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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0218100 |
| Transcript ID | LotjaGi3g1v0218100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription termination/antitermination protein NusG; TAIR: AT3G09210.1 plastid transcriptionally active 13; Swiss-Prot: sp|Q9HWC4|NUSG_PSEAE Transcription termination/antitermination protein NusG; TrEMBL-Plants: tr|A0A151TKX6|A0A151TKX6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0218100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32869942..32873286) extracted from Lotus japonicus Gifu genome v1.2.
GTTTACAAAATCATATAATTTTTTTATTTATTTAAAAATGATAAGAATCACGAGGGATGAGTTATCTTATGTGGTAGAAG AACCAGAAGAAGATGAAGGGGGTAGTACTTCAGCTATGGAATCCACAACCACCACCACCACGCTTACAGCTCCACCCTCT CTCTCCTCTCCCCTCCCTCCCTTCTCTCTCCTTCTCCCTCCACCAAACCAGACCCTCCAAGCTCTCAATCTCCGCCACCG TGGAATCCACCGAGACCCACCAGCTCACGGCGAGGGAGAGAAGGCGGCTGAGGAACGAGAGAAGAGAGGGCACCAACTGG AAGGAAGAGGTGGAGGAGAAGCTCATCAAGAAGCCGAAGAAGGAGAACAAGTCATGGATGGATGAGCTCAACCTTGATAA CCTCATGAAGTTGGGTCCCCAATGGTGGGTCGTTCGTGTCTCCCGGATTAAGGCTCAGTACACTGCCCAAGCCCTCGCTC GCTCACTTGCTAAGCACTTCCCTGACATTGATTTTAAGGTTAGTTGTTGGGGTTGTGAATTTTGGAAGCACATTATTTGA CTGCATTTTATGTGGATAAGAAATGGTTTAGCTCTGTATTTGGTTTTCATGAAAAAATTTGAGTGTAGTTTTTATGTTCG TTTGAATGAGATTTTGGGGTATGTGTATGAGGAATTGTTTTTGATAGAAAGGGAAAGTAGGATAAATACTTTAATCTAAA GGATGATGTAAGTGTTTTTTTTTTCTCAAGATATTATAGTTAGTTACTATGGAAATAGTAAAAATTAGTTTCACACATAG TTTAGATCATATTTGATTGGTTTAAACCGCATGTATCCTCTATTGAGACAATCTTGTTTGAGCCGAATAGGACCACTATA GGTGGCAAACACTCTCACTATCGAGTACTTAACGCGGCTGAACTCAAATCCGAGACCTCTGCTTAAGCTAGAACAACCCC GTGTCAGTTGTTCTGCGCACTTGGTGGTTGTAGGATGTGGAAATATGATTAGAAATGTACAATTACTAAATTCATGAAAG TAATTCTTTACTTTTTTTAAACACTATGTAACTTTCTTAATTCAAAAATGAAAATTTTAACTTATATTTGCTTAATTTTT GGCTGAAATCTTCCCTCCAAACATATACTTAGGCCCCGTTTGGAAAAACAGCTTAATTAAGCACTTATGGTCATAAGCGC TTATGACATAAGCGCTTATTCATAAGCGCTTATTCATAAGCTATTTTTAAAAATTTATTGAAATAAATTAAAAATAAGTT GTATATAAGCATAAGCTGTTTTTCATAAGCTATCCTGAGTAGCTTATGAAAATAAGCTGAAAATTGCTTATGGCAGGTCA TAAGCTGTTTGCATAAGCCCTCCCAAACGCTGGCATAAGAGCTTATGCTGTCAGATAAGCTCAAATAAGCTCTTCCAAAC TGGGCCTTAAAGAATGACAATGTTGCTTGGAGCTTGTACATAACAACCTATATTTAGAGAATGGCAATGTTACTTGGAGC