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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032675
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 2134 results. Now displaying 12 of 43 with 50 rows per page. This search has taken 6.294s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v0571630.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr2 7793701 7795156 +
2 domain predictions
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Lj2g3v0571700.1
n.a. cyclin-like F-box [Phaseolus vulgaris] gi|270342099|gb|ACZ74682.1| chr2 7817025 7818424 +
2 domain predictions
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Lj2g3v0571750.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr2 7833939 7834454 +
2 domain predictions
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Lj2g3v0571760.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr2 7840479 7842297 +
2 domain predictions
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Lj2g3v0582820.1
n.a. PREDICTED: TMV resistance protein N-like [Cicer arietinum] gi|502171572|ref|XP_004515062.1| chr2 7960615 7969284 +
3 domain predictions
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Lj2g3v0604110.1
n.a. PREDICTED: TMV resistance protein N-like [Vitis vinifera] gi|359496026|ref|XP_002277166.2| chr2 8030188 8032576 +
3 domain predictions
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Lj2g3v0604110.2
n.a. PREDICTED: LOW QUALITY PROTEIN: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Cucumis sativus] gi|449443196|ref|XP_004139366.1| chr2 8030188 8032576 +
3 domain predictions
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Lj2g3v0620850.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr2 8351378 8354973 -
3 domain predictions
 –
Lj2g3v0620850.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr2 8351378 8354973 -
3 domain predictions
 –
Lj2g3v0620850.3
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr2 8351378 8354973 -
3 domain predictions
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Lj2g3v0620870.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356570335|ref|XP_003553345.1| chr2 8357665 8365409 -
3 domain predictions
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Lj2g3v0635030.2
n.a. Disease resistance-like protein [Medicago truncatula] gi|357486563|ref|XP_003613569.1| chr2 9513631 9517652 +
3 domain predictions
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Lj2g3v0635160.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr2 9555150 9555996 +
3 domain predictions
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Lj2g3v0636320.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495069|ref|XP_003516403.1| chr2 10104093 10107525 -
3 domain predictions
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Lj2g3v0636420.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495069|ref|XP_003516403.1| chr2 10122703 10126263 -
3 domain predictions
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Lj2g3v0636460.1
n.a. PREDICTED: receptor-like protein 12-like [Cicer arietinum] gi|502177353|ref|XP_004516064.1| chr2 10132552 10133187 -
3 domain predictions
 –
Lj2g3v0636470.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495019|ref|XP_003516378.1| chr2 10133518 10135060 -
3 domain predictions
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Lj2g3v0636560.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495013|ref|XP_003516375.1| chr2 10156645 10157423 -
2 domain predictions
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Lj2g3v0636810.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g59680-like isoform X1 [Cicer arietinum] gi|502164954|ref|XP_004513345.1| chr2 10336474 10340345 -
3 domain predictions
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Lj2g3v0661330.1
n.a. leucine-rich repeat family protein [Arabidopsis lyrata subsp]. lyrata] gi|297847122|ref|XP_002891442.1| chr2 10630698 10642667 -
3 domain predictions
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Lj2g3v0743220.1
n.a. leucine-rich repeat receptor-like protein [Lotus japonicus] gi|336088213|dbj|BAK39955.1| chr2 11781923 11784097 +
3 domain predictions
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Lj2g3v0852080.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Glycine max] gi|356495853|ref|XP_003516786.1| chr2 13095422 13099091 -
3 domain predictions
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Lj2g3v0852090.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Glycine max] gi|356497583|ref|XP_003517639.1| chr2 13100029 13103881 -
3 domain predictions
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Lj2g3v0854120.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Cicer arietinum] gi|502164103|ref|XP_004513049.1| chr2 13113584 13117710 -
3 domain predictions
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Lj2g3v0892280.1
n.a. PREDICTED: leucine-rich repeat extensin-like protein 6-like [Cicer arietinum] gi|502164171|ref|XP_004513070.1| chr2 13636707 13638527 -
3 domain predictions
