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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029035
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 37 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.799s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0163179.1
n.a. PREDICTED: NAD-dependent protein deacetylase SRT2-like [Cicer arietinum] gi|502137108|ref|XP_004502971.1| chr0 77109183 77111816 -
2 domain predictions
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Lj0g3v0175809.1
n.a. PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Cicer arietinum] gi|502143739|ref|XP_004505448.1| chr0 84890534 84896637 -
3 domain predictions
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Lj0g3v0269569.2
n.a. PREDICTED: NAD-dependent ADP-ribosyltransferase sirtuin-4-like [Glycine max] gi|356518787|ref|XP_003528059.1| chr0 139655645 139656982 +
2 domain predictions
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Lj0g3v0332289.1
n.a. Thiamine pyrophosphate dependent pyruvate decarboxylase family protein [Theobroma cacao] gi|508715239|gb|EOY07136.1| chr0 173854591 173858579 +
3 domain predictions
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Lj0g3v0360399.1
n.a. PREDICTED: protein PHYLLO, chloroplastic-like [Cicer arietinum] gi|502154072|ref|XP_004509573.1| chr0 189808853 189819333 -
2 domain predictions
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Lj0g3v0360399.2
n.a. PREDICTED: protein PHYLLO, chloroplastic-like [Glycine max] gi|356555334|ref|XP_003545988.1| chr0 189808853 189819333 -
2 domain predictions
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Lj1g3v1356820.1
n.a. PREDICTED: NAD-dependent protein deacetylase SRT2-like [Cicer arietinum] gi|502137108|ref|XP_004502971.1| chr1 16176119 16181635 -
3 domain predictions
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Lj1g3v1513620.1
n.a. acetolactate synthase [Medicago littoralis] gi|164453114|gb|ABY57316.1| chr1 17951523 17953891 +
3 domain predictions
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Lj1g3v2372300.1
n.a. pyruvate decarboxylase 1 [Lotus corniculatus] gi|29373077|gb|AAO72533.1| chr1 27821182 27824256 +
3 domain predictions
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Lj1g3v3646510.1
n.a. dhs1 [Glycine max] gi|351726826|ref|NP_001235604.1| chr1 42142027 42150285 -
2 domain predictions
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Lj1g3v3646510.2
n.a. dhs1 [Glycine max] gi|351726826|ref|NP_001235604.1| chr1 42142769 42150285 -
2 domain predictions
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Lj2g3v0919440.1
n.a. PREDICTED: 2-hydroxyacyl-CoA lyase-like [Glycine max] gi|356553206|ref|XP_003544949.1| chr2 14602770 14610412 +
3 domain predictions
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Lj6g3v0738970.1
n.a. PREDICTED: NAD-dependent deacetylase sirtuin-6-like [Glycine max] gi|356566429|ref|XP_003551434.1| chr6 6969205 6979905 -
3 domain predictions
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Lj6g3v0738970.2
n.a. PREDICTED: NAD-dependent deacetylase sirtuin-6-like [Glycine max] gi|356566429|ref|XP_003551434.1| chr6 6969205 6982123 -
3 domain predictions
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Lj6g3v0738970.3
n.a. PREDICTED: NAD-dependent protein deacetylase SRT1-like [Cicer arietinum] gi|502177494|ref|XP_004516096.1| chr6 6973066 6982123 -
3 domain predictions
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Lj6g3v1995950.1
n.a. pyruvate decarboxylase isozyme 1 [Lotus japonicus] gi|51587336|emb|CAG30578.1| chr6 23208020 23211952 -
3 domain predictions
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Lj6g3v1995960.1
n.a. n.a. chr6 23208067 23214172 -
3 domain predictions
