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LotjaGi5g1v0079200.1

Overview

Field Value
Gene ID LotjaGi5g1v0079200
Transcript ID LotjaGi5g1v0079200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|G7IBJ4|CN15A_MEDTR Protein CNGC15a; TrEMBL-Plants: tr|K7LHL8|K7LHL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0079200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:12901033..12907731) extracted from Lotus japonicus Gifu genome v1.2.

CTTGATTACCACAAACATGAGACTCAGGAAGTTCAAATTAAAATCCAGGGTAGAAGTCAAATAATGAATTCAAGGTAGTA CTTTGAAGGAACATAGTAGTCTAGAAGATTTTCTGGTCTCTCTTTCTTCTCTGAATTATACCTTTACATCTATTCTTTTC TCTATTTTTTCCTAGGACTTTATTGTGCTATTTTTCACTGATACATTTCTCATGAATACTAAGACGGAAGAAGTAGATAA AAGGAAGTTTTTGGTGGCACTACATTGACCTCATGAATGTTTTATTGCATGACCATGAAGTCCAAGAAGCTGACGACTTT GAATTTTTCAAATGCTTTTTGCTGTGTCCAATTCACAGGTTTCACTTGCACTTTCAATGAATGAACACAAAAAGATTAAT GTATTTATAGATTATGAACACAGTAAGTTGTCCTACTTTTGATCTGTCACATGATTTCTGGGAAAAATGGTACGCAAACT TTGCTGCAATATTTTGTGGTTGGGATTTTAAATAAAACCGCTTCCTAGCTGCTAGTTTTTATACTGGTATATATGTTCTC TCATAATCCCTTGCAGGGTGAAACTAAAATGTTGAATAGAGAACAATGGCTTCTGATATGTCAAGATCTGTAAGGTTTGT CTATGCTTCCCTTTGCACTGCAATCTTGAAGCTAATTAGAATCTAATGTAGTTTCAAAACCCATAAGCTAGTCAGAGAAA TTTCTCTGACAATTGATTCTGCCTTTGTAGAAGTGTTACCAAACATGCATGTGCGTGTTTGAGTTTCTGTTGAACACAAT GCTATAAAATCCTTTCATTTGTGTTTTGGGATATGTGAAATTAAGTTTGCGTGGGTGCAATCAGAAACTCAAACACAAAC GTGCATGTTTTGAAAACACTTCTACAACTGATTATAGGGAGAAACTTATGTGAATAGTTTATGGGTTCAAAATTTATTCT GATCAGAGCTAATCTTATTCGAACATGGTTTCGTGTAATTATGCCAGTGGCTCTATTTGTGTGCGTTTGGGTTTCGATTG AACTCAACGCTGCAAAATCTTGCATCTACATTTGTGTATCAGGATATGTGAAATTAGGTTAGTGCATGTTTGGAAACAGT AGAACAAACACACATAGTGCATGCTTGGAAACACTTACACAATTTATTGTAAAAGCAGAATTAATTCTGGGGAGAAACTT TTGTCAATAAACGAGTTTCGAAACTGATTATGATAAAAGAGAAGTTAATCCAAACATACTTTGGTGGGATTTGACTATTT TTATTACATTTTGATTTAGTTTTGGTGCTAAAATTCAGTGTTATTTGTGTCCCCAGATTTCATGATGATCCTGAAACAGA GAACGTAAAAGAAAGCCCAGAAAGTAACTGGTCAATTCTGGCCTATGAGATGAGTGACAAAAGGAAGTTAAGGAAGGATG CAAGAGAAGTTTCCAGGGTATTTTCTGAGGATTATGATGCAGCAGAGATGTTGGTGTTTGATCCTAGAGGGCCTAGAATA AATAGATGGAACAAAATTTTCTTAGCAGCTTGTTTGGTTTCATTAGTTGTGGATCCCTTATTCTTTTACTTACCAGTGGC TAAGAAAGATAAGTGCATTGACATGTCTCTTGGACTTGAAGTGTCCCTAACCATAATCCGATCAATGGTTGATGCATTTT ACATTCTTCAGATTTATGTTAGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGCGTTTCGGGCAGAGGAGAGCTTGTT TTAGACTCTTCAAAGATTGCATCAAAGTACCTCAGCAGAGACTTCTGGATTGACCTAGTGGCTGCTCTACCACTTCCACA