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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032675
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 2134 results. Now displaying 8 of 43 with 50 rows per page. This search has taken 6.083s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0339459.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495069|ref|XP_003516403.1| chr0 177867141 177868508 +
2 domain predictions
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Lj0g3v0339469.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495069|ref|XP_003516403.1| chr0 177869471 177870154 +
3 domain predictions
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Lj0g3v0340419.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357452697|ref|XP_003596625.1| chr0 178352389 178354306 -
2 domain predictions
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Lj0g3v0340429.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357452701|ref|XP_003596627.1| chr0 178363910 178364854 -
2 domain predictions
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Lj0g3v0340619.1
n.a. PREDICTED: TMV resistance protein N-like, partial [Cicer arietinum] gi|502171577|ref|XP_004515064.1| chr0 178429655 178436829 +
3 domain predictions
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Lj0g3v0341759.1
n.a. NBS-containing resistance-like protein [Medicago truncatula] gi|357468483|ref|XP_003604526.1| chr0 179153498 179157084 +
3 domain predictions
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Lj0g3v0342799.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max] gi|356518897|ref|XP_003528113.1| chr0 179721799 179728136 -
3 domain predictions
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Lj0g3v0343819.1
n.a. PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2-like [Glycine max] gi|356536856|ref|XP_003536949.1| chr0 180296303 180299178 +
3 domain predictions
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Lj0g3v0343909.1
n.a. TIR; AAA ATPase [Medicago truncatula] gi|124361211|gb|ABN09183.1| chr0 180345585 180350929 +
3 domain predictions
 –
Lj0g3v0343909.3
n.a. TMV resistance protein N [Medicago truncatula] gi|357505213|ref|XP_003622895.1| chr0 180345585 180351080 +
3 domain predictions
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Lj0g3v0344099.1
n.a. NB-LRR type disease resistance protein Rps1-k-2 [Medicago truncatula] gi|357457003|ref|XP_003598782.1| chr0 180446098 180446618 -
3 domain predictions
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Lj0g3v0346099.1
n.a. PREDICTED: probable inactive receptor kinase At2g26730-like [Fragaria vesca subsp]. vesca] gi|470101852|ref|XP_004287382.1| chr0 181531041 181534267 +
3 domain predictions
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Lj0g3v0347039.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 182070481 182080031 +
2 domain predictions
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Lj0g3v0347229.1
n.a. PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like [Cicer arietinum] gi|502129431|ref|XP_004500301.1| chr0 182175842 182182617 +
3 domain predictions
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Lj0g3v0348589.1
n.a. PREDICTED: leucine-rich repeat protein lrrA-like [Glycine max] gi|356563459|ref|XP_003549980.1| chr0 182962539 182962784 +
2 domain predictions
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Lj0g3v0349469.1
n.a. TMV resistance protein N [Medicago truncatula] gi|357509247|ref|XP_003624912.1| chr0 183504089 183504463 -
3 domain predictions
 –
Lj0g3v0349479.1
n.a. TMV resistance protein N [Medicago truncatula] gi|357505213|ref|XP_003622895.1| chr0 183504171 183508421 -
3 domain predictions
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Lj0g3v0350879.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510183|ref|XP_003625380.1| chr0 184435717 184437296 +
2 domain predictions
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Lj0g3v0351279.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like isoform X1 [Cicer arietinum] gi|502155784|ref|XP_004510191.1| chr0 184699959 184703503 +
3 domain predictions
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Lj0g3v0351429.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 184783355 184786258 +
2 domain predictions
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Lj0g3v0351429.2
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357458673|ref|XP_003599617.1| chr0 184783355 184786258 +
2 domain predictions
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Lj0g3v0351789.1
n.a. PREDICTED: disease resistance protein RPM1-like [Cicer arietinum] gi|502127634|ref|XP_004499780.1| chr0 184972395 184975893 -
3 domain predictions
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Lj0g3v0351799.1
n.a. NBS resistance protein [Medicago truncatula] gi|357456269|ref|XP_003598415.1| chr0 184977009 184987464 -
3 domain predictions
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Lj0g3v0353029.1
n.a. NB-LRR type disease resistance protein Rps1-k-2 [Medicago truncatula] gi|357457003|ref|XP_003598782.1| chr0 185721215 185731073 -
3 domain predictions
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Lj0g3v0353789.1
