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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0966400 |
| Transcript ID | Lj3g3v0966400.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] gi|356556951|ref|XP_003546783.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 7 | 2185 | 2179 | 0 | – | |
| MobiDBLite | 24 | 108 | 85 | – | – | |
| Coils | 219 | 239 | 21 | – | – | |
| MobiDBLite | 221 | 266 | 46 | – | – | |
| Coils | 355 | 375 | 21 | – | – | |
| Coils | 378 | 409 | 32 | – | – | |
| MobiDBLite | 389 | 441 | 53 | – | – | |
| SUPERFAMILY | 466 | 706 | 241 | 5.63E-42 | ||
| Gene3D | 512 | 694 | 183 | 9.30E-45 | ||
| SMART | 516 | 729 | 214 | 7.00E-31 | ||
| Pfam | 522 | 698 | 177 | 9.00E-27 | ||
| ProSiteProfiles | 529 | 713 | 185 | 22.204 | ||
| SMART | 534 | 717 | 184 | 0.0011 | ||
| CDD | 537 | 695 | 159 | 1.01E-20 | – | |
| SUPERFAMILY | 716 | 928 | 213 | 7.14E-47 | ||
| CDD | 724 | 898 | 175 | 6.42E-13 | – | |
| ProSiteProfiles | 739 | 941 | 203 | 11.575 | ||
| Gene3D | 756 | 939 | 184 | 2.00E-26 | ||
| Pfam | 758 | 898 | 141 | 1.00E-07 | ||
| SMART | 812 | 900 | 89 | 2.00E-18 | ||
| SUPERFAMILY | 928 | 1033 | 106 | 4.90E-08 | ||
| SMART | 1021 | 1326 | 306 | 2.50E-124 | ||
| Pfam | 1022 | 1324 | 303 | 6.50E-92 | ||
| SUPERFAMILY | 1049 | 1222 | 174 | 1.94E-49 | – | |
| Gene3D | 1051 | 1163 | 113 | 3.90E-37 | – | |
| SUPERFAMILY | 1252 | 1553 | 302 | 2.36E-50 | ||
| SMART | 1363 | 1569 | 207 | 3.00E-24 | ||
| Gene3D | 1364 | 1567 | 204 | 6.60E-40 | ||
| Pfam | 1369 | 1537 | 169 | 8.40E-25 | ||
| ProSiteProfiles | 1376 | 1553 | 178 | 21.147 | ||
| SMART | 1381 | 1574 | 194 | 1.2 | ||
| CDD | 1384 | 1532 | 149 | 1.83E-18 | – | |
| SUPERFAMILY | 1555 | 1765 | 211 | 4.28E-35 | ||
| Gene3D | 1588 | 1762 | 175 | 2.80E-12 | ||
| ProSiteProfiles | 1614 | 1794 | 181 | 7.601 | ||
| SMART | 1649 | 1737 | 89 | 0.0078 | ||
| SUPERFAMILY | 1765 | 1866 | 102 | 5.71E-09 | ||
| SMART | 1854 | 2173 | 320 | 3.20E-107 | ||
| Pfam | 1854 | 2171 | 318 | 5.60E-75 | ||
| PANTHER | 1865 | 2178 | 314 | 1.40E-73 | – | |
| SUPERFAMILY | 1883 | 2060 | 178 | 3.14E-53 | – | |
| Gene3D | 1883 | 1997 | 115 | 1.20E-36 | – | |
| Gene3D | 1999 | 2059 | 61 | 9.80E-27 | – | |
| Gene3D | 2060 | 2181 | 122 | 1.20E-40 | ||
| SUPERFAMILY | 2061 | 2177 | 117 | 5.60E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj3g3v0966400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0966400.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.