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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0079200 |
| Transcript ID | LotjaGi5g1v0079200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|G7IBJ4|CN15A_MEDTR Protein CNGC15a; TrEMBL-Plants: tr|K7LHL8|K7LHL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0079200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12901467..12906448) extracted from Lotus japonicus Gifu genome v1.2.
TTACATTTTGATTTAGTTTTGGTGCTAAAATTCAGTGTTATTTGTGTCCCCAGATTTCATGATGATCCTGAAACAGAGAA CGTAAAAGAAAGCCCAGAAAGTAACTGGTCAATTCTGGCCTATGAGATGAGTGACAAAAGGAAGTTAAGGAAGGATGCAA GAGAAGTTTCCAGGGTATTTTCTGAGGATTATGATGCAGCAGAGATGTTGGTGTTTGATCCTAGAGGGCCTAGAATAAAT AGATGGAACAAAATTTTCTTAGCAGCTTGTTTGGTTTCATTAGTTGTGGATCCCTTATTCTTTTACTTACCAGTGGCTAA GAAAGATAAGTGCATTGACATGTCTCTTGGACTTGAAGTGTCCCTAACCATAATCCGATCAATGGTTGATGCATTTTACA TTCTTCAGATTTATGTTAGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGCGTTTCGGGCAGAGGAGAGCTTGTTTTA GACTCTTCAAAGATTGCATCAAAGTACCTCAGCAGAGACTTCTGGATTGACCTAGTGGCTGCTCTACCACTTCCACAGGT ATGTTCCTGATATCAAAAAGGAATTTATTTCTTTGATGCCAAAGTTTCTGAAAATTTTAGTGAAGAAATAATGGAGATCT AGTTCTTTTAGAAATGATGTGAAATCCAAAGCACACACAAGAAACTTATTAAAAAAATCTAACAGCAAGAGTTATAACCA AACAACGGTAAACGAGTTTAGGCAGGAGAAGAGAGCAAACAATGGTTTACCTTGATTCAATCCCAAAGCAAAAGCTTCAG ATAATTTCCAAAACAACCTAAAGATATCAAAAACCTAGCTTCACTAAGCTCCTAAAGTGATATTTTCACCCTCAAAAAGC ATCACAAGTGACCTCTATCTTAGAAGTATATAGTAAGTAACCTAGCATAGCATGTTCGGATCAACTTCTCTTTTCTCAAA ATCGATGGTAAAACCCTGAAGCTATTCATGGAAGCTTCTGCCCGAAATTGATTTCAAACATGCATACTTCTTTTCAATTT GCTCTTGAAAGTGAGCTACCACACGTTTTAAAATCTAAAAAGAATCCATGAGCAATTCTTAGCATAATTGAAATATTAGT AATTTTAAAGAACTTTAAATATGTGTATGGTTTAAAGAAACCCGACTCGAGCAAGATTGCCTCAGTAGAGGATATCTGTG ATTTAAAAAAAAAAACCGTTGGCTCATGTCTCTTCATCTTGGAACTCCTAATATTATAGTGTTTAAGTAGATGCTTCTTT GCTTCAGCTAGTGCAAAACTTTCTGACTTGTTTCTCGGCTATTCTGCCTAGCAATTCAAACTTGCACTTGTTTTTAAGTT TCAAGCCTTCATGACACCTCCAATTTGAATACCATTTGCAAGCAAGCATCTTTCTAGGAGATTAAGAGTGTCCTTCTAAC ATAGATAATTTAAGCTTTAGAACCATCCGTTAGGATCACTTAATAATTGAAGATTATCAGGACATCTTAAATAGGCTGAA