Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0075400 |
| Transcript ID | LotjaGi6g1v0075400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphoinositide phospholipase C; TAIR: AT2G40116.1 Phosphoinositide-specific phospholipase C family protein; Swiss-Prot: sp|Q8GV43|PLCD6_ARATH Phosphoinositide phospholipase C 6; TrEMBL-Plants: tr|K7LRR0|K7LRR0_SOYBN Phosphoinositide phospholipase C; Found in the gene: LotjaGi6g1v0075400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:14248616..14254581) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAACAAAAATGGAAAATGATTGTTATTGTGGTGGTTGAAGACAATAACTATAAACAGAGTCACCATTGGTTCCGCTT CAACCACACACACCATCACTTTCCTTCTTCTTCTTCTTCTCTCTGCAACACATTCTCATCCATTCATTTCAATTTCAACC GCCACCATTGTTTCTCTTTTAATACCTCATTCACTGTAACAAACAAACCTCTTCATCAGTTTCGCAATGGCCACTACACA CAACTACTCGGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCGCCGAACCGGGTCCACCGCCCGACGTCCAACGAGCTT TCTCCGATTTCGCCGCCGGCGAATCCTTCATGTCCGCCGATCACCTCCTCCGTTTCCTGGTCGAGCACCAGGGCGAGGTT GGTTGCGAGCCATCCGATGTCCAACGGATCCTCTCGGAATTGCCTGAACTGCATCACGAAACTGTGGATTCACGTGGACT CACCCTTCGCCAGTTCTTCCATTTCTTGTTCCTCCATGATTTCAATGGCCCCTTGAAATCCCAGGTTAATACACACACTC TCTCCCTCTTTCCTTGTTTGGATCAATTTTGATTTAACTCAGGTAGTAGTAATGATGATTGTCTAAAATTTTGTTGAACT TTGTTGATAGATTTGATAAAATTAAAAAAAAAAACTATAATGATTTTGACATTAGTTTTGTTATTTATGGTTATAATTTT AATATACATGGAGATTTTTGTGAATTATGTTTATACTTATAGACTTGGAGATAGTTTGATTCGTAGAAGCCGCACTCTTG GGGGACCTTTGGTCTTCACCATACCCGGGTCAGAATTACGAGAGCAATTTGACACGTACAAAAAAATTTTACTTATAGAC TTGGATTTGGTTCTCTGAGAGAGTAACTCTATAGGCTAAAGTAATTCATCACTATAATTGATTGAGAAGGGGTGGGGTGG GGTGGGTAGCTCACATGGTTGAGCTAAGGTAATTGTAGGTGAAGGGTCAGGGTTCGAACTCTGAGGAGGGATAATCTATA CTAATTTACTAACAACTAACATTTGCCTATAAAAAAAACTGTTATTGATTGAGAAATTAGCGGTTGTGGTTTATTACATT AAATGCTTTGTCTCTTCACAAGATTAATTGAAATATCTTACATTCATGGACTTGATCAACCAACTCTTGACAATGGTATT GCATTGCTGTCAAAAAGGAATAACTGGGTTCTCAGGTGCTTGCAATGGGATGCTTTCGTTGACAAATCCCATCTTGTTTT TGGTGGGTAGAATCATATTTATTGAGCAAGACCAGCATTGGCAAGTAGAGTTTGAAAGTGCAAGCGAAACTAAGATCATA GATGGGTTCTCATTCGGGTGTATGTAAAAGGACATGGAGGAGCTCTGGTATAAGGATAGTGGTTGGCTACGGTGGTAGGT TTTTCAAAGTTCTCTTGAGAGAGCTCTGATACCATAATGGATTTGATAAGAGGCAAAAAATGAGTTTGCTTTTAATTGAA