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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011009
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 3629 results. Now displaying 2 of 73 with 50 rows per page. This search has taken 5.706s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0066389.1
n.a. PREDICTED: serine/threonine-protein kinase Nek5-like [Glycine max] gi|356550080|ref|XP_003543418.1| chr0 23347244 23350255 -
2 domain predictions
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Lj0g3v0066389.2
n.a. PREDICTED: serine/threonine-protein kinase Nek5-like [Glycine max] gi|356550080|ref|XP_003543418.1| chr0 23347244 23353172 -
2 domain predictions
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Lj0g3v0067549.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1-like [Glycine max] gi|356516754|ref|XP_003527058.1| chr0 23998624 24003883 -
2 domain predictions
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Lj0g3v0067549.2
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1-like [Glycine max] gi|356516754|ref|XP_003527058.1| chr0 23998624 24003883 -
2 domain predictions
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Lj0g3v0067559.1
n.a. serine-threonine kinase [Phaseolus vulgaris] gi|38194928|gb|AAR13316.1| chr0 24006458 24007050 +
2 domain predictions
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Lj0g3v0067799.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Glycine max] gi|356575773|ref|XP_003556011.1| chr0 24129425 24131578 -
2 domain predictions
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Lj0g3v0067799.2
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Glycine max] gi|356575773|ref|XP_003556011.1| chr0 24129425 24131578 -
2 domain predictions
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Lj0g3v0067829.1
n.a. PREDICTED: serine/threonine-protein kinase SAPK3-like [Cicer arietinum] gi|502152528|ref|XP_004508967.1| chr0 24148142 24151680 +
2 domain predictions
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Lj0g3v0067889.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max] gi|356521887|ref|XP_003529582.1| chr0 24185210 24190043 +
2 domain predictions
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Lj0g3v0069359.1
n.a. cold-induced wall associated kinase, partial [Ammopiptanthus mongolicus] gi|115432146|gb|ABI97350.1| chr0 25036388 25037162 +
2 domain predictions
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Lj0g3v0070159.1
n.a. PREDICTED: serine/threonine-protein kinase/endoribonuclease ire-1-like [Glycine max] gi|356561003|ref|XP_003548775.1| chr0 25515786 25516386 +
2 domain predictions
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Lj0g3v0070679.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357438781|ref|XP_003589667.1| chr0 25811146 25814698 -
2 domain predictions
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Lj0g3v0070679.2
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357438781|ref|XP_003589667.1| chr0 25811744 25814698 -
2 domain predictions
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Lj0g3v0070679.3
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357438781|ref|XP_003589667.1| chr0 25812952 25814698 -
2 domain predictions
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Lj0g3v0072519.1
n.a. PREDICTED: protein kinase APK1B, chloroplastic-like [Glycine max] gi|356506672|ref|XP_003522100.1| chr0 26909470 26914375 -
2 domain predictions
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Lj0g3v0072749.1
n.a. PREDICTED: CBL-interacting serine/threonine-protein kinase 10-like isoform X1 [Cicer arietinum] gi|502129560|ref|XP_004500345.1| chr0 27105006 27107757 +
2 domain predictions
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Lj0g3v0073209.1
n.a. MAP/microtubule affinity-regulating kinase [Medicago truncatula] gi|357515927|ref|XP_003628252.1| chr0 27410480 27412917 +
2 domain predictions
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Lj0g3v0073219.1
n.a. MAP/microtubule affinity-regulating kinase [Medicago truncatula] gi|357515927|ref|XP_003628252.1| chr0 27410480 27413667 +
2 domain predictions
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Lj0g3v0073239.1
n.a. PREDICTED: checkpoint serine/threonine-protein kinase BUB1-like [Glycine max] gi|356544986|ref|XP_003540927.1| chr0 27426913 27431697 +
2 domain predictions
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Lj0g3v0073509.1
n.a. Shaggy-related protein kinase [Medicago truncatula] gi|357452871|ref|XP_003596712.1| chr0 27591478 27594395 -
2 domain predictions
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Lj0g3v0073629.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase S.5-like [Glycine max] gi|356498420|ref|XP_003518050.1| chr0 27656698 27659079 +
2 domain predictions
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Lj0g3v0073739.1
n.a. PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Glycine max] gi|356541852|ref|XP_003539386.1| chr0 27722307 27727642 +
2 domain predictions
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Lj0g3v0073739.2
n.a. PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Glycine max] gi|356541852|ref|XP_003539386.1| chr0 27722307 27727642 +
2 domain predictions
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Lj0g3v0075369.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Cicer arietinum] gi|502135214|ref|XP_004502257.1| chr0 28565917 28573472 +
2 domain predictions