TTTCATACTAGATTTCAATATTGATAACTTTTCTCAATTTATTACAACAAAACCAAGGCCAACTAAACAATTGATTTTGC AATTTTATACTTATGTAAAATCTGAGACTAAGAAGACTTCATCTTTTCTTCTTTCTTTCAAAAGAAGACTGCATCATATT GCTGTTATTGTTTTTATCTTCATTTTTAATACACTGGCCTCAAGCTCATTTTCTGCCAAATGGATGAAATATTGAAATAG AAGAAGAAAGAGTTGTATAGTGCTGAAAAATATCTGATTTGGTTAAGTGATGTTATAACATATTTGGACAAATTAGGGAC TAGACACAGATATATTGACAGTTTAACATTCTAATTTTTTCATCAACAAAACCAGTATGATTTCCAATTTCATTTTCTAT TTTTTTTCTGGTTTACTTACAAGTTTAATTTATTCTGTCACAAGCTAACAGCTTCACAATTCTCATAAATGATAGGTACT GATTTGGGCAGTGATTCCAAATCTAAAGGGTTCACAAATGATTGCTTCAAGGCAGATTTTTCGCCTTGTAGCCATTTTCC AGTACCTCTTGAGGTTGTATCTTCTTTATCCTCTGTCTTCTGAAATCGTCAAGGCAAATGGGGTAATGATAGAAAAAGCT TGGGCCGGGGCAGCATATAATCTGACTCTCTACATGATGGCAAGTCACGTAAGTCATTAGAAATCCTTCTATAATTGATT CTAGAGCCACGATGATTCTGAAATTTATAAGCTATCAGAATTGATTCTGAAAAAAGAGAAGTTAATCCAAAGATGATTTT TTTCCAGACCAGTAGCTTCCTAGTCTGGAAATATCAATATTTTATTTCCTGTTTTTACATGGTTCTTTAGTTGCTTCTGA TTCAGTTCTTAACTTTCACTATATTTCAAAAAGGTTTTAGGATCCACTTGGTACCTGTTATCGATTGAACGGCAAGATGA ATGCTGGAAGAAAGCTTGTGCACTTCAGTACCCAAACTGCAAGTATCATTATCTTGAATGTCAAAGCATAGGTGACCCAG ATAGAGCTGCTTGGTTCAGATCAAGCAATCTCTCAGGTCTATGTGACCAGAACAGTGATTTCTTTCAATTTGGCATTTTT GCTGATGCTCTTAATCTAGAAATTACGAGCTCAAAATTCTTCAACAAATACTGTTATTGTCTTTGGTGGGGACTGAGGAA TCTAAGGTAACTATTTTTTTATGTCAAAATTGGATAATTATCAAAGAACAAAGTTATATACCATCTTTAATTTAGCCAAG TCAGGTTTATGGCAACAAACACAATCCAGAACATAATTATCACTTCAAAGACTAGTGATAGCTCAGATCATTATAAAATT TCAACCAACAATATCTTAGTGAATTACAAATTGATGAAAGCAAAAATAGGCTTAAGCTTTCCTTTTATGGTTTACTATAA TCAAGACCTTCATGTTCTTGAAGAAAATATTGTCTCTTTGGTGTTTTGGCAACCATTTGCTCTTGATCCTTGACATATTT TAAGTCCACACTAGAGTTTGTAATATTCTAACCAATTCTGTGCCAATTATTCAGCTCTGTTGGACAGAATCTCATAACAA GCACACATGTTGCAGAGATCAATTTTGCTGTGATTGTTGCGATTCTTGGATTGGTGCTTTTTGCATTGCTCATAGGCAAT ATGCAAGTAAGTCTATCTGTTGTCACTCTTGTAATGTTCTGTAAGTGTCTGGACTTGACAACTATTTGCAAAATAAACTC ATGATCTGGTGGTATATCAATATCAGTGTTCTTTAATATCAAGATTATTTATTATTTATTGCTATCTGAGTTTGCATTTT GACTTCCATTTATTTAGAGCTCAAAATGAAATCTCTGAAACTTATGAGATGGATTTTCTTTTCATAGAGTGGAAATTTAT