GGTATGTTCCTGATATCAAAAAGGAATTTATTTCTTTGATGCCAAAGTTTCTGAAAATTTTAGTGAAGAAATAATGGAGA TCTAGTTCTTTTAGAAATGATGTGAAATCCAAAGCACACACAAGAAACTTATTAAAAAAATCTAACAGCAAGAGTTATAA CCAAACAACGGTAAACGAGTTTAGGCAGGAGAAGAGAGCAAACAATGGTTTACCTTGATTCAATCCCAAAGCAAAAGCTT CAGATAATTTCCAAAACAACCTAAAGATATCAAAAACCTAGCTTCACTAAGCTCCTAAAGTGATATTTTCACCCTCAAAA AGCATCACAAGTGACCTCTATCTTAGAAGTATATAGTAAGTAACCTAGCATAGCATGTTCGGATCAACTTCTCTTTTCTC AAAATCGATGGTAAAACCCTGAAGCTATTCATGGAAGCTTCTGCCCGAAATTGATTTCAAACATGCATACTTCTTTTCAA TTTGCTCTTGAAAGTGAGCTACCACACGTTTTAAAATCTAAAAAGAATCCATGAGCAATTCTTAGCATAATTGAAATATT AGTAATTTTAAAGAACTTTAAATATGTGTATGGTTTAAAGAAACCCGACTCGAGCAAGATTGCCTCAGTAGAGGATATCT GTGATTTAAAAAAAAAAACCGTTGGCTCATGTCTCTTCATCTTGGAACTCCTAATATTATAGTGTTTAAGTAGATGCTTC TTTGCTTCAGCTAGTGCAAAACTTTCTGACTTGTTTCTCGGCTATTCTGCCTAGCAATTCAAACTTGCACTTGTTTTTAA GTTTCAAGCCTTCATGACACCTCCAATTTGAATACCATTTGCAAGCAAGCATCTTTCTAGGAGATTAAGAGTGTCCTTCT AACATAGATAATTTAAGCTTTAGAACCATCCGTTAGGATCACTTAATAATTGAAGATTATCAGGACATCTTAAATAGGCT GAATTTCATACTAGATTTCAATATTGATAACTTTTCTCAATTTATTACAACAAAACCAAGGCCAACTAAACAATTGATTT TGCAATTTTATACTTATGTAAAATCTGAGACTAAGAAGACTTCATCTTTTCTTCTTTCTTTCAAAAGAAGACTGCATCAT ATTGCTGTTATTGTTTTTATCTTCATTTTTAATACACTGGCCTCAAGCTCATTTTCTGCCAAATGGATGAAATATTGAAA TAGAAGAAGAAAGAGTTGTATAGTGCTGAAAAATATCTGATTTGGTTAAGTGATGTTATAACATATTTGGACAAATTAGG GACTAGACACAGATATATTGACAGTTTAACATTCTAATTTTTTCATCAACAAAACCAGTATGATTTCCAATTTCATTTTC TATTTTTTTTCTGGTTTACTTACAAGTTTAATTTATTCTGTCACAAGCTAACAGCTTCACAATTCTCATAAATGATAGGT ACTGATTTGGGCAGTGATTCCAAATCTAAAGGGTTCACAAATGATTGCTTCAAGGCAGATTTTTCGCCTTGTAGCCATTT TCCAGTACCTCTTGAGGTTGTATCTTCTTTATCCTCTGTCTTCTGAAATCGTCAAGGCAAATGGGGTAATGATAGAAAAA GCTTGGGCCGGGGCAGCATATAATCTGACTCTCTACATGATGGCAAGTCACGTAAGTCATTAGAAATCCTTCTATAATTG ATTCTAGAGCCACGATGATTCTGAAATTTATAAGCTATCAGAATTGATTCTGAAAAAAGAGAAGTTAATCCAAAGATGAT TTTTTTCCAGACCAGTAGCTTCCTAGTCTGGAAATATCAATATTTTATTTCCTGTTTTTACATGGTTCTTTAGTTGCTTC TGATTCAGTTCTTAACTTTCACTATATTTCAAAAAGGTTTTAGGATCCACTTGGTACCTGTTATCGATTGAACGGCAAGA TGAATGCTGGAAGAAAGCTTGTGCACTTCAGTACCCAAACTGCAAGTATCATTATCTTGAATGTCAAAGCATAGGTGACC CAGATAGAGCTGCTTGGTTCAGATCAAGCAATCTCTCAGGTCTATGTGACCAGAACAGTGATTTCTTTCAATTTGGCATT TTTGCTGATGCTCTTAATCTAGAAATTACGAGCTCAAAATTCTTCAACAAATACTGTTATTGTCTTTGGTGGGGACTGAG GAATCTAAGGTAACTATTTTTTTATGTCAAAATTGGATAATTATCAAAGAACAAAGTTATATACCATCTTTAATTTAGCC AAGTCAGGTTTATGGCAACAAACACAATCCAGAACATAATTATCACTTCAAAGACTAGTGATAGCTCAGATCATTATAAA