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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011991
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 324 results. Now displaying 5 of 7 with 50 rows per page. This search has taken 5.789s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1549970.1
n.a. PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Cicer arietinum] gi|502162030|ref|XP_004512366.1| chr2 24460880 24470970 +
2 domain predictions
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Lj2g3v1643230.1
n.a. PREDICTED: Werner syndrome ATP-dependent helicase homolog [Glycine max] gi|356569961|ref|XP_003553162.1| chr2 25456755 25470290 +
3 domain predictions
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Lj2g3v1670850.1
n.a. PREDICTED: la-related protein-like [Cicer arietinum] gi|502161463|ref|XP_004512173.1| chr2 25973848 25977868 +
3 domain predictions
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Lj2g3v1705470.1
n.a. PREDICTED: histone H1-like [Cicer arietinum] gi|502161323|ref|XP_004512122.1| chr2 26332007 26333081 +
3 domain predictions
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Lj2g3v1863520.1
n.a. heat shock factor [Glycine max] gi|359807065|ref|NP_001241597.1| chr2 27879039 27880780 -
3 domain predictions
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Lj2g3v1968560.1
n.a. n.a. chr2 28727895 28732300 -
3 domain predictions
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Lj2g3v1968560.2
n.a. PREDICTED: telomere repeat-binding factor 2-like isoform X1 [Cicer arietinum] gi|502160644|ref|XP_004511827.1| chr2 28727895 28732300 -
3 domain predictions
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Lj2g3v2017420.1
n.a. PREDICTED: heat stress transcription factor B-2b-like [Glycine max] gi|356539790|ref|XP_003538376.1| chr2 30826937 30829471 -
3 domain predictions
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Lj2g3v2051220.1
n.a. PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi|502159864|ref|XP_004511556.1| chr2 31090054 31092660 -
2 domain predictions
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Lj2g3v2051220.2
n.a. PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi|502159864|ref|XP_004511556.1| chr2 31091258 31092660 -
2 domain predictions
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Lj2g3v2376960.2
n.a. PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like [Glycine max] gi|356577865|ref|XP_003557042.1| chr2 34030458 34031814 +
3 domain predictions
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Lj2g3v2378040.1
n.a. PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cicer arietinum] gi|502096315|ref|XP_004490696.1| chr2 34060621 34061679 +
3 domain predictions
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Lj2g3v2378050.1
n.a. PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like [Glycine max] gi|356577865|ref|XP_003557042.1| chr2 34060621 34062584 +
3 domain predictions
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Lj2g3v2560000.1
n.a. high mobility group protein [Canavalia gladiata] gi|1181589|dbj|BAA11766.1| chr2 35272421 35273630 -
3 domain predictions
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Lj2g3v2986050.2
n.a. PREDICTED: la-related protein 1-like [Glycine max] gi|356554253|ref|XP_003545463.1| chr2 38594406 38602395 -
3 domain predictions
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Lj2g3v2986050.3
n.a. PREDICTED: la-related protein 1-like [Glycine max] gi|356554253|ref|XP_003545463.1| chr2 38594406 38602395 -
3 domain predictions
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Lj2g3v3019660.1
n.a. PREDICTED: heat stress transcription factor B-4 [Glycine max] gi|356499299|ref|XP_003518479.1| chr2 38982684 38984832 -
3 domain predictions
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Lj2g3v3319080.1
n.a. Regulatory protein recX [Medicago truncatula] gi|357495195|ref|XP_003617886.1| chr2 42012007 42017049 -
2 domain predictions
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Lj2g3v3339490.1
n.a. Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|357495473|ref|XP_003618025.1| chr2 42739175 42741647 +
3 domain predictions
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Lj3g3v0323300.1
n.a. Leucine-rich repeat; Leucine-rich [Medicago truncatula] gi|87162712|gb|ABD28507.1| chr3 2433133 2434279 -
2 domain predictions
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Lj3g3v0323560.1
n.a. MYB transcription factor MYB107 [Glycine max] gi|351722098|ref|NP_001237744.1| chr3 2553361 2562596 -
3 domain predictions
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Lj3g3v0423910.1
n.a. PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Glycine max] gi|356557333|ref|XP_003546971.1| chr3 3723902 3727146 +
2 domain predictions
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Lj3g3v0429250.1
n.a. TMV resistance protein N-like [Glycine max] gi|359806248|ref|NP_001241468.1| chr3 4264185 4271632 -
2 domain predictions
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Lj3g3v0464890.1
n.a. NBS-containing resistance-like protein [Medicago truncatula] gi|357469529|ref|XP_003605049.1| chr3 5385005 5392901 -
2 domain predictions
