Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0287700.3

Overview

Field Value
Gene ID LotjaGi4g1v0287700
Transcript ID LotjaGi4g1v0287700.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic translation initiation factor 5A; TAIR: AT1G13950.1 eukaryotic elongation factor 5A-1; Swiss-Prot: sp|Q945F4|IF5A2_MEDSA Eukaryotic translation initiation factor 5A-2; TrEMBL-Plants: tr|I1JGP5|I1JGP5_SOYBN Eukaryotic translation initiation factor 5A; Found in the gene: LotjaGi4g1v0287700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:66011962..66015261) extracted from Lotus japonicus Gifu genome v1.2.

AGTATTTAAAGATTTAGCTGATAAGTCGTTAAAAACTGCTTCTTCGTGTGATGAGCTCGAAATTTGAAAAGGGTTTGAGT TAGGATTTGAAGTTTATTATAAAGAGAAAATAGTACACACTTTTAAAAGCGGCTACCAAAGAGTGCCCTTGATTTTGTTT GTTGTGGGTAGAGAAGAGACACAGAGGGAGAAGAGAAGAGAAGAGAAGCATCAACGAATTCCAACATGTCTGACGAAGAG CACCAGTTCGATTCTCATGCGGATTCCGGAGCCTCCAAGACTTATCCTATGCAAGCTGGTACCATTCGCAAAAATGGCTA CATCGTCATCAGGTCCAGGCCTTGCAAGGTTTTTCTTCAATTCCCCCCACGCCTAGTTTGATATTTTCTGGATTTTTTGC TGTGTTGAACAGTTTATTAAAGTTTGTTGTATGCTACTATGCTTATAGGTTGCAGACTCTCAGTTAATGAGATTATGCAT GCTGCATAGCATAATAATAGGGAGGATTAGGTGATATAAGGAAGAAAATCAAAAGAGATAGATGAGTGCTGTTGAAACTA GTACAACTGTGTTTTTCAATTTTATAATGCAAAATTATGGATGTTGTACCTCTAGTAAGTATTCTATTTCTTCTACATAT ATGTTATTGTGTATTCATAAATTCAATGGCTAATCAGCAATTTGATACCCCATGTAGCACAAAAGAATAAAACTTGCTTA TATCATGTTTTGATAAGCTTCTCTTTCATCATGATACAATTTGAAACCCCGAAGCTGCTGATATAAGCTTCTTCCTGGAA TTGGTTTTGGTTTCAGAATCAGTTGTAGAAGGGTTTCCAAACTTGCACTTAGCCTGTTACAGTTTCACTCCTAATCATAC ATATTTATGCTGATGAAGAGTGTCATTTCCTTGACAACAAGGGCACTTTTGTTGTGTTATTTGTTTGTTATAATAATCTG TGATTTTGGTGACGTTTGTTTCTTGACTTATCTGGACAGGTTGTTGAAGTTTCCACATCAAAAACAGGCAAGCATGGACA TGCAAAGTGCCACTTTGTCGCCATTGATGTTTTCAATGGGAGAAAGCTTGAAGATATTGTTCCTTCATCCCACAACTGTG ATGTAATGCAACTGTGTATTGATTTATGTATGCAATGTTTACTTGCTATGCATTTCTCACTCATCATTGCTCTTGCTCTT CTTGCAGGTTCCACACGTGAATCGCACTGATTATCAGCTGATTGATATCTCTGAAGATGGTTTTGTAAGTTTTCTCTTAC TTCCAACACTAGAAGTGTCATGGAAGGCAATGTATTAAGGCTTGTAAAATGAAAATTAGAAAATTAGAAATTAGTATATA AACTACATTGTTGGGGGGTGTTACTTTCTTTTTTGTCTGCTGAGGACACCTTATCCTGAAAACTGAGATTATTCCTTGTG GAAGGTTGCTTTAAAAGATAACGAATTAACAATAGTCTTCTGGCAAGTTCTCAATTCAAGATAAGATGTTTTTGGTACAT AATTCAAGATAAAATGGCATAGGGTGCATTTTTCTCTAGTCTCAACTTGAACAAATATAACTTGGTTTATTTAAAAAAAC AATAGAAATTGAGACCCCAACTTGTAATGAAAAACAAACTCGTCCGTAGCAAGAAGAGCAGACATATAATGCTGATATTT TCTTAGAGTAGCAAACCAATCTTAACTAATTCAAGCGTTTCTTTTAGGTGAGTCTGTTGACTGACAATGGAGGTACCAAG GATGATCTGAAGCTTCCCACTGATGAGACACTGCTTGCTCAGGTATCTTGTTGAAACCATTGTGAAATTGCTTTCCTTGC TTAATGTGTTTTGTTGTTTAGTTATGATCTAAGGCTGCATATGTACTCTCTGCTATGTAAATTTATTTCTTGCATGCTTT TGTGTTACAGATTAAAGATGGATTTAATGAAGGGAAAGATCTTGTGGTTTCTGTCATGTCTGCAATGGGAGAAGAGCATA TCTGTGCCCTGAAGGACATTGGTCCTAAAAATTAAAATGATGTTATGGCTGTGGTTAATGGTTATAGCGCACATTTTCTT CTTATGTTGCTAACAGGTAGTATTTATTTCTGATGCATGTGTGCATAGCATACATAAACTCATTAGCTTGATAAGATGAA ATGAGATATTCCAAAAGAGGTTTTATTCTATTTGCATAACTTTAGTTTGACCACTTTAGATATCATGTTACATGTTTTTG TTTGTTGTTTCGAGTTATGATCAGTGGCGGATCCAGGACTCGGGGTCAGGGGGGTCAAATTTTTCAAATGAGCACATCGA TAAAAATATAATTAAAAACAATTGTAATATGCTTATACATCAGAAATTATACAAATCATAGTTGTCCTCTACGCGATCGT TGAACAATAAGCTCAGAATCATTGTAAAAGCCATTGTATTATCATTGTGTCAAAGCCCCAAAACTGTCATAGGCACTGCA