CTGATGATTGTACAAGAGAAGTTAGTGCAATGTGAACTGCAAAAAACTTTCATAACTCACTGATCTATCAACAACTAACT AAACTAATTAACTTACATAAATAACCCAACTTCCTTACCGTTAATTTGTCCTGTGTATTACTTCTAGTCCTCAACTAAGT GCTGGGCGGTTAGGATTAGCTTTTTGCTTATGGGAGTGTTTAAAGTTATATTTTACTTGGTTCTGGTTCATAACTAAGGA AAACGTCCTTACCCCTTATAATATACATGCGTTCAAGTAGAAGTTAGATGAGTGACCTGAAATCATTCAAGTGTTGAAGT TCATTTCAACTTATGCAAGAAGTTTTTGTTTAAAAGACTCATAATCGTTGCTAATAATTTGATTATTTTTCCCATAAAAT ACTTGTTGAGAAGATTATCTAAGCTATCTCTTTTTCGAGTTCAAGATTAGTGGTGTCTTGTGTGTTCATTTATTTTTTGG CAAATTTTGTAGTGCCTTATGCTTCTGCATATATATGCTGTCTTCCTTTTTAATGGAGCGTACTTTTGATGCATGTTTTC TAAATGAAAGCAAACAAGCAATGGTTTATGTCTCCTTTTAACAATACAAATGATGTCCTATTTCAGGTACATCATGATAT GAATGCTCCATTATCACATTATTTTATATTTACTGGCCACAATTCCTATCTTACTGGGAATCAACTGAGTAGTGACTGCA GTGATGTGCCAATCATAGAGGCTTTGCAACGAGGTGTGCGAGTAATTGAACTAGATTTATGGCCAAATTCAACTGAAGAT GACATCGATGTACTTCATGGAAGGTGCTAGCTGATCCCTGGTTCAATCTCATAACATAGGACGATTTTCCTTTTCATATC TTTTGTGAGGCACTCTCTATGAAACCTTATAAAACCACTTATGCACATTTTTCTGAATTCTTGCAGGACTCTTACCACTC CCGTCTCACTTCTTCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTT GAAGATCACCTTACTCCAGATCTTCAAGCTAAAGTTGCAGAGGTAGGTCTCCCTTTTACTTCCTACATCAAGGATTTATT TCAGGTCCTACTTTGCTAGGTGTTGAATGTGAATTTCCATCTTATTATTTATGTGTAGATGGTAACTCAAATATTTGGAG AATTGCTTTACTATCCTGAGGCAGATTCTCTGATGGAATTCCCCACACCAGAATCATTGAAAGGTAGAATTCTTATATCA ACCAAACCACCAAAAGAATATCTTGAATCCAAGCAATGTGATGACAAGGACAATGAAAAGGAATTAGCTGACAAAGAATC ATCTTCCCCAGACCTTACTGATGAACTAGAAACTGATGACAAGGTGAGTGTAGAGCCGGAAATTTATTTGCATATTTTCT TCCACATCGAAAAAATTTACATCATGAACGTTACTATTGCCTTTTACCTAAATCTTAACTACTTGCAAGTGGCATTTGAT TTATTTTATTTGTTCTGCATGTTAATGTCATCTTTTCCGTTCTAACTGGATACCATATAAGCGCTTGATTACAATCTAGT GCCATTTGATTTATTTGATAAGCTGACAAAGAATCATCTTCCCCGGACCTGCAGTGTGCACCTGAATATAAACGCTTGAT TACAATCCGTGCTGGAAAACCGAAGGGTGATGTACAGGATGAATTAAAAGTTGTTGGTCAAGTTAGGCGCTTGAGCTTGA GCGAACATGCACTTGAAAAGTGTTCCGAGTCTTACGGAGATGATATTGTTAGGTAGTTTTCTATTTGCAAAACTTGGTAG GGGTAAATGCAAAAGATCTTTAGTATTTTAATAGCTTAAAAACCTTCAAACTATAAAACATAATACCATTTTCCAGGTTT ACCCAGACGAATATTCTCAGAGTGTATCCAAAGGGAACCCGCCTCGACTCCTCAAATTACAAGCCACACATAGGGTGGAT GTATGGAGCTCAAATGGTTGCATTTAACATGCAGGTTTGGGACTCATCACCACGGCTGTTTTGAAAATAAATTGTTTATT TTTTTTTAATTTTAATTTTTTTTTCAGTCTTCATGCATTCTACTTAATATGTTTTGGTGCTTATTTTTTGGGGTACAAGT