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Lj6g3v2043240.1
n.a. PREDICTED: acetolactate synthase 1, chloroplastic-like [Cicer arietinum] gi|502077817|ref|XP_004485753.1| chr6 24137316 24139649 +
3 domain predictions
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Lj6g3v2043250.1
n.a. n.a. chr6 24137470 24139649 -
3 domain predictions
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LotjaGi1g1v0322700.1
n.a. NAD-dependent protein deacylase; TAIR: AT5G09230.1 sirtuin 2; Swiss-Prot: sp|Q94AQ6|SIR4_ARATH NAD-dependent protein deacylase SRT2; TrEMBL-Plants: tr|A0A0S3REZ3|A0A0S3REZ3_PHAAN NAD-dependent protein deacylase; Found in the gene: LotjaGi1g1v0322700 LjG1.1_chr1 77419287 77425298 -
2 domain predictions
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LotjaGi1g1v0338500.1
n.a. Acetolactate synthase; TAIR: AT3G48560.1 chlorsulfuron/imidazolinone resistant 1; Swiss-Prot: sp|P09114|ILVB2_TOBAC Acetolactate synthase 2, chloroplastic; TrEMBL-Plants: tr|B0FBK4|B0FBK4_9FABA Acetolactate synthase; Found in the gene: LotjaGi1g1v0338500 LjG1.1_chr1 79894993 79897452 +
2 domain predictions
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LotjaGi1g1v0443800.1
n.a. Pyruvate decarboxylase; TAIR: AT4G33070.1 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; Swiss-Prot: sp|O82647|PDC1_ARATH Pyruvate decarboxylase 1; TrEMBL-Plants: tr|Q84V95|Q84V95_LOTCO Pyruvate decarboxylase 1; Found in the gene: LotjaGi1g1v0443800 LjG1.1_chr1 94152778 94156764 +
2 domain predictions
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LotjaGi1g1v0443800.2
n.a. Pyruvate decarboxylase; TAIR: AT5G54960.1 pyruvate decarboxylase-2; Swiss-Prot: sp|P51851|PDC2_PEA Pyruvate decarboxylase 2; TrEMBL-Plants: tr|Q84V95|Q84V95_LOTCO Pyruvate decarboxylase 1; Found in the gene: LotjaGi1g1v0443800 LjG1.1_chr1 94153109 94156021 +
2 domain predictions
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LotjaGi1g1v0443800.3
n.a. Pyruvate decarboxylase; TAIR: AT4G33070.1 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; Swiss-Prot: sp|O82647|PDC1_ARATH Pyruvate decarboxylase 1; TrEMBL-Plants: tr|Q84V95|Q84V95_LOTCO Pyruvate decarboxylase 1; Found in the gene: LotjaGi1g1v0443800 LjG1.1_chr1 94153109 94156021 +
2 domain predictions
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LotjaGi1g1v0610600.1
n.a. Deoxyhypusine synthase; TAIR: AT5G05920.1 deoxyhypusine synthase; Swiss-Prot: sp|Q9FI94|DHYS_ARATH Deoxyhypusine synthase; TrEMBL-Plants: tr|C6ZS19|C6ZS19_SOYBN Dhs1; Found in the gene: LotjaGi1g1v0610600 LjG1.1_chr1 115479574 115488010 -
2 domain predictions
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LotjaGi2g1v0238100.1
n.a. Acetolactate synthase; TAIR: AT5G17380.1 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; Swiss-Prot: sp|Q9LF46|HACL_ARATH 2-hydroxyacyl-CoA lyase; TrEMBL-Plants: tr|A0A151TX24|A0A151TX24_CAJCA 2-hydroxyacyl-CoA lyase 1; Found in the gene: LotjaGi2g1v0238100 LjG1.1_chr2 69887445 69892017 +
2 domain predictions
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LotjaGi3g1v0148500.1
n.a. Electron transfer flavoprotein subunit alpha, mitochondrial; TAIR: AT1G50940.1 electron transfer flavoprotein alpha; Swiss-Prot: sp|Q9C6I6|ETFA_ARATH Electron transfer flavoprotein subunit alpha, mitochondrial; TrEMBL-Plants: tr|I3SFR5|I3SFR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0148500 LjG1.1_chr3 19968130 19974648 +
2 domain predictions
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LotjaGi3g1v0148500.2
n.a. Electron transfer flavoprotein subunit alpha; TAIR: AT1G50940.1 electron transfer flavoprotein alpha; Swiss-Prot: sp|Q9C6I6|ETFA_ARATH Electron transfer flavoprotein subunit alpha, mitochondrial; TrEMBL-Plants: tr|I3SFR5|I3SFR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0148500 LjG1.1_chr3 19968479 19974306 +
