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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002657
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 12 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.975s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0068949.1
n.a. PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cicer arietinum] gi|502089667|ref|XP_004488981.1| chr0 24759758 24760322 -
2 domain predictions
1 GO term
Lj0g3v0107869.1
n.a. PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cicer arietinum] gi|502089667|ref|XP_004488981.1| chr0 46536353 46539871 +
3 domain predictions
1 GO term
Lj0g3v0330459.1
n.a. PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic-like [Cicer arietinum] gi|502103317|ref|XP_004492253.1| chr0 172690389 172693810 -
3 domain predictions
1 GO term
Lj1g3v3596030.1
n.a. PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic-like [Cicer arietinum] gi|502103317|ref|XP_004492253.1| chr1 41324207 41327578 +
3 domain predictions
1 GO term
Lj2g3v2002790.1
n.a. Ileal sodium/bile acid cotransporter [Medicago truncatula] gi|357481845|ref|XP_003611208.1| chr2 30477596 30490925 -
3 domain predictions
1 GO term
Lj2g3v2002790.2
n.a. PREDICTED: probable sodium/metabolite cotransporter BASS5, chloroplastic-like [Cicer arietinum] gi|502160106|ref|XP_004511635.1| chr2 30477596 30490925 -
3 domain predictions
1 GO term
Lj4g3v1288430.1
n.a. Ileal sodium/bile acid cotransporter [Medicago truncatula] gi|357481845|ref|XP_003611208.1| chr4 19029487 19032821 +
3 domain predictions
1 GO term
Lj4g3v1288450.1
n.a. Ileal sodium/bile acid cotransporter [Medicago truncatula] gi|357481845|ref|XP_003611208.1| chr4 19034333 19039135 +
3 domain predictions
1 GO term
Lj4g3v1802300.1
n.a. Bile acid Na+ symporter family protein [Medicago truncatula] gi|357477833|ref|XP_003609202.1| chr4 25473178 25480072 -
3 domain predictions
1 GO term
LotjaGi1g1v0595200.1
n.a. Sodium Bile acid symporter family; TAIR: AT3G25410.1 Sodium Bile acid symporter family; Swiss-Prot: sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic; TrEMBL-Plants: tr|A0A151REF7|A0A151REF7_CAJCA Putative sodium-dependent transporter yocS; Found in the gene: LotjaGi1g1v0595200 LjG1.1_chr1 113479997 113483592 +
2 domain predictions
1 GO term
LotjaGi3g1v0304500.1
n.a. Sodium bile acid symporter family protein; TAIR: AT1G78560.1 Sodium Bile acid symporter family; Swiss-Prot: sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic; TrEMBL-Plants: tr|A0A1J7HU73|A0A1J7HU73_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0304500 LjG1.1_chr3 63962669 63979404 +
2 domain predictions
1 GO term
LotjaGi4g1v0265100.1
n.a. Bile acid:sodium symporter; TAIR: AT2G26900.1 Sodium Bile acid symporter family; Swiss-Prot: sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic; TrEMBL-Plants: tr|G7JU57|G7JU57_MEDTR Bile acid:sodium symporter; Found in the gene: LotjaGi4g1v0265100 LjG1.1_chr4 62987953 62995282 -
2 domain predictions
1 GO term