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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002550
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 27 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.886s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0112359.1
n.a. PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic-like [Glycine max] gi|356553522|ref|XP_003545104.1| chr0 48894735 48899198 +
2 domain predictions
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Lj0g3v0303929.1
n.a. PREDICTED: DUF21 domain-containing protein At4g14240-like [Fragaria vesca subsp]. vesca] gi|470108753|ref|XP_004290673.1| chr0 158331043 158334658 +
2 domain predictions
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Lj1g3v0270450.1
n.a. PREDICTED: DUF21 domain-containing protein At4g14240-like [Fragaria vesca subsp]. vesca] gi|470108753|ref|XP_004290673.1| chr1 3278572 3282215 +
2 domain predictions
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Lj2g3v3248950.1
n.a. PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic-like [Glycine max] gi|356553522|ref|XP_003545104.1| chr2 41594923 41605213 -
2 domain predictions
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Lj4g3v0412710.2
n.a. PREDICTED: DUF21 domain-containing protein At2g14520-like [Glycine max] gi|356524776|ref|XP_003531004.1| chr4 5405345 5409458 -
2 domain predictions
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Lj4g3v2400520.1
n.a. PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max] gi|356521943|ref|XP_003529609.1| chr4 33038255 33045561 -
2 domain predictions
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Lj5g3v2297970.1
n.a. PREDICTED: DUF21 domain-containing protein At1g47330-like isoform X1 [Cicer arietinum] gi|502131534|ref|XP_004501015.1| chr5 33814011 33818812 -
2 domain predictions
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Lj5g3v2297970.2
n.a. PREDICTED: DUF21 domain-containing protein At1g47330-like isoform X1 [Cicer arietinum] gi|502131534|ref|XP_004501015.1| chr5 33814011 33818812 -
2 domain predictions
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Lj6g3v1537040.1
n.a. PREDICTED: DUF21 domain-containing protein At5g52790-like [Glycine max] gi|356561500|ref|XP_003549019.1| chr6 17646333 17651816 +
2 domain predictions
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Lj6g3v1886560.1
n.a. PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max] gi|356557879|ref|XP_003547237.1| chr6 20896853 20901442 +
2 domain predictions
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LotjaGi1g1v0019100.1
n.a. DUF21 domain-containing protein; TAIR: AT1G55930.1 CBS domain-containing protein / transporter associated domain-containing protein; Swiss-Prot: sp|Q84R21|Y1559_ARATH DUF21 domain-containing protein At1g55930, chloroplastic; TrEMBL-Plants: tr|I1M6I6|I1M6I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019100 LjG1.1_chr1 2370570 2381626 +
3 domain predictions
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LotjaGi1g1v0019100.2
n.a. DUF21 domain-containing protein; TAIR: AT1G55930.1 CBS domain-containing protein / transporter associated domain-containing protein; Swiss-Prot: sp|Q84R21|Y1559_ARATH DUF21 domain-containing protein At1g55930, chloroplastic; TrEMBL-Plants: tr|I1M6I6|I1M6I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019100 LjG1.1_chr1 2372566 2379317 +
3 domain predictions
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LotjaGi1g1v0418900.1
n.a. DUF21 domain-containing protein; TAIR: AT1G47330.1 methyltransferase, putative (DUF21); Swiss-Prot: sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330; TrEMBL-Plants: tr|A0A072V458|A0A072V458_MEDTR CBS domain protein; Found in the gene: LotjaGi1g1v0418900 LjG1.1_chr1 91263852 91269204 -
3 domain predictions
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LotjaGi1g1v0729500.1
n.a. DUF21 domain-containing-like protein; TAIR: AT1G03270.1 CBS domain protein with a domain protein (DUF21); Swiss-Prot: sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270; TrEMBL-Plants: tr|A0A0R0ENY0|A0A0R0ENY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0729500 LjG1.1_chr1 130113951 130120435 +
3 domain predictions
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LotjaGi2g1v0126000.1
n.a. DUF21 domain-containing protein; TAIR: AT5G52790.1 CBS domain protein with a domain protein (DUF21); Swiss-Prot: sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790; TrEMBL-Plants: tr|K7LDK6|K7LDK6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0126000 LjG1.1_chr2 46217482 46222017 -
3 domain predictions
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LotjaGi2g1v0126000.2