ATTTCAACCAACAATATCTTAGTGAATTACAAATTGATGAAAGCAAAAATAGGCTTAAGCTTTCCTTTTATGGTTTACTA TAATCAAGACCTTCATGTTCTTGAAGAAAATATTGTCTCTTTGGTGTTTTGGCAACCATTTGCTCTTGATCCTTGACATA TTTTAAGTCCACACTAGAGTTTGTAATATTCTAACCAATTCTGTGCCAATTATTCAGCTCTGTTGGACAGAATCTCATAA CAAGCACACATGTTGCAGAGATCAATTTTGCTGTGATTGTTGCGATTCTTGGATTGGTGCTTTTTGCATTGCTCATAGGC AATATGCAAGTAAGTCTATCTGTTGTCACTCTTGTAATGTTCTGTAAGTGTCTGGACTTGACAACTATTTGCAAAATAAA CTCATGATCTGGTGGTATATCAATATCAGTGTTCTTTAATATCAAGATTATTTATTATTTATTGCTATCTGAGTTTGCAT TTTGACTTCCATTTATTTAGAGCTCAAAATGAAATCTCTGAAACTTATGAGATGGATTTTCTTTTCATAGAGTGGAAATT TATTGTCATACTTTGTAGTGAATTGATGATTGATCATCCACATGTTAATTATTAAGCTTATAAGAAACTCTAATTGAGAT CATAAAACTGATGCTCATATCTTGTATTTAATCCTTTTCTGATTAACAGACCTACCTACAATCCACCACTATGCGGCTAG AAGAATGGAGAATAAGAAGGACAGACACGGAAAGATGGATGCATCACAGGCAGCTCCCTGGTTACCTGAAGCAAAGTGTG CGCCGCCATGACCAATTCAGATGGGTAGCTACTCGAGGAGTAGACGAGGAAGCTATTCTCAGAGACCTTCCTGCGGATCT CAGACGCGACATAAAACGCCACCTTTGCCTTAATCTAGTCAGACAAGTAAGTGCATCTTTAGAAAATCCTTCTACAAAAG ATTCTGAGGTCAAAATTATTTATGGGCAGAAGCTACAAAAAGTTCTAAGAGCAACTTCTGATTAATAGAAGTGATTCTGT GTAAAGAGCAGCTGATCCAAACAAACTATAAATCTTTGTATTTTTCACTCTTCGAAACAGTTTTGTTTGATTTATGGTAG TTTCAAATAAGCTTCTAATACAGCACTGAAATCCTAGTCAGAAAACATAATATGTGCTTTTATCTTGCTAATGTGTTTCT TGAGACACAAGCAAGTGAAAATGAAGTTGTTAGTGCATATTGAAAATTCTTCTACAATTACAATTGATCCCAAAATCAAA ATTAATTATGGGGTTAAACTTCTTGTAATTACCTTCTAAGTACTAAAATTGATTTTGAGAAAAAATAAGCTGTTCCAAAC GTGCTAAAGGATTGACCAAAAAAAAATGCTACAGGTACCATTATTTGATGACATGGATGAGAAGATGCTAGATGCAATAT GCGAAAGGCTGAAACCTTCTTTGTGCACACCAGGCACGTGCCTAGTCCGTGAAGGTGACCCTGTCAATGAGATGCTCTTC ATCGTAAGAGGTCGCCTAGACTCTTGCACCACCAACGGCGGTAGGACCGGGTTCTTTAACAGCTCCGGACTCGGCTCCGG CGACTTCTGCGGCGAAGAGCTTCTGCCATGGGCCTTGGACCCTCGTTCAACCATTGTCCTTCCCTCCTCAACTCGAACCG TGGAAGCCATAACCGAAGTTGAAGCTTTCGCGCTCATAGCCGAGGACTTGAAGTTCGTGGCGACGCAGTTCCGGAGGCTG CACTGCAAGCAGCTGAGGCACACGTTCAGGTTCCATTCCCATCAGTGGAGGACGTGGGCTGCTTGTTTCATACAAGCTGC ATGGTTCAGGTATAAGAGAATGAAAGAAACGAGTGAGCTGAAGAGCAAGGAGAATATGATGGTGTCCTATGATTATGGGC CTGGAAGTGGTGGCAATGAACATTTCTCTGCACCCTTGCAGGGCCCATTGGGCTCAAACTTTTATGCTGCAAAGCTTGTG GCTAGCCCAAGGAGAGGTAGGAGCTTGAGATATGGTTCTGAGCTTGAGATTCTTGGGGCATTAAGGAAGCCCCTTGAGCC TGATTTCACTCATGATGAAAGTTGAAGTATGTTAAATAGTTGTCCATTTTGGAGAAGCCCCCCTATTGATTAGTGTGTAT GTTAGGTCCATAAACATTAGTGAGTTTTGACCAAAAATAAACATTAGTGAGTACTGTGTTGACCAAAACAAGGAACTATG AATGACTCTTCTTTTAGATTAGGGCCAATGATGGAAATAACATAGCTCTGAGGCAAAATTTTTAGGGATAAATGATTCAA TTACTAGCTCATTATTATCCTTCTCCATGAATGTGACACCAAGTTCTTTTGGATATACTAGGGGCATCTGTAGATAAACG GAAATGATGCCCGACATACGGTTTTATGCGGCATTCTTTCAACATACAATTTAACAGCGATTACTAATGTTTGCAGTAGC TAAAAACTGTCAGAAATGTATCATTACTCGCAGACAAATGATCACTTTAAATTGATCAA 