TGTCATACTTTGTAGTGAATTGATGATTGATCATCCACATGTTAATTATTAAGCTTATAAGAAACTCTAATTGAGATCAT AAAACTGATGCTCATATCTTGTATTTAATCCTTTTCTGATTAACAGACCTACCTACAATCCACCACTATGCGGCTAGAAG AATGGAGAATAAGAAGGACAGACACGGAAAGATGGATGCATCACAGGCAGCTCCCTGGTTACCTGAAGCAAAGTGTGCGC CGCCATGACCAATTCAGATGGGTAGCTACTCGAGGAGTAGACGAGGAAGCTATTCTCAGAGACCTTCCTGCGGATCTCAG ACGCGACATAAAACGCCACCTTTGCCTTAATCTAGTCAGACAAGTAAGTGCATCTTTAGAAAATCCTTCTACAAAAGATT CTGAGGTCAAAATTATTTATGGGCAGAAGCTACAAAAAGTTCTAAGAGCAACTTCTGATTAATAGAAGTGATTCTGTGTA AAGAGCAGCTGATCCAAACAAACTATAAATCTTTGTATTTTTCACTCTTCGAAACAGTTTTGTTTGATTTATGGTAGTTT CAAATAAGCTTCTAATACAGCACTGAAATCCTAGTCAGAAAACATAATATGTGCTTTTATCTTGCTAATGTGTTTCTTGA GACACAAGCAAGTGAAAATGAAGTTGTTAGTGCATATTGAAAATTCTTCTACAATTACAATTGATCCCAAAATCAAAATT AATTATGGGGTTAAACTTCTTGTAATTACCTTCTAAGTACTAAAATTGATTTTGAGAAAAAATAAGCTGTTCCAAACGTG CTAAAGGATTGACCAAAAAAAAATGCTACAGGTACCATTATTTGATGACATGGATGAGAAGATGCTAGATGCAATATGCG AAAGGCTGAAACCTTCTTTGTGCACACCAGGCACGTGCCTAGTCCGTGAAGGTGACCCTGTCAATGAGATGCTCTTCATC GTAAGAGGTCGCCTAGACTCTTGCACCACCAACGGCGGTAGGACCGGGTTCTTTAACAGCTCCGGACTCGGCTCCGGCGA CTTCTGCGGCGAAGAGCTTCTGCCATGGGCCTTGGACCCTCGTTCAACCATTGTCCTTCCCTCCTCAACTCGAACCGTGG AAGCCATAACCGAAGTTGAAGCTTTCGCGCTCATAGCCGAGGACTTGAAGTTCGTGGCGACGCAGTTCCGGAGGCTGCAC TGCAAGCAGCTGAGGCACACGTTCAGGTTCCATTCCCATCAGTGGAGGACGTGGGCTGCTTGTTTCATACAAGCTGCATG GTTCAGGTATAAGAGAATGAAAGAAACGAGTGAGCTGAAGAGCAAGGAGAATATGATGGTGTCCTATGATTATGGGCCTG GAAGTGGTGGCAATGAACATTTCTCTGCACCCTTGCAGGGCCCATTGGGCTCAAACTTTTATGCTGCAAAGCTTGTGGCT AGCCCAAGGAGAGGTAGGAGCTTGAGATATGGTTCTGAGCTTGAGATTCTTGGGGCATTAAGGAAGCCCCTTGAGCCTGA TTTCACTCATGATGAAAGTTGA
CDS sequence (LotjaGi5g1v0079200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGACAAAAGGAAGTTAAGGAAGGATGCAAGAGAAGTTTCCAGGGTATTTTCTGAGGATTATGATGCAGCAGAGAT GTTGGTGTTTGATCCTAGAGGGCCTAGAATAAATAGATGGAACAAAATTTTCTTAGCAGCTTGTTTGGTTTCATTAGTTG TGGATCCCTTATTCTTTTACTTACCAGTGGCTAAGAAAGATAAGTGCATTGACATGTCTCTTGGACTTGAAGTGTCCCTA ACCATAATCCGATCAATGGTTGATGCATTTTACATTCTTCAGATTTATGTTAGGTTTCAAACTGCTTATATTGCTCCTTC