2 domain predictions
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LotjaGi3g1v0148500.3
n.a. Electron transfer flavoprotein subunit alpha; TAIR: AT1G50940.1 electron transfer flavoprotein alpha; Swiss-Prot: sp|Q9C6I6|ETFA_ARATH Electron transfer flavoprotein subunit alpha, mitochondrial; TrEMBL-Plants: tr|I3SFR5|I3SFR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0148500 LjG1.1_chr3 19968479 19974306 +
2 domain predictions
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LotjaGi3g1v0195000.1
n.a. Pyruvate decarboxylase; TAIR: AT5G54960.1 pyruvate decarboxylase-2; Swiss-Prot: sp|Q9FFT4|PDC2_ARATH Pyruvate decarboxylase 2; TrEMBL-Plants: tr|A0A061EQM3|A0A061EQM3_THECC Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; Found in the gene: LotjaGi3g1v0195000 LjG1.1_chr3 28333445 28337804 +
2 domain predictions
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LotjaGi3g1v0195000.2
n.a. Pyruvate decarboxylase; TAIR: AT5G54960.1 pyruvate decarboxylase-2; Swiss-Prot: sp|Q9FFT4|PDC2_ARATH Pyruvate decarboxylase 2; TrEMBL-Plants: tr|A0A061EQM3|A0A061EQM3_THECC Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; Found in the gene: LotjaGi3g1v0195000 LjG1.1_chr3 28333651 28337288 +
2 domain predictions
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LotjaGi3g1v0195000.3
n.a. Pyruvate decarboxylase; TAIR: AT5G54960.1 pyruvate decarboxylase-2; Swiss-Prot: sp|Q9FFT4|PDC2_ARATH Pyruvate decarboxylase 2; TrEMBL-Plants: tr|A0A061EQM3|A0A061EQM3_THECC Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; Found in the gene: LotjaGi3g1v0195000 LjG1.1_chr3 28333651 28337288 +
2 domain predictions
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LotjaGi4g1v0153600.1
n.a. 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; TAIR: AT1G68890.1 2-oxoglutarate decarboxylase/hydro-lyase/magnesium ion-binding protein; Swiss-Prot: sp|Q15KI9|PHYLO_ARATH Protein PHYLLO, chloroplastic; TrEMBL-Plants: tr|K7MEA2|K7MEA2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0153600 LjG1.1_chr4 25696212 25743420 +
2 domain predictions
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LotjaGi6g1v0142500.1
n.a. NAD-dependent protein deacetylase; TAIR: AT5G55760.1 sirtuin 1; Swiss-Prot: sp|Q9FE17|SIR1_ARATH NAD-dependent protein deacetylase SRT1; TrEMBL-Plants: tr|V7BPZ4|V7BPZ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0142500 LjG1.1_chr6 41189202 41203259 -
2 domain predictions
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LotjaGi6g1v0142500.2
n.a. NAD-dependent protein deacetylase; TAIR: AT5G55760.1 sirtuin 1; Swiss-Prot: sp|Q9FE17|SIR1_ARATH NAD-dependent protein deacetylase SRT1; TrEMBL-Plants: tr|V7BPZ4|V7BPZ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0142500 LjG1.1_chr6 41189701 41200896 -
2 domain predictions
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LotjaGi6g1v0324800.1
n.a. Pyruvate decarboxylase; TAIR: AT5G54960.1 pyruvate decarboxylase-2; Swiss-Prot: sp|P51850|PDC1_PEA Pyruvate decarboxylase 1; TrEMBL-Plants: tr|Q684K0|Q684K0_LOTJA Pyruvate decarboxylase isozyme 1; Found in the gene: LotjaGi6g1v0324800 LjG1.1_chr6 64026629 64030236 -
2 domain predictions
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LotjaGi6g1v0333700.1
n.a. Acetolactate synthase; TAIR: AT3G48560.1 chlorsulfuron/imidazolinone resistant 1; Swiss-Prot: sp|P09114|ILVB2_TOBAC Acetolactate synthase 2, chloroplastic; TrEMBL-Plants: tr|D2DJQ3|D2DJQ3_SOYBN Acetolactate synthase; Found in the gene: LotjaGi6g1v0333700 LjG1.1_chr6 64839012 64841002 +
2 domain predictions
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