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Lj3g3v0740490.1
n.a. TMV resistance protein N [Medicago truncatula] gi|357513283|ref|XP_003626930.1| chr3 8470026 8474354 +
2 domain predictions
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Lj3g3v0740490.2
n.a. PREDICTED: TMV resistance protein N-like isoform X1 [Cicer arietinum] gi|502155881|ref|XP_004510225.1| chr3 8470026 8474354 +
2 domain predictions
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Lj3g3v0740500.1
n.a. TMV resistance protein N [Medicago truncatula] gi|357513283|ref|XP_003626930.1| chr3 8470081 8474548 +
2 domain predictions
 –
Lj3g3v0743560.1
n.a. PREDICTED: TMV resistance protein N-like [Cicer arietinum] gi|502155879|ref|XP_004510224.1| chr3 8507651 8515414 -
2 domain predictions
 –
Lj3g3v0743570.1
n.a. n.a. chr3 8508041 8515414 +
2 domain predictions
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Lj3g3v0744620.1
n.a. PREDICTED: TMV resistance protein N-like [Cicer arietinum] gi|502155879|ref|XP_004510224.1| chr3 8533343 8535536 +
2 domain predictions
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Lj3g3v0824880.2
n.a. RNA polymerase sigma factor [Medicago truncatula] gi|357458317|ref|XP_003599439.1| chr3 10309802 10313683 +
2 domain predictions
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Lj3g3v0850580.1
n.a. La-related protein [Medicago truncatula] gi|357447339|ref|XP_003593945.1| chr3 10667843 10668220 +
3 domain predictions
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Lj3g3v0883710.1
n.a. PREDICTED: sister chromatid cohesion 1 protein 3-like [Cicer arietinum] gi|502174620|ref|XP_004515558.1| chr3 10749774 10753951 +
2 domain predictions
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Lj3g3v0966400.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] gi|356556951|ref|XP_003546783.1| chr3 13122548 13130884 +
2 domain predictions
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Lj3g3v1048920.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356506581|ref|XP_003522058.1| chr3 13854639 13878653 +
2 domain predictions
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Lj3g3v1048920.2
n.a. TMV resistance protein N [Medicago truncatula] gi|357509247|ref|XP_003624912.1| chr3 13854639 13890166 +
2 domain predictions
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Lj3g3v1048920.3
n.a. TMV resistance protein N [Medicago truncatula] gi|357509247|ref|XP_003624912.1| chr3 13855063 13877954 +
2 domain predictions
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Lj3g3v1101570.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356545124|ref|XP_003540995.1| chr3 14669025 14672363 +
2 domain predictions
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Lj3g3v1249990.1
n.a. PREDICTED: lysine-specific histone demethylase 1 homolog 2-like [Glycine max] gi|356517186|ref|XP_003527270.1| chr3 16204138 16208700 -
2 domain predictions
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Lj3g3v1249990.3
n.a. PREDICTED: lysine-specific histone demethylase 1 homolog 2-like [Glycine max] gi|356517186|ref|XP_003527270.1| chr3 16206856 16208700 -
2 domain predictions
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Lj3g3v1376940.1
n.a. Tir-nbs-lrr resistance protein [Medicago truncatula] gi|357474671|ref|XP_003607620.1| chr3 17524208 17529557 -
2 domain predictions
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Lj3g3v1381500.2
n.a. Tir-nbs-lrr resistance protein [Medicago truncatula] gi|357468519|ref|XP_003604544.1| chr3 17691002 17695459 -
2 domain predictions
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Lj3g3v1531170.2
n.a. PREDICTED: DDRGK domain-containing protein 1-like [Vitis vinifera] gi|359494005|ref|XP_003634707.1| chr3 19647786 19651878 +
2 domain predictions
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Lj3g3v1556600.2
n.a. TMV resistance protein N-like [Glycine max] gi|359806248|ref|NP_001241468.1| chr3 19840722 19845208 -
2 domain predictions
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Lj3g3v1567740.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356506581|ref|XP_003522058.1| chr3 19883317 19903928 +
2 domain predictions
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Lj3g3v1567740.3
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356506581|ref|XP_003522058.1| chr3 19894323 19903928 +
2 domain predictions
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Lj3g3v2645580.1
n.a. PREDICTED: COP9 signalosome complex subunit 2-like [Glycine max] gi|356503363|ref|XP_003520479.1| chr3 32275962 32278364 -
3 domain predictions
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Lj3g3v2665420.1
n.a. Nbs-lrr resistance protein [Medicago truncatula] gi|357513731|ref|XP_003627154.1| chr3 32525785 32531307 +
2 domain predictions
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Lj3g3v2665430.1
n.a. Nbs-lrr resistance protein [Medicago truncatula] gi|357513731|ref|XP_003627154.1| chr3 32531498 32543438 +
2 domain predictions
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Lj3g3v2666490.1
n.a. Nbs-lrr resistance protein [Medicago truncatula] gi|357513731|ref|XP_003627154.1| chr3 32561159 32568241 -
2 domain predictions
 –