ACAACCATTAGTTCTTTTTCCTTTTGTTTATGTGGACTTTCAAGCAGGAAACTAGTGACTCAACATTACATCGTTGGACT ATGCTTTGTTGTGAAGCAATGTTGCATGCCTATTGAAACAGTATTTCAAAGTTGTGTGCGTCCATCTACATTTTTTCATT TGTTGCAAATGATCACTAGGACCAGTGACAATCACTGCTAATGCTATATTTCTTTCCTTCATCATCATGCATTTTCAATA TGAAGAATATCTTAGATAGTTTATTGTTGATAAATGATAGATATATATATTTGTGTTATACCCTTGATAGCTCTCGGGGT AGACCTCTTATCACAAAGGTTTACCAGAGGAGGGGTAAAGAGAGTGTGTAAGTCAGTTAGTGGTTAGAGGGGTTAGAATA ACTGTCTTCGAGTGAAGGGAAATTAAAGTTAGTATTCAAATGTATAAATAGAGGAACTGTTATTCAGTTAGTTAGTTAGT TCATTCTAGTTGTTCGTTGTTGGGAGAGAGTGAGTCTCTCGAAATACTCACCTGTATCTGTTTCTCTGATTCCTATTTGG GAATTAGGGTTCCTAATCAATAAAGTTTCCCCAATTCATTTCTCCAATCTATCAATTCTGCTTTCAAGTTATCATTTTAA CTTTTTTATTTATTTCAGTTCGTACTTTGATAATTACATGATAGTGATGGAGGTTGGGCAATTCAAAAGGCAGTTATCTA AAATTCGTTCACAAAGCACTCAATCTTCATCAACGATACTGACCTTCTAATGTGTAGTTTTCTTTATTAGGGGTATGGCA AATCACTCTGGTTCATGCAAGGGATGTTTAGAGCAAATGGAGGGTGTGGTTATGTGAAAAAGCCTGACTTTCTAATTGAA AAAGGTCCACGTAATGAGGTTTTTGATCCTGAAAGAACATTGCCAGTGATGAAAACATTAACGGTGAGATACTATTTTCT AAAGGGAAATCAATTAGTTTGATGGCCTTTCTGAAATTAAGTCTCTGTCTGCATGTAGGTGAAAGTCTATATGGGAAGTG GTTGGTGCTCAGATTTCAGCCAAACACACTTCGATACGTACTCACCACCAGATTTATACGTAAAGGTGCGTTGGATAATG ATGTATGGCATATCAGGAACACTAATCTTCCTGTGGCATAGTTAAACATTTGTTGGTATTTAGAGATTCTTTTCAATATG CTGCAACATTATTTACTTGGCTGATTCTTCATTGTCAAAAATCCTTTAACTGTTTTTAACTGTCCCTTTCAACTTGCATT TCATTCTATTTAAGGGATCAGCAATTTTTATATGATCACAGTATTTATGGGAACAACCAAGATACGTTAAAATAATAATA GAAAAGGCATCAAAACATGGTAAAGTTATTCTAGTATTACTTTAATATTTTGATTAGCTCTATTAAATAGATATACAAAT ACAATCACGCAAGAATTATTCTAAAGGGGGTTTATGTACTTTTGATCAGTCTATAGTTTGACATTGTACAAGTGTGTTGT TGATATTTGCTGGAATCTGAAAAAGATGACACAATAAAAGTTATTATACTTGTCCCATGCATTTAATCAATTCATATAAC AGGTTTGTATTATTGGAGTCCCTGCTGATATAGCCAAGAAGAAAACAGAGGAAATTTCAAATAATTGGTTTCCTGTGTGG AATGAGGAGTTTGATTTCCCTTTGACTGTTCCAGAGCTGGCTCTGCTCCGTATAGATGTTCGAGAGCATGATAGCCATGG AAAAGATGAGTTAGGTGGACAGACGTGTTTGCCTGTCTCGGAGCTGAAATCAGGATTCCGATCAGTCCCTCTGTATGATG AAAAGGGCGACCCATTTAAATCTGTGAAGCTTTTAATGCGGTTTCGGTTTACATGAATTATAGAAATCTTCCATAGAAGT ATCATATGATCATATCAATGGATGAATGAGACTAGATAATATATTAAGAGCCCGTTTGAATGCGAATCAAATAACACTCA TTGGAGCCTTGCTTATCTAGTGTTGTTTCTAGTAGAAAAGCTCCAATAAGTGTTATTGGTCCGTTGTTCGTATCAAAGGT GCTCTGATTCTTACCACCATACTTATATCATAAGTGAACTGTCATATTAAGGAGTGAGTCTGTTTACACGGATTTTTGGT AAACAAATATCCTCTTAGTTCGACTAAAGGAAGTTTAGATTCGGGGTCCTTTTGAGAAAACGCTTTGCCAAAGTGTAGTG TGTGAACGAGTGTATTCTCGACAACAATAAACAACTCAAACGAAAC