n.a. DUF21 domain-containing protein; TAIR: AT5G52790.2 CBS domain protein with a domain protein (DUF21); Swiss-Prot: sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790; TrEMBL-Plants: tr|K7LDK6|K7LDK6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0126000 LjG1.1_chr2 46218998 46221829 -
3 domain predictions
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LotjaGi2g1v0126500.1
n.a. DUF21 domain-containing protein; TAIR: AT5G52790.1 CBS domain protein with a domain protein (DUF21); Swiss-Prot: sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790; TrEMBL-Plants: tr|K7MI04|K7MI04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0126500 LjG1.1_chr2 46387461 46393570 +
3 domain predictions
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LotjaGi4g1v0044100.1
n.a. DUF21 domain-containing protein; TAIR: AT4G33700.1 CBS domain protein (DUF21); Swiss-Prot: sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700; TrEMBL-Plants: tr|A0A0L9TL72|A0A0L9TL72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0044100 LjG1.1_chr4 5199836 5204533 -
3 domain predictions
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LotjaGi4g1v0044100.2
n.a. DUF21 domain-containing protein; TAIR: AT2G14520.1 CBS domain protein (DUF21); Swiss-Prot: sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520; TrEMBL-Plants: tr|I1KQU1|I1KQU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0044100 LjG1.1_chr4 5200579 5204194 -
3 domain predictions
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LotjaGi4g1v0044100.3
n.a. DUF21 domain-containing protein; TAIR: AT2G14520.1 CBS domain protein (DUF21); Swiss-Prot: sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520; TrEMBL-Plants: tr|I1KQU1|I1KQU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0044100 LjG1.1_chr4 5201109 5204194 -
3 domain predictions
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LotjaGi4g1v0044100.4
n.a. DUF21 domain-containing protein; TAIR: AT2G14520.1 CBS domain protein (DUF21); Swiss-Prot: sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520; TrEMBL-Plants: tr|I1KQU0|I1KQU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0044100 LjG1.1_chr4 5201109 5204194 -
3 domain predictions
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LotjaGi4g1v0044100.5
n.a. DUF21 domain-containing protein; TAIR: AT2G14520.1 CBS domain protein (DUF21); Swiss-Prot: sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520; TrEMBL-Plants: tr|A0A0L9TL72|A0A0L9TL72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0044100 LjG1.1_chr4 5201790 5204194 -
3 domain predictions
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LotjaGi4g1v0351200.1
n.a. DUF21 domain-containing protein; TAIR: AT4G14240.1 CBS domain protein with a domain protein (DUF21); Swiss-Prot: sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240; TrEMBL-Plants: tr|I1KN82|I1KN82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0351200 LjG1.1_chr4 72991116 72998478 -
3 domain predictions
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LotjaGi6g1v0148300.1
n.a. DUF21 domain-containing protein; TAIR: AT1G55930.1 CBS domain-containing protein / transporter associated domain-containing protein; Swiss-Prot: sp|Q84R21|Y1559_ARATH DUF21 domain-containing protein At1g55930, chloroplastic; TrEMBL-Plants: tr|I1M6I6|I1M6I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0148300 LjG1.1_chr6 42345209 42356261 +
3 domain predictions
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LotjaGi6g1v0148300.2
n.a. DUF21 domain-containing protein; TAIR: AT1G55930.1 CBS domain-containing protein / transporter associated domain-containing protein; Swiss-Prot: sp|Q84R21|Y1559_ARATH DUF21 domain-containing protein At1g55930, chloroplastic; TrEMBL-Plants: tr|K7KBK9|K7KBK9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0148300 LjG1.1_chr6 42345381 42356251 +
3 domain predictions
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LotjaGi6g1v0299200.1
n.a. DUF21 domain-containing protein; TAIR: AT4G14240.1 CBS domain protein with a domain protein (DUF21); Swiss-Prot: sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240; TrEMBL-Plants: tr|I1MFD9|I1MFD9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0299200 LjG1.1_chr6 61706163 61712575 +
3 domain predictions
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LotjaGi6g1v0299200.2
n.a. DUF21 domain-containing protein; TAIR: AT4G14240.1 CBS domain protein with a domain protein (DUF21); Swiss-Prot: sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240; TrEMBL-Plants: tr|A0A151U0Q8|A0A151U0Q8_CAJCA Protein MAM3; Found in the gene: LotjaGi6g1v0299200 LjG1.1_chr6 61706262 61710407 +
3 domain predictions
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