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Lj0g3v0075699.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|358346449|ref|XP_003637280.1| chr0 28803126 28805909 +
2 domain predictions
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Lj0g3v0076929.1
n.a. Serine-threonine protein kinase [Medicago truncatula] gi|357489739|ref|XP_003615157.1| chr0 29414572 29418155 -
2 domain predictions
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Lj0g3v0077409.1
n.a. PREDICTED: LOW QUALITY PROTEIN: calcium-dependent protein kinase 13-like [Glycine max] gi|356566682|ref|XP_003551559.1| chr0 29704192 29708082 -
2 domain predictions
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Lj0g3v0078449.1
n.a. PREDICTED: chaperone activity of bc1 complex-like, mitochondrial-like [Glycine max] gi|356501819|ref|XP_003519721.1| chr0 30191349 30198459 +
2 domain predictions
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Lj0g3v0078479.1
n.a. PREDICTED: receptor like protein kinase S.2-like [Glycine max] gi|356503214|ref|XP_003520406.1| chr0 30211687 30214919 -
2 domain predictions
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Lj0g3v0078639.1
n.a. Kinase superfamily protein isoform 2 [Theobroma cacao] gi|508704576|gb|EOX96472.1| chr0 30296052 30297356 -
2 domain predictions
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Lj0g3v0080109.1
n.a. Kinase superfamily protein isoform 1 [Theobroma cacao] gi|508728362|gb|EOY20259.1| chr0 31058585 31062425 -
2 domain predictions
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Lj0g3v0080109.2
n.a. Kinase superfamily protein isoform 1 [Theobroma cacao] gi|508728362|gb|EOY20259.1| chr0 31058585 31062425 -
2 domain predictions
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Lj0g3v0082369.1
n.a. PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Glycine max] gi|356514005|ref|XP_003525698.1| chr0 32335129 32339897 -
2 domain predictions
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Lj0g3v0083059.1
n.a. Ser/Thr protein kinase [Lotus japonicus] gi|62857012|dbj|BAD95891.1| chr0 32749920 32755086 -
2 domain predictions
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Lj0g3v0083519.1
n.a. PREDICTED: probable receptor-like protein kinase At5g15080-like [Cicer arietinum] gi|502155065|ref|XP_004509947.1| chr0 33105730 33108989 +
2 domain predictions
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Lj0g3v0083779.1
n.a. ABC transporter-like protein [Medicago truncatula] gi|357519623|ref|XP_003630100.1| chr0 33297206 33308683 +
2 domain predictions
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Lj0g3v0083779.2
n.a. ABC transporter-like protein [Medicago truncatula] gi|357519623|ref|XP_003630100.1| chr0 33297206 33305330 +
2 domain predictions
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Lj0g3v0084029.1
n.a. PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 2-like [Cicer arietinum] gi|502136069|ref|XP_004502549.1| chr0 33421371 33426989 +
2 domain predictions
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Lj0g3v0084889.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK12-like [Glycine max] gi|356524047|ref|XP_003530644.1| chr0 33875098 33875616 +
2 domain predictions
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Lj0g3v0086719.1
n.a. PREDICTED: somatic embryogenesis receptor kinase 4-like [Glycine max] gi|356559929|ref|XP_003548248.1| chr0 35046088 35050220 -
2 domain predictions
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Lj0g3v0088019.1
n.a. Lectin receptor-like kinase Tg-20 [Medicago truncatula] gi|357517167|ref|XP_003628872.1| chr0 35898490 35900862 -
2 domain predictions
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Lj0g3v0089219.1
n.a. PREDICTED: serine/threonine-protein kinase WNK8-like isoform X2 [Cicer arietinum] gi|502134290|ref|XP_004502065.1| chr0 36593243 36596326 -
2 domain predictions
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Lj0g3v0089219.2
n.a. No lysine kinase 10 isoform 1 [Theobroma cacao] gi|508776675|gb|EOY23931.1| chr0 36594714 36596301 -
2 domain predictions
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Lj0g3v0089589.1
n.a. PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270-like [Glycine max] gi|356541803|ref|XP_003539362.1| chr0 36788440 36791306 +
2 domain predictions
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Lj0g3v0090399.1
n.a. Protein kinase-like protein [Medicago truncatula] gi|357491539|ref|XP_003616057.1| chr0 37230407 37231665 +
2 domain predictions
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Lj0g3v0090469.1
n.a. PREDICTED: phototropin-2-like [Glycine max] gi|356559155|ref|XP_003547866.1| chr0 37281700 37291342 -
2 domain predictions
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Lj0g3v0090469.2
n.a. PREDICTED: phototropin-2-like [Glycine max] gi|356559155|ref|XP_003547866.1| chr0 37281700 37292644 -
2 domain predictions
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Lj0g3v0090879.1
n.a. PREDICTED: receptor-like protein kinase ANXUR2-like [Glycine max] gi|356526520|ref|XP_003531865.1| chr0 37571261 37573702 +
2 domain predictions
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Lj0g3v0092529.1
n.a. PREDICTED: probable serine/threonine-protein kinase At1g01540-like [Glycine max] gi|356568429|ref|XP_003552413.1| chr0 38580316 38581785 +
2 domain predictions
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Lj0g3v0092609.1
n.a. PREDICTED: cyclin-dependent kinase F-4-like [Glycine max] gi|356496445|ref|XP_003517078.1| chr0 38620295 38626809 -
2 domain predictions
 –