TTGTACCCCATTGCAAAATAAAGGATGAATGAATAAGATCTGATGTTTCACTTTCATACAATGTTTGTTTCATTATGTTA CATATTTGTTGATGTGGTAGTGAAATTTGGTTTTAGGTATATGCTCCAGCTGTTCATGAGAAAAGGAAATTGAAGAATGG TTCGCTCTCCGTCAAACCAAAAGCTCTGTTCCCAGGTTGTATTTTCTTAAGATGTGTTTTGAACAAGCCACTGCATGACT TCATAAAAGAGTATGATGGTATTGGAGGCTTTGTTGGTTCCTTGGTTGGAAATACGTAAGCATCTGCTGCTTGTGTTTGA TGCATTTTGATTAATTTTGATGAATTGAGTTACTACCTACTGACCTTATTTTATAAGATTTCGAATGGGTGGTGTCTTTT TAGCTTTCATATACTCCTAGTGATTGATTTCAGATATTAAAAACACCAAATATTTGATGTCTTTAATGTATATTTTTCCC TGTTCAGTCTAACTGAAAGTTCTCAACTGTTTTTATCATTTTTAGAAAGAGACAGATTAACAAACCAAGGCCAGTATCTG AAGTGGACATGGAAGCAATCTTCAGACAGGCAAAAGAAGAACAAGAAAAGGCTGACCGAGCATTCGAGGAAGAAGAGAAA AAAGCTGTTGTAAATTCTGCGATTACAAATGCAGAGTCAGAACCTGATGTTTCAAATGGTACTGTTGATTCTAAGCCTAA GAGAGGATCTAGAAAAACATCTAACCAGCTCACAGATGCTTCATCTGCTCGAAAAGATTATAAACTCCTTGTTCCAGGTT CCACCGTACGAATTGTATCTGGAACATTTGCAGGGTTTGCAGGAACCCTCAAGAAGCTGAATCGGAAAACCAAAATGGTG AGTTGCTTCTTTAACATGAACAAATTGACATTGGCATTAAGACTTTTGTCCAACGAAAAAAAGGAAGATATTCACTAGTT TATGTGATGAAAATTGCTGGTATGCCTACATGAAAATCAAAATGGCTTTGAAAGGTGGAAATTATGTGCGACTTAGTGGC TCAAGTAATTACATGAATATTTTTTTTTATCCTTCTTTGTATTAACTCAATTAAGCTTTCTTCATGCAGGCTACTGTGCT TTATACTATATTTGGGAAGGAGAACATAGTAGAGTTAGATGTTAGTGAAATTGCTCTTGAGACTAACTGATGCCTGTAGA TTCTCTGACCTAATGGTATGTTCGCATATTCCACTGTACTCGTAATACACATGTATGTACACAACTTTTTATCAGTGGCA TTGAGAAAAAAACTCGAAAGAGTTGCGCACTGCATTCTCTTTCGGATTGTTCCATTTGCAGGTTAAGCCAAATTTTACAT GAAATTAAATGCATTCTTACCTGGTGCATACTAGTGTATTATGAGTCCTGGCGAACTGGGGAAGTTAGGGACTTTGCTCT CTGATATTAAGATTAGCGGGACATGGATAGAAGCTGTTTGCTGATGCTCAATCCCCAAAATTGAAATCTGAGATATCTAT ATGATGAAGGCCTAAAATTTGAAGTTTTTTTGTTGCATTATGCTTTTGCCAATGCACGTTTCATGACTGAATCTCTCATT CCCTCTGGCTCCATTGAAGATACCTAGTTATGACTATGACAGAGATAAAAAAATGATTTGGATTTGCTGCCACTTCAACT AGAAACAGATTAGGATCATATGACAGGGTTTTCTTATCCACTGTGTAAAAGGTAATTGATATATTTTGTTTTTGTAAAAA AAAATCTTATCCATATGATGAGGATCACATTTTAGTTATTTTAAAATAAAAATATTATTTAAAAA
