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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000595
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We have found 119 results. Now displaying 3 of 3 with 50 rows per page. This search has taken 7.884s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi5g1v0016000.1
n.a. Receptor protein kinase-like protein; TAIR: AT2G16250.1 Leucine-rich repeat protein kinase family protein; Swiss-Prot: sp|C0LGK4|Y2165_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g16250; TrEMBL-Plants: tr|A0A072VFB5|A0A072VFB5_MEDTR LRR receptor-like kinase family protein; Found in the gene: LotjaGi5g1v0016000 LjG1.1_chr5 3153069 3158275 +
2 domain predictions
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LotjaGi5g1v0061400.1
n.a. Potassium channel; TAIR: AT2G26650.1 K+ transporter 1; Swiss-Prot: sp|Q38998|AKT1_ARATH Potassium channel AKT1; TrEMBL-Plants: tr|I1M9L1|I1M9L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0061400 LjG1.1_chr5 10269430 10276923 +
5 domain predictions
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LotjaGi5g1v0079200.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|G7IBJ4|CN15A_MEDTR Protein CNGC15a; TrEMBL-Plants: tr|K7LHL8|K7LHL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0079200 LjG1.1_chr5 12901033 12907731 -
4 domain predictions
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LotjaGi5g1v0079200.2
n.a. Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|G7IBJ4|CN15A_MEDTR Protein CNGC15a; TrEMBL-Plants: tr|K7LHL8|K7LHL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0079200 LjG1.1_chr5 12901467 12906448 -
4 domain predictions
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LotjaGi5g1v0118700.1
n.a. Potassium channel; TAIR: AT5G46240.1 potassium channel protein (KAT1); Swiss-Prot: sp|Q39128|KAT1_ARATH Potassium channel KAT1; TrEMBL-Plants: tr|I1KW21|I1KW21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0118700 LjG1.1_chr5 24844206 24852496 +
5 domain predictions
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LotjaGi6g1v0142200_LC.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl transferase, Ribonuclease H fold; TAIR: AT3G09510.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151U748|A0A151U748_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi6g1v0142200_LC LjG1.1_chr6 41007635 41012475 -
2 domain predictions
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LotjaGi6g1v0198300.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|A0A0S3RGT1|A0A0S3RGT1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198300 LjG1.1_chr6 49485578 49498673 +
5 domain predictions
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LotjaGi6g1v0198300.2
n.a. Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|A0A0R0K8S8|A0A0R0K8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198300 LjG1.1_chr6 49486290 49494443 +
5 domain predictions
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LotjaGi6g1v0198300.3
n.a. Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|I1KDG8|I1KDG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198300 LjG1.1_chr6 49486290 49494443 +
5 domain predictions
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LotjaGi6g1v0198300.4
n.a. Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|A0A151R9M7|A0A151R9M7_CAJCA Putative cyclic nucleotide-gated ion channel 17; Found in the gene: LotjaGi6g1v0198300 LjG1.1_chr6 49486290 49494443 +
5 domain predictions
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LotjaGi6g1v0198300.5
n.a. Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|I1JWE5|I1JWE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198300 LjG1.1_chr6 49486290 49494443 +
5 domain predictions
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LotjaGi6g1v0198300.6
n.a. Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|I1JWE5|I1JWE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198300 LjG1.1_chr6 49487473 49494443 +
5 domain predictions
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LotjaGi6g1v0202900.1
n.a. Cyclic nucleotide-gated ion channel-like protein; TAIR: AT5G57940.1 cyclic nucleotide gated channel 5; Swiss-Prot: sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5; TrEMBL-Plants: tr|A0A151T053|A0A151T053_CAJCA Putative cyclic nucleotide-gated ion channel 5; Found in the gene: LotjaGi6g1v0202900 LjG1.1_chr6 50034833 50040874 +
5 domain predictions
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LotjaGi6g1v0202900.2
n.a. Cyclic nucleotide-gated ion channel-like protein; TAIR: AT5G57940.1 cyclic nucleotide gated channel 5; Swiss-Prot: sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5; TrEMBL-Plants: tr|A0A151T053|A0A151T053_CAJCA Putative cyclic nucleotide-gated ion channel 5; Found in the gene: LotjaGi6g1v0202900 LjG1.1_chr6 50037067 50040551 +
5 domain predictions
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LotjaGi6g1v0308700.1
n.a. Potassium channel; TAIR: AT5G46240.1 potassium channel protein (KAT1); Swiss-Prot: sp|Q39128|KAT1_ARATH Potassium channel KAT1; TrEMBL-Plants: tr|A0A0K0TQ50|A0A0K0TQ50_9FABA KAT1-type channel; Found in the gene: LotjaGi6g1v0308700 LjG1.1_chr6 62609872 62618789 +
5 domain predictions
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LotjaGi6g1v0361000.1
n.a. Potassium channel; TAIR: AT4G22200.1 potassium transport 2/3; Swiss-Prot: sp|Q38898|AKT2_ARATH Potassium channel AKT2/3; TrEMBL-Plants: tr|A0A151T7Z2|A0A151T7Z2_CAJCA Potassium channel AKT2/3; Found in the gene: LotjaGi6g1v0361000 LjG1.1_chr6 67295568 67303321 +
5 domain predictions
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LotjaGi6g1v0361000.2
n.a. Potassium channel; TAIR: AT4G22200.1 potassium transport 2/3; Swiss-Prot: sp|Q38898|AKT2_ARATH Potassium channel AKT2/3; TrEMBL-Plants: tr|G7IPF9|G7IPF9_MEDTR Potassium outward rectifying channel protein; Found in the gene: LotjaGi6g1v0361000 LjG1.1_chr6 67296423 67302937 +
5 domain predictions
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LotjaGi6g1v0361000.3
n.a. Potassium channel; TAIR: AT4G22200.1 potassium transport 2/3; Swiss-Prot: sp|Q38898|AKT2_ARATH Potassium channel AKT2/3; TrEMBL-Plants: tr|G7IPF9|G7IPF9_MEDTR Potassium outward rectifying channel protein; Found in the gene: LotjaGi6g1v0361000 LjG1.1_chr6 67298487 67302929 +
5 domain predictions
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LotjaGi6g1v0361300.1
n.a. Potassium channel; TAIR: AT4G22200.1 potassium transport 2/3; Swiss-Prot: sp|Q38898|AKT2_ARATH Potassium channel AKT2/3; TrEMBL-Plants: tr|G7IPF9|G7IPF9_MEDTR Potassium outward rectifying channel protein; Found in the gene: LotjaGi6g1v0361300 LjG1.1_chr6 67328654 67335839 +
5 domain predictions
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