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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0288500 |
| Transcript ID | LotjaGi6g1v0288500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | EH domain-containing protein 1; TAIR: AT4G05520.1 EPS15 homology domain 2; Swiss-Prot: sp|B3LF48|EHD2_ARATH EH domain-containing protein 2; TrEMBL-Plants: tr|I1MFL9|I1MFL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0288500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60548068..60552537) extracted from Lotus japonicus Gifu genome v1.2.
CCCCAACTCAATGGCGCCCAAATTCAAGAGTTCAAAAATGGAAAAGAAGCAATCCAATGCGGACCCGTCCACATAAACAT ACGGTGGACATCCAATCAGAACCTCACATCAAAGTATAGCAACCCGCCAATCCGTAATCTCACTTCAGAATCCACGTGTC AAAATCAGACACACATGAACCACCCTTTGAAACCTGATATAATAAGTAAGAAGAAGAAATAACCCTTCCCCTCTCATCTC TGCAATTCAAATTCCAAACTCTGGTTAGAGAGAAATGGTAGTTTCGAAGATGAAGACGACGGCGCGCTCCAAATCGGAAT CGAAGACCTACGAAGAATGGTTCAAATTGGCAGATTCAGGTTAGTGTTGTTTGTTTCTCTCACTCTCTTTCTCTTCACGT TGCAATTTTCGAATCGATTCATTTTTTGATTTGGTGATTTTCATTGCAGATGGTGATGGTCGCATCAGTGGGAACGATGC TACCAATTTCTTCGCTCTCTCGAACCTGTCTCGCTCTCAACTCAAGCAGCTTTGGGCTCTCGCTGATACCAAGCGACAAG GCTTTCTTTCTTTCCCTGAGTTCGTTACTGCGATGCAGGTCGGTTCTCGAATCTAACTCATGTATCGTTTCTGATTCTGG TTGTATGAAGTGGATTTTGATGAATTCAATTTTCGTTTCCACACAAAACAGTTGGTTTCACTGGCACAAGCAGAATACGA ATTGAACTCAGATATCCTCAAAACTGAAAGTAAGTGTAGTAGCATTGTTTGGATTACATGATGAAATTTGCAATTGTAAA CGCAGATTCTGAATATTTTTTAACTCGTTTCAATTGAATTCGCTTTATGATTTTCGCGAATCGCAGTTGACAAGGAGAAT ATCAAACCTCCGGTGATGGAAGGACTTGATGCTTTTGCGAAGGTGAGATTGAGCAGTACTTTTTATCTCACTTTGTGATT TATAGCTTAGATCTTATAATTTCTATGCATTCTTTAGATTCTGTTTCCTTATTGTGTTCTTTCCTTTTCTTATCAGAAGA AGAGTTTAACAATTAATACCCTACCAGAAGTAAATGGTTAGATACATGACTTATTCTCTTTGATTATTCTTAGTATTGTA TTCATTATTTCAGTAATTGATTAGGTTTTTTCACTGATGATATGCAGAGATTGCTAAGCCTCAACCATTTCTGGCTAACC CATGGTTTGCGTCAAAATCTTCGAAGAAGGTGATTCTCGTAATCTATTCTCGGATTTTTAGGTCTTACTTGTTTTTTATG AAATTAAAATTTTCAAGTTACATGTTTTGTGCAAACATATTATGAAATCTATGTTGTTTAGTTAGTTGTTGGGGCTGGAT TTTATTATTTTGAAGAAGAATTCTCCATTACTTTTTATTTGATAGTCTAGTTATTACAGTCAAGAGATCCTTCAATCTTG CCCACGAGCAATGCTTGCTGAAAAACCTAATTAAAAGATTTCTAACACAATTATTGCAGTTTGGGGTTGTGTATAGGTTT TTACTTAATATTCAAGTGGTAGATGATACTCTCCGTGATTACTAGAATTCATCTTCCTTTTGTTGTTCTTCTAGCTGAAG