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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008991
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We have found 80 results. Now displaying 2 of 2 with 50 rows per page. This search has taken 7.529s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi3g1v0218100.1
n.a. Transcription termination/antitermination protein NusG; TAIR: AT3G09210.1 plastid transcriptionally active 13; Swiss-Prot: sp|Q9HWC4|NUSG_PSEAE Transcription termination/antitermination protein NusG; TrEMBL-Plants: tr|A0A151TKX6|A0A151TKX6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0218100 LjG1.1_chr3 32869942 32873286 -
2 domain predictions
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LotjaGi3g1v0233600.1
n.a. 50S ribosomal L24-like protein; TAIR: AT5G54600.1 Translation protein SH3-like family protein; Swiss-Prot: sp|P11893|RK24_PEA 50S ribosomal protein L24, chloroplastic; TrEMBL-Plants: tr|C6T0A2|C6T0A2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0233600 LjG1.1_chr3 36946983 36950350 +
2 domain predictions
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LotjaGi4g1v0127000.1
n.a. 50S ribosomal protein L2; TAIR: AT4G36130.1 Ribosomal protein L2 family; Swiss-Prot: sp|Q42064|RL83_ARATH 60S ribosomal protein L8-3; TrEMBL-Plants: tr|V7CDF5|V7CDF5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0127000 LjG1.1_chr4 18537644 18539559 -
2 domain predictions
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LotjaGi4g1v0167900_LC.1
n.a. Ribosomal protein L2 family; TAIR: AT4G36130.1 Ribosomal protein L2 family; Swiss-Prot: sp|P29766|RL8_SOLLC 60S ribosomal protein L8; TrEMBL-Plants: tr|A0A1J7H357|A0A1J7H357_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0167900_LC LjG1.1_chr4 32202047 32212682 -
2 domain predictions
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LotjaGi4g1v0167900_LC.2
n.a. Ribosomal protein L2 family; TAIR: AT4G36130.1 Ribosomal protein L2 family; Swiss-Prot: sp|P29766|RL8_SOLLC 60S ribosomal protein L8; TrEMBL-Plants: tr|A0A1J7H357|A0A1J7H357_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0167900_LC LjG1.1_chr4 32202098 32212682 -
2 domain predictions
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LotjaGi4g1v0167900_LC.3
n.a. Ribosomal protein L2 family; TAIR: AT4G36130.1 Ribosomal protein L2 family; Swiss-Prot: sp|P29766|RL8_SOLLC 60S ribosomal protein L8; TrEMBL-Plants: tr|A0A1J7H357|A0A1J7H357_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0167900_LC LjG1.1_chr4 32202107 32212682 -
2 domain predictions
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LotjaGi4g1v0167900_LC.4
n.a. Ribosomal protein L2 family; TAIR: AT4G36130.1 Ribosomal protein L2 family; Swiss-Prot: sp|P29766|RL8_SOLLC 60S ribosomal protein L8; TrEMBL-Plants: tr|A0A1J7H357|A0A1J7H357_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0167900_LC LjG1.1_chr4 32202108 32212682 -
2 domain predictions
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LotjaGi4g1v0203600.1
n.a. 60S ribosomal protein L27; TAIR: AT3G22230.1 Ribosomal L27e protein family; Swiss-Prot: sp|Q05462|RL27_PEA 60S ribosomal protein L27; TrEMBL-Plants: tr|A0A1J7GJL5|A0A1J7GJL5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0203600 LjG1.1_chr4 47071472 47072385 +
2 domain predictions
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LotjaGi4g1v0252100.3
n.a. Eukaryotic translation initiation factor 5A; TAIR: AT1G13950.1 eukaryotic elongation factor 5A-1; Swiss-Prot: sp|Q9AXQ4|IF5A3_SOLLC Eukaryotic translation initiation factor 5A-3; TrEMBL-Plants: tr|I3SPM6|I3SPM6_LOTJA Eukaryotic translation initiation factor 5A; Found in the gene: LotjaGi4g1v0252100 LjG1.1_chr4 60580028 60581244 -
2 domain predictions
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LotjaGi4g1v0252100.4
