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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0077700 |
| Transcript ID | LotjaGi1g1v0077700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphoinositide phospholipase C; TAIR: AT2G40116.1 Phosphoinositide-specific phospholipase C family protein; Swiss-Prot: sp|Q8GV43|PLCD6_ARATH Phosphoinositide phospholipase C 6; TrEMBL-Plants: tr|G7KH09|G7KH09_MEDTR Phosphoinositide phospholipase C; Found in the gene: LotjaGi1g1v0077700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11219356..11221865) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATGCTCCGTTGTCACATTATTTCATATATACAGGGCACAATTCCTATCTGACCGGGAATCAGCTGAGCAGCGGGTG CAGTGATGTGCCTATCATGAAAGCTTTGCAAGGAGGTGTGCGAGTAATTGAACTTGATTTATGGCCAAATTCAACGAAAG ATGATATCATTGTACTTCATGGAAGGTGCTGACCCAGAGTTCAATCTTGTGTAGCCGGATAACAATTTTCTTTTTATGTT TTCTGACCTTTCAGTTTTTTAAGATATTGATGTTGCAACTTTATATATCCATTTGCTACAGAACATTTTTGTGAAATATT GCAGGACACTTACCACTCCTGTCTCACTCATACAATGTTTGAAGTCCATAAAAGAGCATGCTTTTGTTAAATCTCGATAC CCAGTCATTATAACTCTAGAAGATCATCTTACACCGGATCTTCAAGCTAAAGTTGCAGAGGTAAGCTTCCATCATCACTT CCCCTCTACTTCAAGCCCCTATTTTTTTGTGTATTGAATGCAAGGTTAAAATCTTCTTATTTGTAGATGACAACTCAAAT ATTTGGAGATATGCTCTATTATCCTCATACAGATCTTCTGACGGAATTTCCCACACCAGAATCACTGAAAGATCGAATTC TTATCTCAACAAAACCACCAAAAGAATATCTTGACGCCAAGCAGTTTAAGGACAGTGACACTGAAAGGGATTCGGCGGAA GAAGGATCATCATCGCCTGGCCTTATCAATGAAGTTGAAGCTGATAACAGGGTGAAGAAAGAAACATATTCTTTTATCAA TTTTGATTCCATTTTTATAAGCTCTGGATGCTTATGTAATCTTCCTCCCTGACTTGATAGTTCAATGGAAGTGATCAATA TGAGGAAGCTATCAATGCTCGTGATAAAAAACCCGACCAGCAGGGTGCACCTGAGTACAAACGTTTGATTACAATCAATG CTGGGAAGCCGAAGGGCAATGTAAGGGACCATCTAAAAATTGCTGGGGACGTCAAGCGTCTAAGCTTGAGCGAACAGGAA CTTGAGAAGGCTTCTGCCACTTATGGAGCCGATATTGTTAGGTATTTCGGTATTTCTCAAACATTCAAACCTACTTAGTA CGTAGTAGTGATAACTACAAATAATATAGTTGATAACCTTCCAGCTAAGATGGTTGCATTTTATGCTTGCAGGTTTACAC AGAAGAATATTCTCAGGGTGTATCCAAAGGGAACGCGTGTAACCTCTTCAAATTACAGGCCACATATAGGGTGGATGTAT GGAGCTCAGATGGTCGCATTTAACATGCAGGTCAGTCACTCATGACCAAGGCAGTTTTTCAAAATGAAAGGTTTTATGGA AAATAAGGACTGGATTTGCTGCCCTCAAAATATGGTGTAGTCAGCGAATCAGAACCATTGAATGAAGATCGGGCAGTCTA AACTAAATTGTGACAAATTAGAATTCAAACTTGAACTCCAAATCTGAGCAACCGATCTCCATTAAATGATTACAATTTGA TGACTTACCTGACTGAACCAAAACCAAATCCAGAAAGGAATCAAGCGTGGCCATATCTTCGGCTATTTTATTCGTGGAGC AAAATCTTAAATGCATATTGGACTAATATTTGTACGTTGATGTGGCCTCATTCATTTAATTCTATGCTATACATGAATTT AGTGGCAGAGCAACAATCTGTGTTAATGCTGTATTCATTTTCTTCATCATTATGTTCCATAGGAAAAAATTCTGATATGC