AGGATAATTTGAAATAATGAACAATAAAATAAGGCCTCTTCTTTTCACTGTGAAGCAATATTTAGGTAATATTTGTTATA ATTGATTTTCTGATGCCGAGGTGCTTGGTGAATGTTGTCAATTTTTCCACACTGTAATCATGGACTGTAGTATGTTTCTC CAGTCTCCACTTGTTCGTATTTTTTCGAGAGATAGATGTTCATTTGTTAAGAATTCATACTTCTTTTGAATTTGAATGTT TTTTGGGATCATTTCTTCTCAAATATCAAAATCTACTGCATATAGTTCTCCTGAATTTTAATGTTACCATATATATTCTA ATCATGCTAGTTTGTTTTTCTTAGTTACCTCCAAGTGCAGTTACATCAATAGTTGATGGATTGAAGAGACTGTATAATGA GAGGCTAAAGCCCCTGGAAATCGCTTATCAATATAATGATTTTGCATCCCCATTGTTGGTAAGTGTTGTTTGCATCCAAT GTACAAATAAAATTTATCACCTGCATGTGTGCCATGGACATAGTACTTGCTCTACTTAGCATGTCTTGTCCTGATAAATT TAATGATATTAACTTAAAAAATGTCTTCTTTTCTCCCTTTCAGACCAGCAGTGACTTTGATGCGAAACCCATGGTCATGC TTCTTGGTCAATATTCCACAGGAAAAACAACATTTATAAAACATTTGCTAAAATGTGACTATCCAGGTTGGTTAAGCTGT GGGTGACTTAGTAACATAAATAAACTACAATATTGATCTTGTTCCTATATTTTTTTAAACTCTTTCTTTGACAGGAGCAC ATGTTGGACCAGAACCTACAACCGATAGATTTGTTATTGTTATGGTACAGTACCTTTTTGTCCCAATATTACCTCTTGAA ATCAATTAAGTTTCAACAGAAAAACATTCGTCTGTATGATAGAGATCATATTGATATTGTACTCTTATTTTTCTTCCATA AGTTGTGTTGCATATAATGTTTATGGGATTTGCTTCAAAACCCCCGATCTTTTTTTTAATAGTCAGGACCTGATGAGAGG AGTGTTCCTGGAAATACTATAGCTGTTGATGCTGACATGCCTTTTAGTGGCCTAACAACATTTGGAGGTTCATTCTTATC GAAGTTCCAATGTTCTCAAATGCCACATCCAGTGAGTTTTATTTATATTTCCAATCCTGGTGACTTTGTGATTATTTGTG CTTGAACTTGAAGCAATTTTTCTTTCAGTTGCTAGATGAAGTAACAATTGTGGACACTCCTGGTGTCCTATCTGGAGAGA AACAAAGGACTCAACGAAGCTATGATTTCACTGGTGTTGTTTCTTGGTTTGCTGCCAAATGTGATCTCATTCTTCTCCTA TTTGATCCCCATAAACTTGACATCAGTGATGAGTTTAAACGAGTAATTGCATCTCTACATGGTAATGATGATAAGATACG GGTGGTTTTGAACAAGGCAGACCAAGTTAATACTCAACAGGTAAGACACTGAACAAAATTTAACCTGATTTGTTGTATTT CTAATCTTATGCTACTTACACACCCAATTGTAATATTGTAGCTTATGAGAGTTTATGGAGCCTTGATGTGGTCATTGGGG AAAGTTTTAAATACCCCTGAAGTTTCACGTGTATACATTGGGTAAGTTTTGTTATCTTTAAATATGTCTAATGATCTAGT GCCTTGTTTACAAGTGTACTTAACCATACTTCTAAACTTATACCATCTAGTGGGTGATTTGAAATTTCAAGTAAGATGTC AGCATACTCTTGGGCTTATTCGGAGTTTTAGTGAACAATTTGATATTTCTGTTTATTATTTACATAGCTTTTAGAAATTT GCATCTAATATATCCTTCTTTCCTGACTTCACAAGGTCATTTAATGATAAACCTATGGATGGAGGCTGTTCATTAGGACG GGATCTTTTTGAGAAGGAACAGAATGATCTACTAGCGGATTTGGTAGATATTCCAAAGAAGGCTGTCGATCGTCGGGTAT TGTCACTTATTTCATATAATCTGTGACCTGTTGGTGCAATTTGAGTCAATTATACCCCTCATGCCTGCTACTATATATTT ATTTCTGGTTTCTTTTGTTGTCAATTGAATGGTGCAGATAAATGAATTCGTTAAACGTGCTAGATCTGCAAAGATTCATG