n.a. Eukaryotic translation initiation factor 5A; TAIR: AT1G13950.1 eukaryotic elongation factor 5A-1; Swiss-Prot: sp|P56336|IF5A4_SOLTU Eukaryotic translation initiation factor 5A-4; TrEMBL-Plants: tr|I3SPM6|I3SPM6_LOTJA Eukaryotic translation initiation factor 5A; Found in the gene: LotjaGi4g1v0252100 LjG1.1_chr4 60580028 60581244 -
2 domain predictions
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LotjaGi4g1v0252100.5
n.a. Eukaryotic translation initiation factor 5A; TAIR: AT1G13950.1 eukaryotic elongation factor 5A-1; Swiss-Prot: sp|Q9AXJ4|IF5A_MANES Eukaryotic translation initiation factor 5A; TrEMBL-Plants: tr|I3SPM6|I3SPM6_LOTJA Eukaryotic translation initiation factor 5A; Found in the gene: LotjaGi4g1v0252100 LjG1.1_chr4 60580657 60581244 -
2 domain predictions
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LotjaGi4g1v0287700.1
n.a. Eukaryotic translation initiation factor 5A; TAIR: AT2G24230.1 Leucine-rich repeat protein kinase family protein; Swiss-Prot: sp|C0LGK9|Y2242_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g24230; TrEMBL-Plants: tr|A0A0R0FIA7|A0A0R0FIA7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0287700 LjG1.1_chr4 65997835 66013996 +
2 domain predictions
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LotjaGi4g1v0287700.3
n.a. Eukaryotic translation initiation factor 5A; TAIR: AT1G13950.1 eukaryotic elongation factor 5A-1; Swiss-Prot: sp|Q945F4|IF5A2_MEDSA Eukaryotic translation initiation factor 5A-2; TrEMBL-Plants: tr|I1JGP5|I1JGP5_SOYBN Eukaryotic translation initiation factor 5A; Found in the gene: LotjaGi4g1v0287700 LjG1.1_chr4 66011962 66015261 +
2 domain predictions
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LotjaGi4g1v0340400_LC.1
n.a. 50S ribosomal protein L24; TAIR: AT5G23535.1 KOW domain-containing protein; Swiss-Prot: sp|A5VLJ4|RL24_LACRD 50S ribosomal protein L24; TrEMBL-Plants: tr|A0A0D3E1K4|A0A0D3E1K4_BRAOL Uncharacterized protein; Found in the gene: LotjaGi4g1v0340400_LC LjG1.1_chr4 72013902 72014837 -
2 domain predictions
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LotjaGi4g1v0403300.1
n.a. 60S ribosomal protein L6; TAIR: AT1G74050.1 Ribosomal protein L6 family protein; Swiss-Prot: sp|P34091|RL6_MESCR 60S ribosomal protein L6; TrEMBL-Plants: tr|I3S6L4|I3S6L4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0403300 LjG1.1_chr4 78021272 78025595 +
2 domain predictions
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LotjaGi5g1v0169700.1
n.a. 50S ribosomal protein L24; TAIR: AT5G23535.1 KOW domain-containing protein; Swiss-Prot: sp|A9VP88|RL24_BACWK 50S ribosomal protein L24; TrEMBL-Plants: tr|I3S275|I3S275_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0169700 LjG1.1_chr5 43457897 43460929 +
2 domain predictions
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LotjaGi5g1v0169700.2
n.a. 50S ribosomal protein L24; TAIR: AT5G23535.1 KOW domain-containing protein; Swiss-Prot: sp|A9VP88|RL24_BACWK 50S ribosomal protein L24; TrEMBL-Plants: tr|I3S275|I3S275_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0169700 LjG1.1_chr5 43458230 43459880 +
2 domain predictions
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LotjaGi5g1v0169700.3
n.a. 50S ribosomal L24-like protein; TAIR: AT5G23535.1 KOW domain-containing protein; Swiss-Prot: sp|A9VP88|RL24_BACWK 50S ribosomal protein L24; TrEMBL-Plants: tr|I3S275|I3S275_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0169700 LjG1.1_chr5 43458258 43459096 +
2 domain predictions
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LotjaGi5g1v0189400.1
n.a. 60S ribosomal L14-like protein; TAIR: AT2G20450.1 Ribosomal protein L14; Swiss-Prot: sp|P55844|RL14_PEA Probable 60S ribosomal protein L14; TrEMBL-Plants: tr|I3S398|I3S398_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0189400 LjG1.1_chr5 47876972 47880047 +
2 domain predictions
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LotjaGi5g1v0189400.2
n.a. 60S ribosomal L14-like protein; TAIR: AT2G20450.1 Ribosomal protein L14; Swiss-Prot: sp|P55844|RL14_PEA Probable 60S ribosomal protein L14; TrEMBL-Plants: tr|I3S398|I3S398_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0189400 LjG1.1_chr5 47877607 47878528 +