TATAATTTATTGGCCCTGCTTTTTTGTTCAATGCATCCTTTGGTACTAGGATTTTAACATGTGTTTTTCTTTACCAGGGG CATGGAAAATCACTCTGGTACATGCAAGGGATGTTTAGAGCAAATGGAGGGTGTGGTTATGTGAAAAAACCTGCATTTCT GATGGAAAAAGGCCCGCATAATGAGGTTTTTGATCCTAAAAGAGTATTGCCTGTAAAGAAAACATTAAAGGTGAGATATT ATTTGAGTAGGAAATCAATTGGTTTGGTTACATCTTCTGAAATTCTCTCCTGTCCAGGTGAAAGTATATATGGGAAACGG GTGGAGCTCAGATTTCAGCAAAACACACTTTGATACGTTCTCTCCACCGGACTTTTACACAAAGGTGAGTTGGATAGTAT TGTTAATGTTCCAAGTTAGGATATTCTACATAGCTTTCAATCAATTTGTATTACAGGTTTATATTATTGGAGTACCAGCT GATAAATCCAAGAAGAAGACCAAGATAATTCAAGATAACTGGTTTCCCGTCTGGGACGAAGAGTTTGATTTTCCCTTAAC CGTTCCAGAACTAGCTTTGCTTCGGATTGAAGTTCGAGAGTATGATAAGCATGAAAAGGATGACTTTGGCGGCCAAACAT GTCTGCCGGTCTCTGAGCTAAGATCCGGGTTCCGGGCAGTCCCTCTATATGATCGAAAGGGAGAGAAATTAAAATCTGTA AAGCTTTTAATGCGGTTCCAGTTCGCATAA
CDS sequence (LotjaGi1g1v0077700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGCTCCGTTGTCACATTATTTCATATATACAGGGCACAATTCCTATCTGACCGGGAATCAGCTGAGCAGCGGGTG CAGTGATGTGCCTATCATGAAAGCTTTGCAAGGAGGTGTGCGAGTAATTGAACTTGATTTATGGCCAAATTCAACGAAAG ATGATATCATTGTACTTCATGGAAGGACACTTACCACTCCTGTCTCACTCATACAATGTTTGAAGTCCATAAAAGAGCAT GCTTTTGTTAAATCTCGATACCCAGTCATTATAACTCTAGAAGATCATCTTACACCGGATCTTCAAGCTAAAGTTGCAGA GATGACAACTCAAATATTTGGAGATATGCTCTATTATCCTCATACAGATCTTCTGACGGAATTTCCCACACCAGAATCAC TGAAAGATCGAATTCTTATCTCAACAAAACCACCAAAAGAATATCTTGACGCCAAGCAGTTTAAGGACAGTGACACTGAA AGGGATTCGGCGGAAGAAGGATCATCATCGCCTGGCCTTATCAATGAAGTTGAAGCTGATAACAGGTTCAATGGAAGTGA TCAATATGAGGAAGCTATCAATGCTCGTGATAAAAAACCCGACCAGCAGGGTGCACCTGAGTACAAACGTTTGATTACAA TCAATGCTGGGAAGCCGAAGGGCAATGTAAGGGACCATCTAAAAATTGCTGGGGACGTCAAGCGTCTAAGCTTGAGCGAA CAGGAACTTGAGAAGGCTTCTGCCACTTATGGAGCCGATATTGTTAGGTTTACACAGAAGAATATTCTCAGGGTGTATCC AAAGGGAACGCGTGTAACCTCTTCAAATTACAGGCCACATATAGGGTGGATGTATGGAGCTCAGATGGTCGCATTTAACA TGCAGGGGCATGGAAAATCACTCTGGTACATGCAAGGGATGTTTAGAGCAAATGGAGGGTGTGGTTATGTGAAAAAACCT GCATTTCTGATGGAAAAAGGCCCGCATAATGAGGTTTTTGATCCTAAAAGAGTATTGCCTGTAAAGAAAACATTAAAGGT GAAAGTATATATGGGAAACGGGTGGAGCTCAGATTTCAGCAAAACACACTTTGATACGTTCTCTCCACCGGACTTTTACA CAAAGGTGAGTTGGATAGTATTGTTAATGTTCCAAGTTAGGATATTCTACATAGCTTTCAATCAATTTGTATTACAGGTT TATATTATTGGAGTACCAGCTGATAAATCCAAGAAGAAGACCAAGATAATTCAAGATAACTGGTTTCCCGTCTGGGACGA AGAGTTTGATTTTCCCTTAACCGTTCCAGAACTAGCTTTGCTTCGGATTGAAGTTCGAGAGTATGATAAGCATGAAAAGG ATGACTTTGGCGGCCAAACATGTCTGCCGGTCTCTGAGCTAAGATCCGGGTTCCGGGCAGTCCCTCTATATGATCGAAAG GGAGAGAAATTAAAATCTGTAAAGCTTTTAATGCGGTTCCAGTTCGCATAA