CATATATAATTAGCCATCTTAAGAAGGAGATGCCTGCAATAATGGGCAAAGCCAAGGCTCAACAAAAGCTTATAGATAAC CTTGATGTTGAATTTGCAAAGGTCTTTCCTTCTCAACTTAACCCTTCCTTCCTTCCTTGGTTGCTTAATTTCTCTATTGC TTATAATTTTTGTTTTGCAAAACAGGTTCAAAGGGAGTATCATCTACCAGCCGGTGATTTTCCCAATGTAGAGCACTTCA AAGAAGTTTTAAGCCGTTATAGCATCGACAAATTTGAGAAACTAAAGCCTAAAATGATTCAAGCAGTGGATGACATGCTT GGGTATGAAATACCAGAGCTTTTGAGGAAATTCAGAAATCCTTATGAATAGTTGAAAAATGTTTTAGCATGTTATCAGTT GTAATATAAATTTTAGTGCCAGATTTTAATGTTTGAATTCATTATTACTGGATTGTGGATCATTTCATTTTCACTGTGAA ATGTCGATATTTGGTTTCGTTATTAGACCCTAGTAAACATTTGTAGAACATTCCTATTTTATTTGCCTTATAACATTTGT AGGGCACCATATGAAGATGCTCTTTTATCAAACTTTTGTAGTGCTTTCGTTTGAGTGGGAGCTTGGGACCACCATGTTCG TAAACAGTGAATGTAGTGCTGATAAGAAATGAGTAGTTTTTTGAAATATTAAAAAAGGTAAAATAAAGAG
CDS sequence (LotjaGi6g1v0288500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGTTTCGAAGATGAAGACGACGGCGCGCTCCAAATCGGAATCGAAGACCTACGAAGAATGGTTCAAATTGGCAGA TTCAGATGGTGATGGTCGCATCAGTGGGAACGATGCTACCAATTTCTTCGCTCTCTCGAACCTGTCTCGCTCTCAACTCA AGCAGCTTTGGGCTCTCGCTGATACCAAGCGACAAGGCTTTCTTTCTTTCCCTGAGTTCGTTACTGCGATGCAGTTGGTT TCACTGGCACAAGCAGAATACGAATTGAACTCAGATATCCTCAAAACTGAAATTGACAAGGAGAATATCAAACCTCCGGT GATGGAAGGACTTGATGCTTTTGCGAAGAAGAAGAGTTTAACAATTAATACCCTACCAGAAGTAAATGAGATTGCTAAGC CTCAACCATTTCTGGCTAACCCATGGTTTGCGTCAAAATCTTCGAAGAAGTTACCTCCAAGTGCAGTTACATCAATAGTT GATGGATTGAAGAGACTGTATAATGAGAGGCTAAAGCCCCTGGAAATCGCTTATCAATATAATGATTTTGCATCCCCATT GTTGACCAGCAGTGACTTTGATGCGAAACCCATGGTCATGCTTCTTGGTCAATATTCCACAGGAAAAACAACATTTATAA AACATTTGCTAAAATGTGACTATCCAGGAGCACATGTTGGACCAGAACCTACAACCGATAGATTTGTTATTGTTATGTCA GGACCTGATGAGAGGAGTGTTCCTGGAAATACTATAGCTGTTGATGCTGACATGCCTTTTAGTGGCCTAACAACATTTGG AGGTTCATTCTTATCGAAGTTCCAATGTTCTCAAATGCCACATCCATTGCTAGATGAAGTAACAATTGTGGACACTCCTG GTGTCCTATCTGGAGAGAAACAAAGGACTCAACGAAGCTATGATTTCACTGGTGTTGTTTCTTGGTTTGCTGCCAAATGT GATCTCATTCTTCTCCTATTTGATCCCCATAAACTTGACATCAGTGATGAGTTTAAACGAGTAATTGCATCTCTACATGG TAATGATGATAAGATACGGGTGGTTTTGAACAAGGCAGACCAAGTTAATACTCAACAGCTTATGAGAGTTTATGGAGCCT TGATGTGGTCATTGGGGAAAGTTTTAAATACCCCTGAAGTTTCACGTGTATACATTGGGTCATTTAATGATAAACCTATG GATGGAGGCTGTTCATTAGGACGGGATCTTTTTGAGAAGGAACAGAATGATCTACTAGCGGATTTGGTAGATATTCCAAA GAAGGCTGTCGATCGTCGGATAAATGAATTCGTTAAACGTGCTAGATCTGCAAAGATTCATGCATATATAATTAGCCATC TTAAGAAGGAGATGCCTGCAATAATGGGCAAAGCCAAGGCTCAACAAAAGCTTATAGATAACCTTGATGTTGAATTTGCA AAGGTTCAAAGGGAGTATCATCTACCAGCCGGTGATTTTCCCAATGTAGAGCACTTCAAAGAAGTTTTAAGCCGTTATAG CATCGACAAATTTGAGAAACTAAAGCCTAAAATGATTCAAGCAGTGGATGACATGCTTGGGTATGAAATACCAGAGCTTT TGAGGAAATTCAGAAATCCTTATGAATAG