n.a. Tir-nbs-lrr resistance protein [Medicago truncatula] gi|357468511|ref|XP_003604540.1| chr0 186236266 186241590 -
3 domain predictions
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Lj0g3v0353849.1
n.a. PREDICTED: F-box protein At1g60400-like [Glycine max] gi|356529231|ref|XP_003533199.1| chr0 186295743 186297915 +
2 domain predictions
 –
Lj0g3v0354059.1
n.a. NB-LRR type disease resistance protein Rps1-k-2 [Medicago truncatula] gi|357457003|ref|XP_003598782.1| chr0 186451081 186458452 +
3 domain predictions
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Lj0g3v0354059.3
n.a. NB-LRR type disease resistance protein Rps1-k-2 [Medicago truncatula] gi|357457003|ref|XP_003598782.1| chr0 186451968 186458452 +
3 domain predictions
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Lj0g3v0354289.1
n.a. NBS resistance protein-like protein [Medicago truncatula] gi|357469163|ref|XP_003604866.1| chr0 186588734 186602646 +
3 domain predictions
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Lj0g3v0356809.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2-like [Glycine max] gi|356495063|ref|XP_003516400.1| chr0 187910217 187913635 -
3 domain predictions
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Lj0g3v0357839.1
n.a. NBS-LRR resistance protein [Medicago truncatula] gi|357490823|ref|XP_003615699.1| chr0 188364795 188368046 -
3 domain predictions
 –
Lj0g3v0357849.1
n.a. NBS-LRR resistance protein [Medicago truncatula] gi|357490825|ref|XP_003615700.1| chr0 188364795 188368315 -
3 domain predictions
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Lj0g3v0359279.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356561446|ref|XP_003548992.1| chr0 189146158 189148127 -
3 domain predictions
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Lj0g3v0359679.1
n.a. PREDICTED: serine/threonine-protein kinase BRI1-like 1-like [Cicer arietinum] gi|502127369|ref|XP_004499678.1| chr0 189379633 189384247 +
3 domain predictions
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Lj0g3v0360099.1
n.a. PREDICTED: disease resistance protein RPM1-like isoform X1 [Cicer arietinum] gi|502125327|ref|XP_004498891.1| chr0 189643284 189648854 +
3 domain predictions
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Lj0g3v0360099.2
n.a. PREDICTED: disease resistance protein RPM1-like isoform X1 [Cicer arietinum] gi|502125327|ref|XP_004498891.1| chr0 189650259 189654644 +
3 domain predictions
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Lj0g3v0361919.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940-like isoform X1 [Cicer arietinum] gi|502080122|ref|XP_004486464.1| chr0 190714722 190719641 +
2 domain predictions
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Lj0g3v0361919.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940-like isoform X1 [Cicer arietinum] gi|502080122|ref|XP_004486464.1| chr0 190714835 190719641 +
3 domain predictions
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Lj0g3v0362909.1
n.a. n.a. chr0 191393371 191405275 -
3 domain predictions
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Lj0g3v0362909.4
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356542401|ref|XP_003539655.1| chr0 191409964 191414853 -
3 domain predictions
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Lj1g3v0013170.1
n.a. PREDICTED: EIN3-binding F-box protein 1-like isoform 2 [Glycine max] gi|356552521|ref|XP_003544615.1| chr1 80320 80738 -
2 domain predictions
 –
Lj1g3v0013210.1
n.a. Ein3-binding f-box protein [Medicago truncatula] gi|357436981|ref|XP_003588766.1| chr1 82587 83274 -
2 domain predictions
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Lj1g3v0050980.1
n.a. PREDICTED: somatic embryogenesis receptor kinase 2-like [Cicer arietinum] gi|502158862|ref|XP_004511305.1| chr1 290354 292244 +
3 domain predictions
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Lj1g3v0112650.1
n.a. PREDICTED: leucine-rich repeat extensin-like protein 6-like [Glycine max] gi|356575879|ref|XP_003556064.1| chr1 1053367 1054302 -
3 domain predictions
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Lj1g3v0112960.1
n.a. Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao] gi|508713910|gb|EOY05807.1| chr1 1212000 1218600 +
2 domain predictions
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Lj1g3v0173650.1
n.a. F-box protein [Medicago truncatula] gi|357485797|ref|XP_003613186.1| chr1 1936553 1941552 +
2 domain predictions
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Lj1g3v0244620.1
n.a. PREDICTED: transport inhibitor response 1-like protein-like [Cicer arietinum] gi|502095246|ref|XP_004490408.1| chr1 2407473 2411040 +
2 domain predictions
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Lj1g3v0244630.2
n.a. F-box family protein [Medicago truncatula] gi|357489889|ref|XP_003615232.1| chr1 2408912 2410072 +
2 domain predictions
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Lj1g3v0318040.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr1 3607720 3608515 -
2 domain predictions
 –
Lj1g3v0318050.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr1 3607720 3609680 -
2 domain predictions
 –