CDS sequence (LotjaGi5g1v0079200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTGATATGTCAAGATCTGTAAGATTTCATGATGATCCTGAAACAGAGAACGTAAAAGAAAGCCCAGAAAGTAA CTGGTCAATTCTGGCCTATGAGATGAGTGACAAAAGGAAGTTAAGGAAGGATGCAAGAGAAGTTTCCAGGGTATTTTCTG AGGATTATGATGCAGCAGAGATGTTGGTGTTTGATCCTAGAGGGCCTAGAATAAATAGATGGAACAAAATTTTCTTAGCA GCTTGTTTGGTTTCATTAGTTGTGGATCCCTTATTCTTTTACTTACCAGTGGCTAAGAAAGATAAGTGCATTGACATGTC TCTTGGACTTGAAGTGTCCCTAACCATAATCCGATCAATGGTTGATGCATTTTACATTCTTCAGATTTATGTTAGGTTTC AAACTGCTTATATTGCTCCTTCCTCTCGCGTTTCGGGCAGAGGAGAGCTTGTTTTAGACTCTTCAAAGATTGCATCAAAG TACCTCAGCAGAGACTTCTGGATTGACCTAGTGGCTGCTCTACCACTTCCACAGGTACTGATTTGGGCAGTGATTCCAAA TCTAAAGGGTTCACAAATGATTGCTTCAAGGCAGATTTTTCGCCTTGTAGCCATTTTCCAGTACCTCTTGAGGTTGTATC TTCTTTATCCTCTGTCTTCTGAAATCGTCAAGGCAAATGGGGTAATGATAGAAAAAGCTTGGGCCGGGGCAGCATATAAT CTGACTCTCTACATGATGGCAAGTCACGTTTTAGGATCCACTTGGTACCTGTTATCGATTGAACGGCAAGATGAATGCTG GAAGAAAGCTTGTGCACTTCAGTACCCAAACTGCAAGTATCATTATCTTGAATGTCAAAGCATAGGTGACCCAGATAGAG CTGCTTGGTTCAGATCAAGCAATCTCTCAGGTCTATGTGACCAGAACAGTGATTTCTTTCAATTTGGCATTTTTGCTGAT GCTCTTAATCTAGAAATTACGAGCTCAAAATTCTTCAACAAATACTGTTATTGTCTTTGGTGGGGACTGAGGAATCTAAG CTCTGTTGGACAGAATCTCATAACAAGCACACATGTTGCAGAGATCAATTTTGCTGTGATTGTTGCGATTCTTGGATTGG TGCTTTTTGCATTGCTCATAGGCAATATGCAAACCTACCTACAATCCACCACTATGCGGCTAGAAGAATGGAGAATAAGA AGGACAGACACGGAAAGATGGATGCATCACAGGCAGCTCCCTGGTTACCTGAAGCAAAGTGTGCGCCGCCATGACCAATT CAGATGGGTAGCTACTCGAGGAGTAGACGAGGAAGCTATTCTCAGAGACCTTCCTGCGGATCTCAGACGCGACATAAAAC GCCACCTTTGCCTTAATCTAGTCAGACAAGTACCATTATTTGATGACATGGATGAGAAGATGCTAGATGCAATATGCGAA AGGCTGAAACCTTCTTTGTGCACACCAGGCACGTGCCTAGTCCGTGAAGGTGACCCTGTCAATGAGATGCTCTTCATCGT AAGAGGTCGCCTAGACTCTTGCACCACCAACGGCGGTAGGACCGGGTTCTTTAACAGCTCCGGACTCGGCTCCGGCGACT TCTGCGGCGAAGAGCTTCTGCCATGGGCCTTGGACCCTCGTTCAACCATTGTCCTTCCCTCCTCAACTCGAACCGTGGAA GCCATAACCGAAGTTGAAGCTTTCGCGCTCATAGCCGAGGACTTGAAGTTCGTGGCGACGCAGTTCCGGAGGCTGCACTG CAAGCAGCTGAGGCACACGTTCAGGTTCCATTCCCATCAGTGGAGGACGTGGGCTGCTTGTTTCATACAAGCTGCATGGT TCAGGTATAAGAGAATGAAAGAAACGAGTGAGCTGAAGAGCAAGGAGAATATGATGGTGTCCTATGATTATGGGCCTGGA AGTGGTGGCAATGAACATTTCTCTGCACCCTTGCAGGGCCCATTGGGCTCAAACTTTTATGCTGCAAAGCTTGTGGCTAG CCCAAGGAGAGGTAGGAGCTTGAGATATGGTTCTGAGCTTGAGATTCTTGGGGCATTAAGGAAGCCCCTTGAGCCTGATT TCACTCATGATGAAAGTTGA 