CTCTCGCGTTTCGGGCAGAGGAGAGCTTGTTTTAGACTCTTCAAAGATTGCATCAAAGTACCTCAGCAGAGACTTCTGGA TTGACCTAGTGGCTGCTCTACCACTTCCACAGGTACTGATTTGGGCAGTGATTCCAAATCTAAAGGGTTCACAAATGATT GCTTCAAGGCAGATTTTTCGCCTTGTAGCCATTTTCCAGTACCTCTTGAGGTTGTATCTTCTTTATCCTCTGTCTTCTGA AATCGTCAAGGCAAATGGGGTAATGATAGAAAAAGCTTGGGCCGGGGCAGCATATAATCTGACTCTCTACATGATGGCAA GTCACGTTTTAGGATCCACTTGGTACCTGTTATCGATTGAACGGCAAGATGAATGCTGGAAGAAAGCTTGTGCACTTCAG TACCCAAACTGCAAGTATCATTATCTTGAATGTCAAAGCATAGGTGACCCAGATAGAGCTGCTTGGTTCAGATCAAGCAA TCTCTCAGGTCTATGTGACCAGAACAGTGATTTCTTTCAATTTGGCATTTTTGCTGATGCTCTTAATCTAGAAATTACGA GCTCAAAATTCTTCAACAAATACTGTTATTGTCTTTGGTGGGGACTGAGGAATCTAAGCTCTGTTGGACAGAATCTCATA ACAAGCACACATGTTGCAGAGATCAATTTTGCTGTGATTGTTGCGATTCTTGGATTGGTGCTTTTTGCATTGCTCATAGG CAATATGCAAACCTACCTACAATCCACCACTATGCGGCTAGAAGAATGGAGAATAAGAAGGACAGACACGGAAAGATGGA TGCATCACAGGCAGCTCCCTGGTTACCTGAAGCAAAGTGTGCGCCGCCATGACCAATTCAGATGGGTAGCTACTCGAGGA GTAGACGAGGAAGCTATTCTCAGAGACCTTCCTGCGGATCTCAGACGCGACATAAAACGCCACCTTTGCCTTAATCTAGT CAGACAAGTACCATTATTTGATGACATGGATGAGAAGATGCTAGATGCAATATGCGAAAGGCTGAAACCTTCTTTGTGCA CACCAGGCACGTGCCTAGTCCGTGAAGGTGACCCTGTCAATGAGATGCTCTTCATCGTAAGAGGTCGCCTAGACTCTTGC ACCACCAACGGCGGTAGGACCGGGTTCTTTAACAGCTCCGGACTCGGCTCCGGCGACTTCTGCGGCGAAGAGCTTCTGCC ATGGGCCTTGGACCCTCGTTCAACCATTGTCCTTCCCTCCTCAACTCGAACCGTGGAAGCCATAACCGAAGTTGAAGCTT TCGCGCTCATAGCCGAGGACTTGAAGTTCGTGGCGACGCAGTTCCGGAGGCTGCACTGCAAGCAGCTGAGGCACACGTTC AGGTTCCATTCCCATCAGTGGAGGACGTGGGCTGCTTGTTTCATACAAGCTGCATGGTTCAGGTATAAGAGAATGAAAGA AACGAGTGAGCTGAAGAGCAAGGAGAATATGATGGTGTCCTATGATTATGGGCCTGGAAGTGGTGGCAATGAACATTTCT CTGCACCCTTGCAGGGCCCATTGGGCTCAAACTTTTATGCTGCAAAGCTTGTGGCTAGCCCAAGGAGAGGTAGGAGCTTG AGATATGGTTCTGAGCTTGAGATTCTTGGGGCATTAAGGAAGCCCCTTGAGCCTGATTTCACTCATGATGAAAGTTGA
Protein sequence (LotjaGi5g1v0079200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDKRKLRKDAREVSRVFSEDYDAAEMLVFDPRGPRINRWNKIFLAACLVSLVVDPLFFYLPVAKKDKCIDMSLGLEVSL TIIRSMVDAFYILQIYVRFQTAYIAPSSRVSGRGELVLDSSKIASKYLSRDFWIDLVAALPLPQVLIWAVIPNLKGSQMI ASRQIFRLVAIFQYLLRLYLLYPLSSEIVKANGVMIEKAWAGAAYNLTLYMMASHVLGSTWYLLSIERQDECWKKACALQ YPNCKYHYLECQSIGDPDRAAWFRSSNLSGLCDQNSDFFQFGIFADALNLEITSSKFFNKYCYCLWWGLRNLSSVGQNLI TSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTMRLEEWRIRRTDTERWMHHRQLPGYLKQSVRRHDQFRWVATRG VDEEAILRDLPADLRRDIKRHLCLNLVRQVPLFDDMDEKMLDAICERLKPSLCTPGTCLVREGDPVNEMLFIVRGRLDSC TTNGGRTGFFNSSGLGSGDFCGEELLPWALDPRSTIVLPSSTRTVEAITEVEAFALIAEDLKFVATQFRRLHCKQLRHTF RFHSHQWRTWAACFIQAAWFRYKRMKETSELKSKENMMVSYDYGPGSGGNEHFSAPLQGPLGSNFYAAKLVASPRRGRSL RYGSELEILGALRKPLEPDFTHDES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 42 | 42 | - | – | |
| PANTHER | 8 | 661 | 654 | 0.0 | – | |
| PANTHER | 8 | 661 | 654 | 0.0 | – | |
| SUPERFAMILY | 31 | 354 | 324 | 1.27E-30 | – | |
| Pfam | 40 | 359 | 320 | 3.1E-29 | ||
| TMHMM | 43 | 64 | 22 | - | – | |
| Phobius | 43 | 61 | 19 | - | – | |
| Phobius | 62 | 80 | 19 | - | – | |
| Phobius | 81 | 99 | 19 | - | – | |
| PRINTS | 95 | 104 | 10 | 1.0E-5 | ||
| Phobius | 100 | 131 | 32 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| Phobius | 153 | 163 | 11 | - | – | |
| Phobius | 164 | 182 | 19 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 183 | 202 | 20 | - | – | |
| TMHMM | 203 | 225 | 23 | - | – | |
| Phobius | 203 | 224 | 22 | - | – | |
| PRINTS | 212 | 222 | 11 | 1.0E-5 | ||
| Phobius | 225 | 327 | 103 | - | – | |
| PRINTS | 301 | 318 | 18 | 1.0E-5 | ||
| PRINTS | 327 | 338 | 12 | 1.0E-5 | ||
| Phobius | 328 | 349 | 22 | - | – | |
| TMHMM | 328 | 350 | 23 | - | – | |
| PRINTS | 345 | 354 | 10 | 1.0E-5 | ||
| Phobius | 350 | 665 | 316 | - | – | |
| Gene3D | 359 | 423 | 65 | 1.1E-11 | – | |
| SUPERFAMILY | 362 | 552 | 191 | 6.5E-31 | ||
| PRINTS | 395 | 402 | 8 | 1.0E-5 | ||
| Gene3D | 430 | 550 | 121 | 1.9E-38 | ||
| CDD | 432 | 551 | 120 | 1.29622E-15 | ||
| ProSiteProfiles | 432 | 517 | 86 | 13.338 | ||
| SMART | 432 | 563 | 132 | 5.7E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0079200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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