Domain Predictions — View

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PF01758

Source: Pfam

Description

Sodium Bile acid symporter family

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of GO:0005575

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0107869.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cicer arietinum] gi\|502089667\|ref\|XP_004488981.1\|	Domains CYTOPLASMIC_DOMAIN IPR002657 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF28 TMhelix TRANSMEMBRANE	8
Lj0g3v0330459.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic-like [Cicer arietinum] gi\|502103317\|ref\|XP_004492253.1\|	Domains CYTOPLASMIC_DOMAIN IPR002657 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF33 TMhelix TRANSMEMBRANE	8
Lj1g3v3596030.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic-like [Cicer arietinum] gi\|502103317\|ref\|XP_004492253.1\|	Domains CYTOPLASMIC_DOMAIN IPR002657 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF33 TMhelix TRANSMEMBRANE	8
Lj2g3v2002790.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ileal sodium/bile acid cotransporter [Medicago truncatula] gi\|357481845\|ref\|XP_003611208.1\|	Domains CYTOPLASMIC_DOMAIN IPR002657 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF30 TMhelix TRANSMEMBRANE	8
Lj2g3v2002790.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable sodium/metabolite cotransporter BASS5, chloroplastic-like [Cicer arietinum] gi\|502160106\|ref\|XP_004511635.1\|	Domains CYTOPLASMIC_DOMAIN IPR002657 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF30 TMhelix TRANSMEMBRANE	8
Lj4g3v1288430.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ileal sodium/bile acid cotransporter [Medicago truncatula] gi\|357481845\|ref\|XP_003611208.1\|	Domains CYTOPLASMIC_DOMAIN IPR002657 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF30 TMhelix TRANSMEMBRANE	8
Lj4g3v1288450.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ileal sodium/bile acid cotransporter [Medicago truncatula] gi\|357481845\|ref\|XP_003611208.1\|	Domains CYTOPLASMIC_DOMAIN IPR002657 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF30 TMhelix TRANSMEMBRANE	8
Lj4g3v1802300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Bile acid Na+ symporter family protein [Medicago truncatula] gi\|357477833\|ref\|XP_003609202.1\|	Domains CYTOPLASMIC_DOMAIN IPR002657 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF35 TMhelix TRANSMEMBRANE	8
LotjaGi1g1v0595200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sodium Bile acid symporter family; TAIR: AT3G25410.1 Sodium Bile acid symporter family; Swiss-Prot: sp\|Q8RXE8\|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic; TrEMBL-Plants: tr\|A0A151REF7\|A0A151REF7_CAJCA Putative sodium-dependent transporter yocS; Found in the gene: LotjaGi1g1v0595200	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1530.20 IPR002657 IPR004710 IPR038770 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF33 TMhelix TRANSMEMBRANE mobidb-lite	12
LotjaGi3g1v0304500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sodium bile acid symporter family protein; TAIR: AT1G78560.1 Sodium Bile acid symporter family; Swiss-Prot: sp\|Q93YR2\|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic; TrEMBL-Plants: tr\|A0A1J7HU73\|A0A1J7HU73_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0304500	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1530.20 IPR002657 IPR004710 IPR038770 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF28 TMhelix TRANSMEMBRANE	11
LotjaGi4g1v0265100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Bile acid:sodium symporter; TAIR: AT2G26900.1 Sodium Bile acid symporter family; Swiss-Prot: sp\|Q1EBV7\|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic; TrEMBL-Plants: tr\|G7JU57\|G7JU57_MEDTR Bile acid:sodium symporter; Found in the gene: LotjaGi4g1v0265100	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1530.20 IPR002657 IPR004710 IPR038770 NON_CYTOPLASMIC_DOMAIN PF01758 PTHR10361 PTHR10361:SF62 TIGR00841 TMhelix TRANSMEMBRANE	12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TRANSMEMBRANE	Phobius	1	9.09