Protein sequence (LotjaGi6g1v0288500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVSKMKTTARSKSESKTYEEWFKLADSDGDGRISGNDATNFFALSNLSRSQLKQLWALADTKRQGFLSFPEFVTAMQLV SLAQAEYELNSDILKTEIDKENIKPPVMEGLDAFAKKKSLTINTLPEVNEIAKPQPFLANPWFASKSSKKLPPSAVTSIV DGLKRLYNERLKPLEIAYQYNDFASPLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLKCDYPGAHVGPEPTTDRFVIVMS GPDERSVPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQMPHPLLDEVTIVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKC DLILLLFDPHKLDISDEFKRVIASLHGNDDKIRVVLNKADQVNTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPM DGGCSLGRDLFEKEQNDLLADLVDIPKKAVDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKAKAQQKLIDNLDVEFA KVQREYHLPAGDFPNVEHFKEVLSRYSIDKFEKLKPKMIQAVDDMLGYEIPELLRKFRNPYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 8 | 103 | 96 | 4.5E-13 | ||
| Gene3D | 8 | 108 | 101 | 1.0E-25 | – | |
| SUPERFAMILY | 12 | 86 | 75 | 7.54E-22 | ||
| Pfam | 13 | 80 | 68 | 6.8E-8 | ||
| ProSiteProfiles | 14 | 38 | 25 | 7.065 | ||
| ProSiteProfiles | 15 | 84 | 70 | 13.032 | ||
| SMART | 18 | 46 | 29 | 2.2 | ||
| CDD | 19 | 85 | 67 | 2.04365E-24 | ||
| ProSiteProfiles | 48 | 83 | 36 | 10.859 | ||
| SMART | 52 | 80 | 29 | 0.21 | ||
| PANTHER | 106 | 540 | 435 | 1.4E-283 | – | |
| PANTHER | 106 | 540 | 435 | 1.4E-283 | – | |
| Pfam | 162 | 194 | 33 | 3.2E-14 | ||
| Gene3D | 162 | 525 | 364 | 1.3E-153 | – | |
| SUPERFAMILY | 188 | 464 | 277 | 6.35E-31 | ||
| ProSiteProfiles | 193 | 426 | 234 | 30.387 | ||
| CDD | 198 | 440 | 243 | 5.34776E-143 | – | |
| Pfam | 199 | 358 | 160 | 5.0E-11 | ||
| Gene3D | 199 | 425 | 227 | 1.3E-153 | – | |
| Pfam | 432 | 534 | 103 | 3.0E-37 | ||
| Coils | 465 | 485 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi6g1v0288500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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