Protein sequence (LotjaGi1g1v0077700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNAPLSHYFIYTGHNSYLTGNQLSSGCSDVPIMKALQGGVRVIELDLWPNSTKDDIIVLHGRTLTTPVSLIQCLKSIKEH AFVKSRYPVIITLEDHLTPDLQAKVAEMTTQIFGDMLYYPHTDLLTEFPTPESLKDRILISTKPPKEYLDAKQFKDSDTE RDSAEEGSSSPGLINEVEADNRFNGSDQYEEAINARDKKPDQQGAPEYKRLITINAGKPKGNVRDHLKIAGDVKRLSLSE QELEKASATYGADIVRFTQKNILRVYPKGTRVTSSNYRPHIGWMYGAQMVAFNMQGHGKSLWYMQGMFRANGGCGYVKKP AFLMEKGPHNEVFDPKRVLPVKKTLKVKVYMGNGWSSDFSKTHFDTFSPPDFYTKVSWIVLLMFQVRIFYIAFNQFVLQV YIIGVPADKSKKKTKIIQDNWFPVWDEEFDFPLTVPELALLRIEVREYDKHEKDDFGGQTCLPVSELRSGFRAVPLYDRK GEKLKSVKLLMRFQFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 325 | 325 | 2.79E-111 | ||
| Gene3D | 1 | 178 | 178 | 5.0E-48 | ||
| PANTHER | 1 | 377 | 377 | 2.0E-266 | ||
| Pfam | 1 | 143 | 143 | 7.7E-50 | ||
| SMART | 1 | 143 | 143 | 6.6E-68 | ||
| PANTHER | 1 | 377 | 377 | 2.0E-266 | – | |
| Phobius | 1 | 377 | 377 | - | – | |
| ProSiteProfiles | 1 | 143 | 143 | 41.022 | – | |
| PRINTS | 4 | 22 | 19 | 2.2E-44 | ||
| PRINTS | 30 | 50 | 21 | 2.2E-44 | ||
| PRINTS | 127 | 144 | 18 | 2.2E-44 | ||
| MobiDBLite | 152 | 176 | 25 | - | – | |
| Gene3D | 179 | 339 | 161 | 1.6E-33 | ||
| SMART | 208 | 324 | 117 | 6.8E-62 | ||
| Pfam | 236 | 322 | 87 | 2.7E-26 | ||
| ProSiteProfiles | 237 | 323 | 87 | 35.62 | ||
| PRINTS | 262 | 283 | 22 | 2.2E-44 | ||
| PRINTS | 283 | 301 | 19 | 2.2E-44 | ||
| CDD | 342 | 495 | 154 | 2.14123E-42 | – | |
| SMART | 344 | 476 | 133 | 9.9E-15 | ||
| SUPERFAMILY | 345 | 495 | 151 | 3.84E-25 | – | |
| Phobius | 378 | 403 | 26 | - | – | |
| TMHMM | 383 | 405 | 23 | - | – | |
| PANTHER | 395 | 495 | 101 | 2.0E-266 | ||
| PANTHER | 395 | 495 | 101 | 2.0E-266 | – | |
| ProSiteProfiles | 398 | 461 | 64 | 12.07 | ||
| Pfam | 399 | 470 | 72 | 2.6E-11 | ||
| Phobius | 404 | 496 | 93 | - | – | |
| PRINTS | 462 | 472 | 11 | 2.2E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphatidylinositol phospholipase C activity | Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1,2-diacylglycerol + 1D-myo-inositol 1,4,5-trisphosphate + H(+). | ||
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | Phosphoric diester hydrolase activity | Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. | ||
| Biological process | Intracellular signal transduction | The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. |
Expression pattern of LotjaGi1g1v0077700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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