ATAATGGCCCAAAAAAAACGCACCCAATGAGCACAGTATCCTAAAAAAAAACGCACCCAATAATGAGCACTCTGCAATCC TCAATCTTTCTCCAGCCAAAATAACAAGTTAACAACAAGGCTACAAATCTACAATTCAAGAGCATAGTATCCTCACGGCA CTCTACAATCCAATCATACAATGAGCACTGAAAATCTGAAATCCTTTTACTCTCCCACACAAGCTTATGCTAACTTTCAG ATTGCTTCAACAACAGCACAATGATTTGATAAAAAATGTTGGGGTTTTTCAATTTGGGGTTTTCAATTTGGGGGTTTAGG TTTTTAATTTGGGATTTTTTCAATTTGGGGTTTTCAATTTCTAACTAACCTTCAAGCTTCAAGTCTTCAACAGCAGCAGA GAGAGAGAGTGGTGGTGCTTTGGGCGGCTGCCGGTGGGCGATGGTGGTGGACTGGTGGCGTTGGTGGGCTGTGGCTGCCG TGATTCGTGAGTGAAGGAGAGTTGAGACCGTGAGATGAGAGAGTGAGTGCGTGAGGAAGAGAGAGAGAGGAGTGAGTGCG TGAGGAAGAGAGAGAGAGAGAGGAGTGAGGAATGAGTAACTGAGTATTGACTCCTTGACTGGGACCTGGGTGCAATTTTC AAATTTCAGGGGGTTCAAAAAAAATCACTCTAGGGGGGTAAGTAGGAAATTTTTTTTTTTCAGGGGGTTCAACTGAACCC GAACCCCCTAAAGTCAACGTGGGTCCGCCCCTGGTTATGATACATACACACATCTCCACTCCTTTTCCACCTTTATTTTC TATCTATTTCTCTCTTCTTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0287700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGACGAAGAGCACCAGTTCGATTCTCATGCGGATTCCGGAGCCTCCAAGACTTATCCTATGCAAGCTGGTACCAT TCGCAAAAATGGCTACATCGTCATCAGGTCCAGGCCTTGCAAGGTTGTTGAAGTTTCCACATCAAAAACAGGCAAGCATG GACATGCAAAGTGCCACTTTGTCGCCATTGATGTTTTCAATGGGAGAAAGCTTGAAGATATTGTTCCTTCATCCCACAAC TGTGATGTTCCACACGTGAATCGCACTGATTATCAGCTGATTGATATCTCTGAAGATGGTTTTGTGAGTCTGTTGACTGA CAATGGAGGTACCAAGGATGATCTGAAGCTTCCCACTGATGAGACACTGCTTGCTCAGATTAAAGATGGATTTAATGAAG GGAAAGATCTTGTGGTTTCTGTCATGTCTGCAATGGGAGAAGAGCATATCTGTGCCCTGAAGGACATTGGTCCTAAAAAT TAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0287700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSDEEHQFDSHADSGASKTYPMQAGTIRKNGYIVIRSRPCKVVEVSTSKTGKHGHAKCHFVAIDVFNGRKLEDIVPSSHN CDVPHVNRTDYQLIDISEDGFVSLLTDNGGTKDDLKLPTDETLLAQIKDGFNEGKDLVVSVMSAMGEEHICALKDIGPKN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11673:SF32
1 156 156 3.1E-117 –
MobiDBLite
mobidb-lite
1 21 21 - –
PIRSF
PIRSF003025
1 157 157 7.4E-66
IPR001884
PANTHER
PTHR11673
1 156 156 3.1E-117
IPR001884
Gene3D
G3DSA:2.30.30.30
1 85 85 2.0E-44
IPR014722
SUPERFAMILY
SSF50104
15 93 79 6.02E-27
IPR008991
TIGRFAM
TIGR00037
17 153 137 2.5E-41
IPR001884
ProSitePatterns
PS00302
50 57 8 -
IPR019769
SMART
SM01376
85 154 70 2.5E-34
IPR020189
Pfam
PF01287
85 154 70 1.2E-29
IPR020189
SUPERFAMILY
SSF50249
86 156 71 2.11E-25
IPR012340
CDD
cd04468
86 156 71 3.96223E-33 –
Gene3D
G3DSA:2.40.50.140
86 159 74 1.4E-35 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003746
Molecular function Translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
Subterm of
GO:0043022
Molecular function Ribosome binding Interacting selectively and non-covalently with any part of a ribosome.
Subterm of
GO:0045901
Biological process Positive regulation of translational elongation Any process that activates or increases the frequency, rate or extent of translational elongation.
Subterm of
Positively regulates
GO:0045905
Biological process Positive regulation of translational termination Any process that activates or increases the frequency, rate or extent of translational termination.
Subterm of
Positively regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0287700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…