CDS sequence (LotjaGi6g1v0075400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACTACACACAACTACTCGGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCGCCGAACCGGGTCCACCGCCCGA CGTCCAACGAGCTTTCTCCGATTTCGCCGCCGGCGAATCCTTCATGTCCGCCGATCACCTCCTCCGTTTCCTGGTCGAGC ACCAGGGCGAGGTTGGTTGCGAGCCATCCGATGTCCAACGGATCCTCTCGGAATTGCCTGAACTGCATCACGAAACTGTG GATTCACGTGGACTCACCCTTCGCCAGTTCTTCCATTTCTTGTTCCTCCATGATTTCAATGGCCCCTTGAAATCCCAGGT ACATCATGATATGAATGCTCCATTATCACATTATTTTATATTTACTGGCCACAATTCCTATCTTACTGGGAATCAACTGA GTAGTGACTGCAGTGATGTGCCAATCATAGAGGCTTTGCAACGAGGTGTGCGAGTAATTGAACTAGATTTATGGCCAAAT TCAACTGAAGATGACATCGATGTACTTCATGGAAGGACTCTTACCACTCCCGTCTCACTTCTTCAATGTTTGAAGTCCAT AAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTTGAAGATCACCTTACTCCAGATCTTCAAGCTA AAGTTGCAGAGATGGTAACTCAAATATTTGGAGAATTGCTTTACTATCCTGAGGCAGATTCTCTGATGGAATTCCCCACA CCAGAATCATTGAAAGGTAGAATTCTTATATCAACCAAACCACCAAAAGAATATCTTGAATCCAAGCAATGTGATGACAA GGACAATGAAAAGGAATTAGCTGACAAAGAATCATCTTCCCCAGACCTTACTGATGAACTAGAAACTGATGACAAGTGTG CACCTGAATATAAACGCTTGATTACAATCCGTGCTGGAAAACCGAAGGGTGATGTACAGGATGAATTAAAAGTTGTTGGT CAAGTTAGGCGCTTGAGCTTGAGCGAACATGCACTTGAAAAGTGTTCCGAGTCTTACGGAGATGATATTGTTAGGTTTAC CCAGACGAATATTCTCAGAGTGTATCCAAAGGGAACCCGCCTCGACTCCTCAAATTACAAGCCACACATAGGGTGGATGT ATGGAGCTCAAATGGTTGCATTTAACATGCAGGGGTATGGCAAATCACTCTGGTTCATGCAAGGGATGTTTAGAGCAAAT GGAGGGTGTGGTTATGTGAAAAAGCCTGACTTTCTAATTGAAAAAGGTCCACGTAATGAGGTTTTTGATCCTGAAAGAAC ATTGCCAGTGATGAAAACATTAACGGTGAAAGTCTATATGGGAAGTGGTTGGTGCTCAGATTTCAGCCAAACACACTTCG ATACGTACTCACCACCAGATTTATACGTAAAGGTTTGTATTATTGGAGTCCCTGCTGATATAGCCAAGAAGAAAACAGAG GAAATTTCAAATAATTGGTTTCCTGTGTGGAATGAGGAGTTTGATTTCCCTTTGACTGTTCCAGAGCTGGCTCTGCTCCG TATAGATGTTCGAGAGCATGATAGCCATGGAAAAGATGAGTTAGGTGGACAGACGTGTTTGCCTGTCTCGGAGCTGAAAT CAGGATTCCGATCAGTCCCTCTGTATGATGAAAAGGGCGACCCATTTAAATCTGTGAAGCTTTTAATGCGGTTTCGGTTT ACATGA
