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LotjaGi4g1v0252100.4

Overview

Field Value
Gene ID LotjaGi4g1v0252100
Transcript ID LotjaGi4g1v0252100.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic translation initiation factor 5A; TAIR: AT1G13950.1 eukaryotic elongation factor 5A-1; Swiss-Prot: sp|P56336|IF5A4_SOLTU Eukaryotic translation initiation factor 5A-4; TrEMBL-Plants: tr|I3SPM6|I3SPM6_LOTJA Eukaryotic translation initiation factor 5A; Found in the gene: LotjaGi4g1v0252100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:60580028..60581244) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCTGACGAGGAGCACCATTTCGAGTCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAAGCCGGTACCAT CCGCAAAAACGGCTACATCAACATCAAGAACCGCCCCTGCAAGGTTTAGATCTCGCGTCTTGATTCTTATTATCATTTTT CATTTTCCCCTAATTTCAGGTTTTGATTTGTTCCACTTTTGGTTGATTGAACTGCAGGTTGTTGAAGTTTCCACTTCCAA GACTGGGAAGCACGGTCATGCTAAGTGCCACTTTGTTGGAATTGATATCTTCACTGGCAAGAAGCTTGAGGATATTGTTC CTTCTTCTCATAATTGTGATGTATGCTGCTGCATACCCATTAATCTTATTATGATTTAATTTATTATTTTTTGCGAAAAT TGTTATTAAGATTTTTTTTTTGCGTGGTTAGGTTCCTCATGTGACTCGTACTGATTACCAGCTCATTGATATTTCTGAGG ATGGATTTGTGAGTTTAACTTAACACCTTCCTTTAATTCATTCCATGTTGTTGTTGGTGTTGATTTTTCTTCTGTATTTT TAATTTGTATAAATGCTATTAGGACTAAAATATGTTCACACTTCAATTACGCGAGAACATGGATAAATGAGTGATATAAT AGGTGATGTGATCGGAAATGAAGAGAGCGATATGATGGAAATTGAGTGAAAATGAGATGGAAGAGATAGTGAAGTGTGGA TGTGTCAAAACTCATGTTATTGTTAATGGATAATGTTTGGTGAACACCCTAGTGGTATAGACACTTAGAGAGATAGGAAA AGAAGAGGGTTAAGTGATAGAGATGTGATAGGAAGAAAGAGATAGAAAGAAAAATTGGGTGTATAAAGTGTGTTAATGGT TTATGAATTGGGACTCATTATGAAATGATTTTGTTGTAGGTGAGTCTTCTTACTGAAAGTGGTGGTACCAAGGATGATCT CAAGCTTCCTACTGATGATGCTCTCCTCACTCAGGTTTGTGCAGATCTTTATGGTTTCCATTTTTTCCACTGGATTCACA AATCTAATTTTTTCTTTGTTGCATCTATTTTTTCTGATTACTTATATGTATCATTTGTTTGCTCTGTTGCAGATTAAGGA GGGATTTGCTGAGGGAAAAGATCTTGTTGTTTCTGTCATGTCTGCTATGGGTGAGGAACAGATTAATGCCCTCAAGGATA TTGGACCGAAGAACTAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0252100.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGACGAGGAGCACCATTTCGAGTCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAAGCCGGTACCAT CCGCAAAAACGGCTACATCAACATCAAGAACCGCCCCTGCAAGGTTGTTGAAGTTTCCACTTCCAAGACTGGGAAGCACG GTCATGCTAAGTGCCACTTTGTTGGAATTGATATCTTCACTGGCAAGAAGCTTGAGGATATTGTTCCTTCTTCTCATAAT TGTGATGTTCCTCATGTGACTCGTACTGATTACCAGCTCATTGATATTTCTGAGGATGGATTTGTGAGTCTTCTTACTGA AAGTGGTGGTACCAAGGATGATCTCAAGCTTCCTACTGATGATGCTCTCCTCACTCAGATTAAGGAGGGATTTGCTGAGG GAAAAGATCTTGTTGTTTCTGTCATGTCTGCTATGGGTGAGGAACAGATTAATGCCCTCAAGGATATTGGACCGAAGAAC TAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0252100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSDEEHHFESKADAGASKTYPQQAGTIRKNGYINIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHN CDVPHVTRTDYQLIDISEDGFVSLLTESGGTKDDLKLPTDDALLTQIKEGFAEGKDLVVSVMSAMGEEQINALKDIGPKN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF003025
1 157 157 6.2E-66
IPR001884
PANTHER
PTHR11673:SF32
1 156 156 1.5E-121 –
MobiDBLite
mobidb-lite
1 23 23 - –
PANTHER
PTHR11673
1 156 156 1.5E-121
IPR001884
Gene3D
G3DSA:2.30.30.30
1 85 85 5.3E-46
IPR014722
SUPERFAMILY
SSF50104
15 93 79 7.52E-27
IPR008991
TIGRFAM
TIGR00037
17 153 137 9.7E-40
IPR001884
ProSitePatterns
PS00302
50 57 8 -
IPR019769
Pfam
PF01287
85 154 70 2.4E-28
IPR020189
SMART
SM01376
85 154 70 7.4E-33
IPR020189
SUPERFAMILY
SSF50249
86 156 71 7.42E-25
IPR012340
CDD
cd04468
86 156 71 2.81585E-31 –
Gene3D
G3DSA:2.40.50.140
86 159 74 2.6E-34 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003746
Molecular function Translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
Subterm of
GO:0043022
Molecular function Ribosome binding Interacting selectively and non-covalently with any part of a ribosome.
Subterm of
GO:0045901
Biological process Positive regulation of translational elongation Any process that activates or increases the frequency, rate or extent of translational elongation.
Subterm of
Positively regulates
GO:0045905
Biological process Positive regulation of translational termination Any process that activates or increases the frequency, rate or extent of translational termination.
Subterm of
Positively regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0252100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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