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Lj2g3v1968560.1

Overview

Field Value
Gene ID Lj2g3v1968560
Transcript ID Lj2g3v1968560.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51294
1 61 61 13.622
IPR017930
PANTHER
PTHR21717:SF27
1 169 169 4.80E-105 –
PANTHER
PTHR21717
1 169 169 4.80E-105 –
SUPERFAMILY
SSF46689
2 70 69 6.63E-15
IPR009057
SMART
SM00717
4 59 56 3.20E-05
IPR001005
Gene3D
G3DSA:1.10.10.60
5 56 52 1.50E-12
IPR009057
Pfam
PF00249
5 55 51 3.00E-07
IPR001005
CDD
cd11660
6 57 52 3.78E-16 –
SMART
SM00526
102 177 76 5.50E-14
IPR005818
SUPERFAMILY
SSF46785
113 191 79 3.05E-17
IPR011991
ProSiteProfiles
PS51504
114 182 69 24.485
IPR005818
Gene3D
G3DSA:1.10.10.10
116 184 69 9.60E-17
IPR011991
Pfam
PF00538
119 176 58 1.10E-11
IPR005818
CDD
cd00073
120 184 65 8.40E-11 –
Coils
Coil
240 274 35 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006334
Biological process Nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Subterm of
Part of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj2g3v1968560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1968560.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.