Protein sequence (LotjaGi6g1v0075400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTHNYSVFSCFNRKFTVAEPGPPPDVQRAFSDFAAGESFMSADHLLRFLVEHQGEVGCEPSDVQRILSELPELHHETV DSRGLTLRQFFHFLFLHDFNGPLKSQVHHDMNAPLSHYFIFTGHNSYLTGNQLSSDCSDVPIIEALQRGVRVIELDLWPN STEDDIDVLHGRTLTTPVSLLQCLKSIKEYAFVKSHYPLIITFEDHLTPDLQAKVAEMVTQIFGELLYYPEADSLMEFPT PESLKGRILISTKPPKEYLESKQCDDKDNEKELADKESSSPDLTDELETDDKCAPEYKRLITIRAGKPKGDVQDELKVVG QVRRLSLSEHALEKCSESYGDDIVRFTQTNILRVYPKGTRLDSSNYKPHIGWMYGAQMVAFNMQGYGKSLWFMQGMFRAN GGCGYVKKPDFLIEKGPRNEVFDPERTLPVMKTLTVKVYMGSGWCSDFSQTHFDTYSPPDLYVKVCIIGVPADIAKKKTE EISNNWFPVWNEEFDFPLTVPELALLRIDVREHDSHGKDELGGQTCLPVSELKSGFRSVPLYDEKGDPFKSVKLLMRFRF T
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 560 | 555 | 1.8E-287 | ||
| PANTHER | 6 | 560 | 555 | 1.8E-287 | – | |
| SUPERFAMILY | 7 | 111 | 105 | 1.02E-7 | ||
| Gene3D | 105 | 425 | 321 | 2.2E-87 | ||
| CDD | 108 | 400 | 293 | 1.78969E-126 | – | |
| SUPERFAMILY | 109 | 414 | 306 | 3.77E-111 | ||
| SMART | 109 | 253 | 145 | 3.2E-72 | ||
| ProSiteProfiles | 109 | 253 | 145 | 42.089 | – | |
| Pfam | 111 | 253 | 143 | 7.4E-50 | ||
| PRINTS | 114 | 132 | 19 | 1.9E-45 | ||
| PRINTS | 140 | 160 | 21 | 1.9E-45 | ||
| PRINTS | 237 | 254 | 18 | 1.9E-45 | ||
| MobiDBLite | 259 | 289 | 31 | - | – | |
| SMART | 297 | 413 | 117 | 5.5E-60 | ||
| Pfam | 325 | 411 | 87 | 6.0E-27 | ||
| ProSiteProfiles | 326 | 412 | 87 | 36.007 | ||
| PRINTS | 351 | 372 | 22 | 1.9E-45 | ||
| PRINTS | 372 | 390 | 19 | 1.9E-45 | ||
| SUPERFAMILY | 429 | 560 | 132 | 8.87E-27 | – | |
| Gene3D | 430 | 561 | 132 | 1.7E-31 | ||
| ProSiteProfiles | 430 | 526 | 97 | 13.594 | ||
| CDD | 432 | 561 | 130 | 1.42668E-41 | – | |
| Pfam | 433 | 535 | 103 | 3.3E-13 | ||
| SMART | 433 | 541 | 109 | 6.6E-16 | ||
| PRINTS | 527 | 537 | 11 | 1.9E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphatidylinositol phospholipase C activity | Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1,2-diacylglycerol + 1D-myo-inositol 1,4,5-trisphosphate + H(+). | ||
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | Phosphoric diester hydrolase activity | Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. | ||
| Biological process | Intracellular signal transduction | The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. |
Expression pattern of LotjaGi6g1v0075400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…