CDS sequence (LotjaGi3g1v0218100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGGGTAGTACTTCAGCTATGGAATCCACAACCACCACCACCACGCTTACAGCTCCACCCTCTCTCTCCTCTCCC CTCCCTCCCTTCTCTCTCCTTCTCCCTCCACCAAACCAGACCCTCCAAGCTCTCAATCTCCGCCACCGTGGAATCCACCG AGACCCACCAGCTCACGGCGAGGGAGAGAAGGCGGCTGAGGAACGAGAGAAGAGAGGGCACCAACTGGAAGGAAGAGGTG GAGGAGAAGCTCATCAAGAAGCCGAAGAAGGAGAACAAGTCATGGATGGATGAGCTCAACCTTGATAACCTCATGAAGTT GGGTCCCCAATGGTGGGTCGTTCGTGTCTCCCGGATTAAGGCTCAGTACACTGCCCAAGCCCTCGCTCGCTCACTTGCTA AGCACTTCCCTGACATTGATTTTAAGGTATATGCTCCAGCTGTTCATGAGAAAAGGAAATTGAAGAATGGTTCGCTCTCC GTCAAACCAAAAGCTCTGTTCCCAGGTTGTATTTTCTTAAGATGTGTTTTGAACAAGCCACTGCATGACTTCATAAAAGA GTATGATGGTATTGGAGGCTTTGTTGGTTCCTTGGTTGGAAATACAAAGAGACAGATTAACAAACCAAGGCCAGTATCTG AAGTGGACATGGAAGCAATCTTCAGACAGGCAAAAGAAGAACAAGAAAAGGCTGACCGAGCATTCGAGGAAGAAGAGAAA AAAGCTGTTGTAAATTCTGCGATTACAAATGCAGAGTCAGAACCTGATGTTTCAAATGGTACTGTTGATTCTAAGCCTAA GAGAGGATCTAGAAAAACATCTAACCAGCTCACAGATGCTTCATCTGCTCGAAAAGATTATAAACTCCTTGTTCCAGGTT CCACCGTACGAATTGTATCTGGAACATTTGCAGGGTTTGCAGGAACCCTCAAGAAGCTGAATCGGAAAACCAAAATGGCT ACTGTGCTTTATACTATATTTGGGAAGGAGAACATAGTAGAGTTAGATGTTAGTGAAATTGCTCTTGAGACTAACTGA
Protein sequence (LotjaGi3g1v0218100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGVVLQLWNPQPPPPRLQLHPLSPLPSLPSLSFSLHQTRPSKLSISATVESTETHQLTARERRRLRNERREGTNWKEEV EEKLIKKPKKENKSWMDELNLDNLMKLGPQWWVVRVSRIKAQYTAQALARSLAKHFPDIDFKVYAPAVHEKRKLKNGSLS VKPKALFPGCIFLRCVLNKPLHDFIKEYDGIGGFVGSLVGNTKRQINKPRPVSEVDMEAIFRQAKEEQEKADRAFEEEEK KAVVNSAITNAESEPDVSNGTVDSKPKRGSRKTSNQLTDASSARKDYKLLVPGSTVRIVSGTFAGFAGTLKKLNRKTKMA TVLYTIFGKENIVELDVSEIALETN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 52 | 344 | 293 | 3.6E-96 | ||
| PANTHER | 52 | 344 | 293 | 3.6E-96 | – | |
| Gene3D | 101 | 226 | 126 | 7.0E-14 | ||
| SMART | 108 | 224 | 117 | 3.7E-19 | ||
| SUPERFAMILY | 109 | 226 | 118 | 1.44E-15 | ||
| CDD | 110 | 221 | 112 | 1.5967E-45 | – | |
| Pfam | 110 | 220 | 111 | 2.1E-7 | ||
| Coils | 217 | 241 | 25 | - | – | |
| MobiDBLite | 246 | 264 | 19 | - | – | |
| MobiDBLite | 246 | 280 | 35 | - | – | |
| SMART | 289 | 316 | 28 | 0.0033 | ||
| Gene3D | 290 | 341 | 52 | 6.7E-12 | ||
| CDD | 290 | 340 | 51 | 4.73269E-12 | – | |
| SUPERFAMILY | 291 | 340 | 50 | 4.51E-9 | ||
| Pfam | 292 | 322 | 31 | 6.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0218100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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