2 domain predictions
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LotjaGi5g1v0223400.1
n.a. 50S ribosomal protein L2, chloroplastic; TAIR: ATCG00830.1 ribosomal protein L2 (ChrC); Swiss-Prot: sp|Q9B1H9|RK2_LOTJA 50S ribosomal protein L2, chloroplastic; TrEMBL-Plants: tr|G1D799|G1D799_RICCO 50S ribosomal protein L2, chloroplastic; Found in the gene: LotjaGi5g1v0223400 LjG1.1_chr5 53000309 53000891 -
2 domain predictions
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LotjaGi5g1v0223400.2
n.a. 50S ribosomal protein L2, chloroplastic; TAIR: ATCG00830.1 ribosomal protein L2 (ChrC); Swiss-Prot: sp|Q9B1H9|RK2_LOTJA 50S ribosomal protein L2, chloroplastic; TrEMBL-Plants: tr|G1D799|G1D799_RICCO 50S ribosomal protein L2, chloroplastic; Found in the gene: LotjaGi5g1v0223400 LjG1.1_chr5 53000309 53000891 -
2 domain predictions
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LotjaGi6g1v0003300.1
n.a. 60S ribosomal L14-like protein; TAIR: AT2G20450.1 Ribosomal protein L14; Swiss-Prot: sp|P55844|RL14_PEA Probable 60S ribosomal protein L14; TrEMBL-Plants: tr|I3T5Q5|I3T5Q5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0003300 LjG1.1_chr6 719297 721180 -
2 domain predictions
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LotjaGi6g1v0031100.1
n.a. Elongation factor P; TAIR: AT4G26310.1 elongation factor P (EF-P) family protein; Swiss-Prot: sp|A4YTY9|EFP_BRASO Elongation factor P; TrEMBL-Plants: tr|A0A0L9T427|A0A0L9T427_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0031100 LjG1.1_chr6 5809669 5828274 -
2 domain predictions
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LotjaGi6g1v0144300.1
n.a. 50S ribosomal protein L19, putative; TAIR: AT4G11630.1 Ribosomal protein L19 family protein; Swiss-Prot: sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic; TrEMBL-Plants: tr|I3SL49|I3SL49_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0144300 LjG1.1_chr6 41539333 41544715 +
2 domain predictions
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LotjaGi6g1v0243000.1
n.a. 60S ribosomal protein L27; TAIR: AT4G15000.1 Ribosomal L27e protein family; Swiss-Prot: sp|Q05462|RL27_PEA 60S ribosomal protein L27; TrEMBL-Plants: tr|I1MGV6|I1MGV6_SOYBN 60S ribosomal protein L27; Found in the gene: LotjaGi6g1v0243000 LjG1.1_chr6 55546522 55549957 -
2 domain predictions
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LotjaGi6g1v0337500.1
n.a. 60S ribosomal protein L26, putative; TAIR: AT3G49910.1 Translation protein SH3-like family protein; Swiss-Prot: sp|P51414|RL261_ARATH 60S ribosomal protein L26-1; TrEMBL-Plants: tr|A0A151T7I3|A0A151T7I3_CAJCA 60S ribosomal protein L26-1; Found in the gene: LotjaGi6g1v0337500 LjG1.1_chr6 65199371 65201996 +
2 domain predictions
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LotjaGi6g1v0362800.1
n.a. 50S ribosomal protein L2, putative; TAIR: AT2G44065.1 Ribosomal protein L2 family; Swiss-Prot: sp|P0C8K6|RM02_ORYSA 60S ribosomal protein L2, mitochondrial; TrEMBL-Plants: tr|I3SGD7|I3SGD7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0362800 LjG1.1_chr6 67445593 67447235 +
2 domain predictions
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LotjaGi6g1v0362800.2
n.a. 50S ribosomal protein L2, putative; TAIR: AT2G44065.1 Ribosomal protein L2 family; Swiss-Prot: sp|P0C8K6|RM02_ORYSA 60S ribosomal protein L2, mitochondrial; TrEMBL-Plants: tr|I3SGD7|I3SGD7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0362800 LjG1.1_chr6 67445993 67446660 +
2 domain predictions
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LotjaGi6g1v0363100.1
n.a. 60S ribosomal protein L27; TAIR: AT4G15000.1 Ribosomal L27e protein family; Swiss-Prot: sp|Q05462|RL27_PEA 60S ribosomal protein L27; TrEMBL-Plants: tr|I3SZQ1|I3SZQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0363100 LjG1.1_chr6 67454435 67456888 +
2 domain predictions
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