Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000169
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 62 results. Now displaying 2 of 2 with 50 rows per page. This search has taken 5.180s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi4g1v0324600.1
n.a. Cysteine protease; TAIR: AT3G45310.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8RWQ9|ALEUL_ARATH Thiol protease aleurain-like; TrEMBL-Plants: tr|I3SZ47|I3SZ47_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0324600 LjG1.1_chr4 70297558 70301017 +
2 domain predictions
 –
LotjaGi4g1v0386800.1
n.a. Calpain, putative; TAIR: AT1G55350.1 calpain-type cysteine protease family; Swiss-Prot: sp|Q8RVL2|DEK1_ARATH Calpain-type cysteine protease DEK1; TrEMBL-Plants: tr|V7CN28|V7CN28_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0386800 LjG1.1_chr4 76527587 76557375 +
2 domain predictions
 –
LotjaGi4g1v0386800.2
n.a. Calpain, putative; TAIR: AT1G55350.1 calpain-type cysteine protease family; Swiss-Prot: sp|Q8RVL2|DEK1_ARATH Calpain-type cysteine protease DEK1; TrEMBL-Plants: tr|V7CN28|V7CN28_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0386800 LjG1.1_chr4 76528002 76556202 +
2 domain predictions
 –
LotjaGi4g1v0386800.3
n.a. Calpain, putative; TAIR: AT1G55350.1 calpain-type cysteine protease family; Swiss-Prot: sp|Q8RVL2|DEK1_ARATH Calpain-type cysteine protease DEK1; TrEMBL-Plants: tr|V7CN28|V7CN28_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0386800 LjG1.1_chr4 76530091 76556202 +
2 domain predictions
 –
LotjaGi5g1v0010700.2
n.a. Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P25804|CYSP_PEA Cysteine proteinase 15A; TrEMBL-Plants: tr|I1MC68|I1MC68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0010700 LjG1.1_chr5 2520218 2523722 -
2 domain predictions
 –
LotjaGi5g1v0030300.1
n.a. Cysteine proteinase; TAIR: AT1G47128.1 Granulin repeat cysteine protease family protein; Swiss-Prot: sp|P43297|RD21A_ARATH Cysteine proteinase RD21A; TrEMBL-Plants: tr|A0A1J7IKX0|A0A1J7IKX0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0030300 LjG1.1_chr5 4905234 4911357 +
2 domain predictions
 –
LotjaGi5g1v0269900.1
n.a. Cysteine proteinase; TAIR: AT3G54940.2 Papain family cysteine protease; Swiss-Prot: sp|Q8VYS0|RD19D_ARATH Probable cysteine protease RD19D; TrEMBL-Plants: tr|A0A072VPA6|A0A072VPA6_MEDTR Papain family cysteine protease; Found in the gene: LotjaGi5g1v0269900 LjG1.1_chr5 58317188 58320331 +
2 domain predictions
 –
LotjaGi5g1v0329500.1
n.a. Cysteine protease, putative; TAIR: AT5G43060.1 Granulin repeat cysteine protease family protein; Swiss-Prot: sp|Q9FMH8|RD21B_ARATH Probable cysteine protease RD21B; TrEMBL-Plants: tr|A0A1J7HJC8|A0A1J7HJC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0329500 LjG1.1_chr5 64662993 64665931 -
2 domain predictions
 –
LotjaGi6g1v0322400.1
n.a. Cysteine protease; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25776|ORYA_ORYSJ Oryzain alpha chain; TrEMBL-Plants: tr|A0A151S6D2|A0A151S6D2_CAJCA Cysteine proteinase RD21a; Found in the gene: LotjaGi6g1v0322400 LjG1.1_chr6 63846364 63849259 -
2 domain predictions
 –
LotjaGi6g1v0323700.1
n.a. Cysteine protease; TAIR: AT1G20850.1 xylem cysteine peptidase 2; Swiss-Prot: sp|P22895|P34_SOYBN P34 probable thiol protease; TrEMBL-Plants: tr|G7ILJ3|G7ILJ3_MEDTR Papain family cysteine protease; Found in the gene: LotjaGi6g1v0323700 LjG1.1_chr6 63939432 63941359 -
2 domain predictions
 –
LotjaGi6g1v0324000.1
n.a. Cysteine protease; TAIR: AT3G49340.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|I3S8V9|I3S8V9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0324000 LjG1.1_chr6 63963221 63965455 -
2 domain predictions
 –
LotjaGi6g1v0324100.1
n.a. Cysteine protease; TAIR: AT2G34080.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|I3S8V9|I3S8V9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0324100 LjG1.1_chr6 63966317 63968411 -
2 domain predictions
 –