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Lj0g3v0175019.1

Overview

Field Value
Gene ID Lj0g3v0175019
Transcript ID Lj0g3v0175019.1
Lotus japonicus genome version MG20 v3.0
Description Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508783988|gb|EOY31244.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22904
4 165 162 2.90E-267 –
PANTHER
PTHR22904:SF367
4 165 162 2.90E-267 –
Gene3D
G3DSA:1.25.40.10
28 138 111 6.40E-28
IPR011990
SMART
SM00028
28 61 34 1.8
IPR019734
ProSiteProfiles
PS50293
28 135 108 18.625
IPR013026
ProSiteProfiles
PS50005
28 61 34 8.85
IPR019734
SUPERFAMILY
SSF48452
29 141 113 1.37E-25
IPR011990
SMART
SM00028
66 101 36 36
IPR019734
SMART
SM00028
102 135 34 0.01
IPR019734
ProSiteProfiles
PS50005
102 135 34 8.231
IPR019734
MobiDBLite
mobidb-lite
164 201 38 – –
Gene3D
G3DSA:1.25.40.10
239 240 2 6.40E-28
IPR011990
Gene3D
G3DSA:3.10.20.240
257 343 87 1.40E-11 –
ProSiteProfiles
PS51745
262 339 78 12.331
IPR000270
SMART
SM00666
262 339 78 3.70E-09
IPR000270
Pfam
PF00564
264 337 74 1.70E-11
IPR000270
SUPERFAMILY
SSF54277
265 345 81 1.15E-13 –
CDD
cd05992
266 336 71 3.93E-07 –
PANTHER
PTHR22904:SF367
327 647 321 2.90E-267 –
PANTHER
PTHR22904
327 647 321 2.90E-267 –
Gene3D
G3DSA:1.25.40.10
479 506 28 6.40E-28
IPR011990
Coils
Coil
546 566 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj0g3v0175019.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0175019.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.