Protein sequence (LotjaGi5g1v0079200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASDMSRSVRFHDDPETENVKESPESNWSILAYEMSDKRKLRKDAREVSRVFSEDYDAAEMLVFDPRGPRINRWNKIFLA ACLVSLVVDPLFFYLPVAKKDKCIDMSLGLEVSLTIIRSMVDAFYILQIYVRFQTAYIAPSSRVSGRGELVLDSSKIASK YLSRDFWIDLVAALPLPQVLIWAVIPNLKGSQMIASRQIFRLVAIFQYLLRLYLLYPLSSEIVKANGVMIEKAWAGAAYN LTLYMMASHVLGSTWYLLSIERQDECWKKACALQYPNCKYHYLECQSIGDPDRAAWFRSSNLSGLCDQNSDFFQFGIFAD ALNLEITSSKFFNKYCYCLWWGLRNLSSVGQNLITSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTMRLEEWRIR RTDTERWMHHRQLPGYLKQSVRRHDQFRWVATRGVDEEAILRDLPADLRRDIKRHLCLNLVRQVPLFDDMDEKMLDAICE RLKPSLCTPGTCLVREGDPVNEMLFIVRGRLDSCTTNGGRTGFFNSSGLGSGDFCGEELLPWALDPRSTIVLPSSTRTVE AITEVEAFALIAEDLKFVATQFRRLHCKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRMKETSELKSKENMMVSYDYGPG SGGNEHFSAPLQGPLGSNFYAAKLVASPRRGRSLRYGSELEILGALRKPLEPDFTHDES 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 76 76 -
MobiDBLite 1 25 25 -
PANTHER 6 695 690 0.0
PANTHER 6 695 690 0.0
MobiDBLite 7 21 15 -
SUPERFAMILY 65 388 324 1.57E-30
Pfam 74 393 320 3.5E-29
Phobius 77 95 19 -
TMHMM 77 98 22 -
Phobius 96 114 19 -
Phobius 115 133 19 -
PRINTS 129 138 10 1.3E-5
Phobius 134 165 32 -
TMHMM 166 188 23 -
Phobius 166 186 21 -
Phobius 187 197 11 -
Phobius 198 216 19 -
TMHMM 200 222 23 -
Phobius 217 236 20 -
TMHMM 237 259 23 -
Phobius 237 258 22 -
PRINTS 246 256 11 1.3E-5
Phobius 259 361 103 -
PRINTS 335 352 18 1.3E-5
PRINTS 361 372 12 1.3E-5
Phobius 362 383 22 -
TMHMM 362 384 23 -
PRINTS 379 388 10 1.3E-5
Phobius 384 699 316 -
Gene3D 393 457 65 1.2E-11
SUPERFAMILY 396 586 191 7.19E-31
PRINTS 429 436 8 1.3E-5
Gene3D 464 584 121 2.0E-38
CDD 466 585 120 1.13827E-15
ProSiteProfiles 466 551 86 13.338
SMART 466 597 132 5.7E-12

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
Molecular function Voltage-gated potassium channel activity Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
Biological process Ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Biological process Potassium ion transport The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0079200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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