACAAGGATGATACCAGCAAAGAGTTACTAGAATGGGGATCACGTGTAGCTGCTGCTAACGGCCGTCCTCCTAATC CTCAATAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0324800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAACCGCCACTCAACTCACCTCACCTCCTCCACCCTCCGCCTTCGACGGCACGCTCGGCCACCACCTCGCTCGCCG CCTCGTCGAGATCGGCGTCAGGGACGTCTTCTCCGTTCCCGGCGACTTCAACTTAACTCTCCTCGACCACCTCATCGGCG AGCCTCAGCTCAACGTCATCGGCTGCTGCAACGAGCTTAACGCCGGCTACGCCGCCGACGGCTACGCTCGTGCTAAGGGT GTTGGCGCCTGCGTCGTCACCTTCACCGTCGGTGGTCTCAGCGTCCTCAACGCCATCGCCGGAGCTTACAGTGAGAATCT TCCCGTGATTTGCATAGTTGGGGGACCGAATTCCAACGACTACGGTACTAACCGGATCCTCCATCACACCATCGGGTTAC CCGATTTCTCACAGGAGCTACGATGCTTTCAGACTGTCACGTGTTTCCAGGCTGTGGTGAATAACTTGGAAGATGCACAT GAGCTTCTGGATACTGCAATTTCTACTGCTTTGAAAGAGAGCAAGCCTGTTTACATCAGCATTAGTTGTAATCTTCCTGC AATTCATCATCCAACTTTTGCTAGAGACCCAGTTCCATTTTTTCTTTCTCCAAAGGTAAGCAATCAGGAAGGATTAGAAG CAGCAGTGGAAGTAGCAGCTGCTTTTCTCAACAAAGCTGTGAAGCCAGTCATTGTGGGTGGTCCAAAACTAAGGGCACCA AAGGCACAAAAGGCTTTTCTAGAGTTTGCAGAAGCAAGTGGATATGCAATAGCTGTTATGCCATCTGGGAAGGGATTTGT GCCTGAGGATCATCCACATTTTATTGGGACATACTGGGGTGCTGTCAGTACTGGCTATTGTGGGGAGATAGTTGAGTCTG CTGATGCTTATATTTTTGTTGGCCCAATCTTCAATGACTATAGCTCCGTTGGATACTCATTGTTGGTAAAGAAGGAGAAA GCCATCATGGTGCAGCCTAATCGGGTCACCATTGGCAATGGCCCTTCCTTGGGCTGGGTTTTCATGGCTGATTTCTTAAC TGCATTGTCTAAGAAGGTGAAGACCAACAAAGCAGCTATGGAGAATTACCAACGTATCTTTGTTCCACCCGGTATTGCTC TGACACGAGAGAAGGGTGAACCTCTTAGAGTTAATGTTCTGTTCAAGCACATTCAGGCAATGCTAAGTGGAGATAGTGCT GTAATTGCTGAAACTGGAGACTCATGGTTCAATTGTCAGAAACTCCGACTGCCTGCGAATTGTGGTTATGAATTCCAGAT GCAGTATGGATCTATTGGTTGGTCAGTAGGCGCTACACTTGGATATGCACAGGCTGCAACAAATAAGCGTGTAATTGCTT GCATTGGTGATGGCAGTTTTCAGGTGACAGCACAGGATATTTCAACCATGATCCGCTGTGAACAGAAGACCATCATCTTC CTCATCAATAATGGAGGTTATACAATTGAAGTTGAGATTCACGATGGCCCATACAATGTAATCAAGAATTGGGACTACAC TCGCTTTGTTGAAGCCATCAATAATGGACAAGGCAAATGCTGGACTGCCAAGGTACGTACAGAGGATGATCTAACAGAAG CAATTGCAGCTGCCACTGGACCACAGAAAGATTCACTTTGTTTTATAGAAGTTTTTGTGCACAAGGATGATACCAGCAAA GAGTTACTAGAATGGGGATCACGTGTAGCTGCTGCTAACGGCCGTCCTCCTAATCCTCAATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0324800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

METATQLTSPPPPSAFDGTLGHHLARRLVEIGVRDVFSVPGDFNLTLLDHLIGEPQLNVIGCCNELNAGYAADGYARAKG VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAVVNNLEDAH ELLDTAISTALKESKPVYISISCNLPAIHHPTFARDPVPFFLSPKVSNQEGLEAAVEVAAAFLNKAVKPVIVGGPKLRAP KAQKAFLEFAEASGYAIAVMPSGKGFVPEDHPHFIGTYWGAVSTGYCGEIVESADAYIFVGPIFNDYSSVGYSLLVKKEK AIMVQPNRVTIGNGPSLGWVFMADFLTALSKKVKTNKAAMENYQRIFVPPGIALTREKGEPLRVNVLFKHIQAMLSGDSA VIAETGDSWFNCQKLRLPANCGYEFQMQYGSIGWSVGATLGYAQAATNKRVIACIGDGSFQVTAQDISTMIRCEQKTIIF LINNGGYTIEVEIHDGPYNVIKNWDYTRFVEAINNGQGKCWTAKVRTEDDLTEAIAAATGPQKDSLCFIEVFVHKDDTSK ELLEWGSRVAAANGRPPNPQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.970
6 193 188 2.2E-65 –
PANTHER
PTHR43452
9 580 572 0.0 –
PANTHER
PTHR43452:SF20
9 580 572 0.0 –
PIRSF
PIRSF036565
15 575 561 1.8E-206
IPR012110
Pfam
PF02776
19 186 168 3.5E-35
IPR012001
SUPERFAMILY
SSF52518
19 197 179 3.58E-44
IPR029061
CDD
cd07038
23 183 161 3.7961E-91 –
SUPERFAMILY
SSF52467
205 357 153 2.62E-33
IPR029035
Gene3D
G3DSA:3.40.50.1220
205 368 164 6.5E-62 –
Pfam
PF00205
217 333 117 1.3E-22
IPR012000
Gene3D
G3DSA:3.40.50.970
373 562 190 4.6E-54 –
CDD
cd02005
381 563 183 2.68399E-84 –
SUPERFAMILY
SSF52518
381 573 193 1.22E-41
IPR029061
Pfam
PF02775
426 551 126 1.6E-15
IPR011766

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0030976
Molecular function Thiamine pyrophosphate binding Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0324800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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