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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2002790 |
| Transcript ID | Lj2g3v2002790.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable sodium/metabolite cotransporter BASS5, chloroplastic-like [Cicer arietinum] gi|502160106|ref|XP_004511635.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 107 | 107 | – | – | |
| PANTHER | 38 | 421 | 384 | 4.30E-229 | ||
| PANTHER | 38 | 421 | 384 | 4.30E-229 | – | |
| TMHMM | 108 | 130 | 23 | – | – | |
| Phobius | 108 | 128 | 21 | – | – | |
| Phobius | 129 | 133 | 5 | – | – | |
| Phobius | 134 | 151 | 18 | – | – | |
| Pfam | 137 | 320 | 184 | 2.70E-40 | ||
| Phobius | 152 | 180 | 29 | – | – | |
| TMHMM | 163 | 185 | 23 | – | – | |
| Phobius | 181 | 205 | 25 | – | – | |
| TMHMM | 190 | 212 | 23 | – | – | |
| Phobius | 206 | 224 | 19 | – | – | |
| Phobius | 225 | 251 | 27 | – | – | |
| TMHMM | 227 | 249 | 23 | – | – | |
| Phobius | 252 | 262 | 11 | – | – | |
| TMHMM | 261 | 283 | 23 | – | – | |
| Phobius | 263 | 284 | 22 | – | – | |
| Phobius | 285 | 289 | 5 | – | – | |
| Phobius | 290 | 313 | 24 | – | – | |
| TMHMM | 293 | 315 | 23 | – | – | |
| Phobius | 314 | 324 | 11 | – | – | |
| TMHMM | 322 | 344 | 23 | – | – | |
| Phobius | 325 | 349 | 25 | – | – | |
| Phobius | 350 | 388 | 39 | – | – | |
| TMHMM | 387 | 409 | 23 | – | – | |
| Phobius | 389 | 409 | 21 | – | – | |
| Phobius | 410 | 421 | 12 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of Lj2g3v2002790.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2002790.2, powered by CORGI.
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