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Lj2g3v0914400.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RLK-like [Glycine max] gi|356511425|ref|XP_003524427.1| chr2 14206377 14209827 -
3 domain predictions
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Lj2g3v0932650.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356561446|ref|XP_003548992.1| chr2 14734798 14736419 -
3 domain predictions
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Lj2g3v1022570.1
n.a. PREDICTED: probable inactive receptor kinase At1g27190-like [Cicer arietinum] gi|502090841|ref|XP_004489358.1| chr2 16167823 16170408 +
3 domain predictions
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Lj2g3v1034750.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357457471|ref|XP_003599016.1| chr2 16603699 16616375 +
3 domain predictions
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Lj2g3v1080750.1
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr2 17655125 17655923 +
2 domain predictions
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Lj2g3v1080760.1
n.a. F-box protein SKIP19 [Medicago truncatula] gi|357460899|ref|XP_003600731.1| chr2 17658693 17660319 +
2 domain predictions
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Lj2g3v1182670.1
n.a. PREDICTED: piriformospora indica-insensitive protein 2-like [Glycine max] gi|356496010|ref|XP_003516863.1| chr2 18692299 18694115 -
3 domain predictions
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Lj2g3v1196640.1
n.a. PREDICTED: protein NSP-INTERACTING KINASE 1-like [Glycine max] gi|356498122|ref|XP_003517902.1| chr2 19044050 19047890 +
3 domain predictions
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Lj2g3v1196660.1
n.a. F-box/FBD/LRR-repeat protein, partial [Medicago truncatula] gi|358347715|ref|XP_003637900.1| chr2 19049360 19050628 -
2 domain predictions
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Lj2g3v1196730.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Glycine max] gi|356499986|ref|XP_003518816.1| chr2 19068264 19070209 -
2 domain predictions
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Lj2g3v1241150.1
n.a. PREDICTED: receptor-like protein kinase 2-like [Glycine max] gi|356502639|ref|XP_003520125.1| chr2 19650481 19655160 -
2 domain predictions
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Lj2g3v1266090.1
n.a. Leucine-rich repeat receptor protein kinase EXS [Medicago truncatula] gi|357487463|ref|XP_003614019.1| chr2 20118911 20123287 +
3 domain predictions
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Lj2g3v1266090.2
n.a. Leucine-rich repeat receptor protein kinase EXS [Medicago truncatula] gi|357487463|ref|XP_003614019.1| chr2 20118911 20124267 +
3 domain predictions
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Lj2g3v1337660.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390-like [Glycine max] gi|356497862|ref|XP_003517775.1| chr2 20993244 20999161 +
3 domain predictions
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Lj2g3v1337660.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390-like [Glycine max] gi|356497862|ref|XP_003517775.1| chr2 20993244 20996207 +
3 domain predictions
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Lj2g3v1337660.3
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390-like [Glycine max] gi|356497862|ref|XP_003517775.1| chr2 20993244 20999336 +
3 domain predictions
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Lj2g3v1350520.1
n.a. probable leucine-rich repeat receptor-like protein kinase At1g35710-like precursor [Glycine max] gi|359807163|ref|NP_001241099.1| chr2 21293084 21296216 +
3 domain predictions
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Lj2g3v1353630.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356497814|ref|XP_003517752.1| chr2 21342783 21349807 -
3 domain predictions
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Lj2g3v1371320.1
n.a. Nucleotide-binding oligomerization domain-containing protein [Medicago truncatula] gi|357486129|ref|XP_003613352.1| chr2 21583337 21587858 +
2 domain predictions
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Lj2g3v1437110.1
n.a. PREDICTED: leucine-rich repeat-containing protein 7-like [Glycine max] gi|356497728|ref|XP_003517711.1| chr2 22640062 22642733 -
3 domain predictions
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Lj2g3v1521940.1
n.a. n.a. chr2 24028201 24033502 +
3 domain predictions
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Lj2g3v1521950.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Cicer arietinum] gi|502174710|ref|XP_004515583.1| chr2 24028468 24030815 -
2 domain predictions
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Lj2g3v1532990.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357452701|ref|XP_003596627.1| chr2 24042585 24043541 -
3 domain predictions
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Lj2g3v1533000.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357452697|ref|XP_003596625.1| chr2 24045529 24047229 -
2 domain predictions
 –
Lj2g3v1534060.1
n.a. n.a. chr2 24065009 24074097 +
3 domain predictions
 –