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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002048
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We have found 472 results. Now displaying 10 of 10 with 50 rows per page. This search has taken 6.986s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi6g1v0178500.1
n.a. Calcium-dependent protein kinase, putative; TAIR: AT5G12180.1 calcium-dependent protein kinase 17; Swiss-Prot: sp|Q9FMP5|CDPKH_ARATH Calcium-dependent protein kinase 17; TrEMBL-Plants: tr|A0A072TK46|A0A072TK46_MEDTR Calmodulin-domain kinase CDPK protein; Found in the gene: LotjaGi6g1v0178500 LjG1.1_chr6 47036974 47040809 -
4 domain predictions
1 GO term
LotjaGi6g1v0178500.2
n.a. Calcium-dependent protein kinase, putative; TAIR: AT5G12180.1 calcium-dependent protein kinase 17; Swiss-Prot: sp|Q9FMP5|CDPKH_ARATH Calcium-dependent protein kinase 17; TrEMBL-Plants: tr|A0A072TK46|A0A072TK46_MEDTR Calmodulin-domain kinase CDPK protein; Found in the gene: LotjaGi6g1v0178500 LjG1.1_chr6 47037476 47040701 -
4 domain predictions
1 GO term
LotjaGi6g1v0189800.1
n.a. Calmodulin; TAIR: AT2G27030.3 calmodulin 5; Swiss-Prot: sp|P62200|CALM1_DAUCA Calmodulin-1/11/16; TrEMBL-Plants: tr|A0A1D6K120|A0A1D6K120_MAIZE Uncharacterized protein; Found in the gene: LotjaGi6g1v0189800 LjG1.1_chr6 48533869 48541208 +
5 domain predictions
1 GO term
LotjaGi6g1v0189800.2
n.a. Calmodulin; TAIR: AT3G43810.2 calmodulin 7; Swiss-Prot: sp|A2WN93|CALM1_ORYSI Calmodulin-1; TrEMBL-Plants: tr|K3XLP3|K3XLP3_SETIT Uncharacterized protein; Found in the gene: LotjaGi6g1v0189800 LjG1.1_chr6 48533869 48541208 +
5 domain predictions
1 GO term
LotjaGi6g1v0189800.3
n.a. Calmodulin; TAIR: AT2G41110.2 calmodulin 2; Swiss-Prot: sp|A2WN93|CALM1_ORYSI Calmodulin-1; TrEMBL-Plants: tr|K3XLP3|K3XLP3_SETIT Uncharacterized protein; Found in the gene: LotjaGi6g1v0189800 LjG1.1_chr6 48536949 48538750 +
6 domain predictions
1 GO term
LotjaGi6g1v0189800.4
n.a. Calmodulin; TAIR: AT2G41110.2 calmodulin 2; Swiss-Prot: sp|A2WN93|CALM1_ORYSI Calmodulin-1; TrEMBL-Plants: tr|F4IJ46|F4IJ46_ARATH Calmodulin 2; Found in the gene: LotjaGi6g1v0189800 LjG1.1_chr6 48536949 48538750 +
6 domain predictions
1 GO term
LotjaGi6g1v0189800.5
n.a. Calmodulin; TAIR: AT3G43810.2 calmodulin 7; Swiss-Prot: sp|P62200|CALM1_DAUCA Calmodulin-1/11/16; TrEMBL-Plants: tr|A0A1D6K120|A0A1D6K120_MAIZE Uncharacterized protein; Found in the gene: LotjaGi6g1v0189800 LjG1.1_chr6 48536949 48538750 +
5 domain predictions
1 GO term
LotjaGi6g1v0189800.6
n.a. Calmodulin; TAIR: AT2G41110.2 calmodulin 2; Swiss-Prot: sp|A2WN93|CALM1_ORYSI Calmodulin-1; TrEMBL-Plants: tr|K3XLP3|K3XLP3_SETIT Uncharacterized protein; Found in the gene: LotjaGi6g1v0189800 LjG1.1_chr6 48536949 48538750 +
6 domain predictions
1 GO term
LotjaGi6g1v0189800.7
n.a. Calmodulin; TAIR: AT3G43810.2 calmodulin 7; Swiss-Prot: sp|P62200|CALM1_DAUCA Calmodulin-1/11/16; TrEMBL-Plants: tr|A0A1D6K120|A0A1D6K120_MAIZE Uncharacterized protein; Found in the gene: LotjaGi6g1v0189800 LjG1.1_chr6 48538078 48538750 +
5 domain predictions
1 GO term
LotjaGi6g1v0221200.1
n.a. Respiratory burst oxidase-like protein; TAIR: AT1G19230.2 Riboflavin synthase-like superfamily protein; Swiss-Prot: sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E; TrEMBL-Plants: tr|I1MHJ4|I1MHJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0221200 LjG1.1_chr6 52530871 52538672 +
3 domain predictions
1 GO term
LotjaGi6g1v0221200.2
n.a. Respiratory burst oxidase-like protein; TAIR: AT1G19230.2 Riboflavin synthase-like superfamily protein; Swiss-Prot: sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E; TrEMBL-Plants: tr|I1MHJ4|I1MHJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0221200 LjG1.1_chr6 52530871 52538672 +
3 domain predictions
1 GO term
LotjaGi6g1v0281000.1
n.a. Calcineurin B-like protein; TAIR: AT4G26570.1 calcineurin B-like 3; Swiss-Prot: sp|Q3HRP5|CNBL2_ORYSJ Calcineurin B-like protein 2; TrEMBL-Plants: tr|B0I559|B0I559_PHAVU Calcineurin B-like protein; Found in the gene: LotjaGi6g1v0281000 LjG1.1_chr6 59740419 59744357 -
5 domain predictions
1 GO term
LotjaGi6g1v0288500.1
n.a. EH domain-containing protein 1; TAIR: AT4G05520.1 EPS15 homology domain 2; Swiss-Prot: sp|B3LF48|EHD2_ARATH EH domain-containing protein 2; TrEMBL-Plants: tr|I1MFL9|I1MFL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0288500 LjG1.1_chr6 60548068 60552537 -
3 domain predictions
1 GO term
LotjaGi6g1v0339200.1
n.a. External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G05020.1 NAD(P)H dehydrogenase B2; Swiss-Prot: sp|Q94BV7|NDB2_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial; TrEMBL-Plants: tr|A0A151T7I0|A0A151T7I0_CAJCA Putative NADH dehydrogenase; Found in the gene: LotjaGi6g1v0339200 LjG1.1_chr6 65329825 65335259 +
2 domain predictions
1 GO term
LotjaGi6g1v0339200.2
n.a. External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G05020.1 NAD(P)H dehydrogenase B2; Swiss-Prot: sp|Q94BV7|NDB2_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial; TrEMBL-Plants: tr|I1MEA0|I1MEA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0339200 LjG1.1_chr6 65330232 65334593 +
2 domain predictions
1 GO term
LotjaGi6g1v0339200.3
n.a. External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G05020.1 NAD(P)H dehydrogenase B2; Swiss-Prot: sp|Q94BV7|NDB2_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial; TrEMBL-Plants: tr|I1MEA0|I1MEA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0339200 LjG1.1_chr6 65330297 65334593 +
2 domain predictions
1 GO term
LotjaGi6g1v0339200.4
n.a. External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G05020.1 NAD(P)H dehydrogenase B2; Swiss-Prot: sp|Q94BV7|NDB2_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial; TrEMBL-Plants: tr|I1MEA0|I1MEA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0339200 LjG1.1_chr6 65330297 65334593 +
2 domain predictions
1 GO term
LotjaGi6g1v0339200.5
n.a. External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G05020.1 NAD(P)H dehydrogenase B2; Swiss-Prot: sp|Q94BV7|NDB2_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial; TrEMBL-Plants: tr|V7BQH2|V7BQH2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0339200 LjG1.1_chr6 65330297 65334593 +
2 domain predictions
1 GO term
LotjaGi6g1v0342200.1
n.a. Calcium-binding family protein; TAIR: AT4G27280.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9ZPX9|KIC_ARATH Calcium-binding protein KIC; TrEMBL-Plants: tr|A0A151RB94|A0A151RB94_CAJCA Caltractin; Found in the gene: LotjaGi6g1v0342200 LjG1.1_chr6 65551495 65552798 -
2 domain predictions
1 GO term
LotjaGi6g1v0342200.2
n.a. Calcium-binding family protein; TAIR: AT4G27280.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9ZPX9|KIC_ARATH Calcium-binding protein KIC; TrEMBL-Plants: tr|A0A151RB94|A0A151RB94_CAJCA Caltractin; Found in the gene: LotjaGi6g1v0342200 LjG1.1_chr6 65551769 65552382 -
2 domain predictions
1 GO term
LotjaGi6g1v0355200.2
n.a. Phosphatidylserine decarboxylase proenzyme; TAIR: AT5G57190.1 phosphatidylserine decarboxylase 2; Swiss-Prot: sp|F4KAK5|PSD2_ARATH Phosphatidylserine decarboxylase proenzyme 2; TrEMBL-Plants: tr|I1KUF4|I1KUF4_SOYBN Phosphatidylserine decarboxylase proenzyme 2; Found in the gene: LotjaGi6g1v0355200 LjG1.1_chr6 66717178 66726533 +
5 domain predictions
1 GO term
LotjaGi6g1v0355200.3
n.a. Phosphatidylserine decarboxylase proenzyme; TAIR: AT5G57190.1 phosphatidylserine decarboxylase 2; Swiss-Prot: sp|F4KAK5|PSD2_ARATH Phosphatidylserine decarboxylase proenzyme 2; TrEMBL-Plants: tr|I1KUF5|I1KUF5_SOYBN Phosphatidylserine decarboxylase proenzyme 2; Found in the gene: LotjaGi6g1v0355200 LjG1.1_chr6 66717272 66725951 +
3 domain predictions
1 GO term