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LotjaGi1g1v0046600.1

Overview

Field Value
Gene ID LotjaGi1g1v0046600
Transcript ID LotjaGi1g1v0046600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Oxygen-evolving enhancer protein 2-1, chloroplastic; TAIR: AT1G06680.1 photosystem II subunit P-1; Swiss-Prot: sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic; TrEMBL-Plants: tr|A0A151U238|A0A151U238_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0046600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:6357201..6361181) extracted from Lotus japonicus Gifu genome v1.2.

CCCTGTGGCAATATAAGAATGAGAATACGTGGCACCAATGAGAGCCCCTAGTATCTTATCCCACACAAAAAATCTAAAAA TCGAATCAAATAATCCACTTCCAACACCACAACATCTAAACTAATTTCCAACACCACAAGTTGTGTGATCTCACAAGAGT GGTAGAGTGAGAGACAGCACTACTATGGCTTCAACTCAATGTTTCTTGTACCACCATGCCCTCACTTCTAGAGCCTCATC AATACAACGCCTAGTGGTAAATACCAAGCCAAACCAGGTGTTTTGCAAGGCCCAAAAGCAAGCAACCCAAGAGGAAGATG ATGCTAGTATTGTCTCTCGCCGGTTAGCTCTCACTGTGCTCATTGGTGCTGCTGCTGTTGGCTCTAAGGTCTCTCCTGCT GATGCAGCCTATGGGGAATCTGGTATTTTGCTTTCTCTTTCTCATCAGTTCATCAAGCTGTGTTACATGAGTCATAGCCC TGTTTGTTAATTCTCTGTTTCTAGTCCCACATTGACCAAGATATGTCTAAAATAGTTCTTATAAGTGCCCTGAGTTAGAT TTTATGTATAGTTAGGCCTAAATTGAATTCTAAGCCTATTTCAACGAAATTTCATACAAAACTCAAGTGATGATAAGTGA TAACACCTAACCTTTGGCTTTGGTTGGAATGAAATAGTGTGTTTGGAAACTCAATGGATGGATAGTATGTTTGGATCAGC TTCTATTTACTCAGAATTAATTATAACTCAGAAACTACTCAGAGTTAGATTTTATGTATAGTTAGGCCTAAATTGAATTC TAAGCCTATTTCAACGAAATTTCATACAAAACTCAAGTGATGATAAGTGATAACACCTAACCTTTGGCTTTGGTTGGAAT GAAATAGTGTGTTTGGAAACTCAATGGATGGATAGTATGTTTGGATCAGCTTCTATTTACTCAGAATTAATTATAACTCA GAAACTACTCAGAGTTAGATTTTATGTATAGTTAGGCCTAAATTGAATTCTAAGCCTATTTCAACGAAATTTCATACAAA ACTCAAGTGATGATAAGTGATAACACCTAACCTTTGGCTTTGGTTGGAATGAAATAGTGTGTTTGGAAACTCAATGGATG TATAGTATGTTTGGATCAGCTTCTATTTACTCAGAATTAATTATAACTCAGAAACTACTCAGAGTTAGATTTTATGTATA GTTAGGCCTAAATTGAATTCTAAGCCTATTTCAACGAAATTTCATACAAAACTCAAGTGATGATAAGTGATAACACCTAA CCTTTGGCTTTGGTTGGAATGAAATAGTGTGTTTGGAAACTCAATGGATGTATAGTATGTTTGGATCAGCTTCTATTTAC TCAGAATTAATTATAACTCAGAAACTACTCACATGCCTGAAATTGATTTTACCTTTAGAGTAAGCGACTCCTGGTAGCTT TAGTGAAATGAGAAGTGATTCTGGAATGTTTAAATGTGAAATCAAACATGTTAATACTAATAGTCATTTGCATGATTGCT CCACTCTTTTAAAAGATCAGTAGTATGCTTTAGGGAACCATGTAGTATCTTAGGTACCATGAAAATTCATGTGACATTCA AGTGGCTGCAAGCCTGCAATTACTTTGGTTTGAACTGAAATTCTATTGAAGTACTGAAGTGTATTATTTCCTTCTTTTTT TTTTTTGATAAGCCAAGATTTGTATTTAAATAGAGCACGAGGGGTGCTTACCCAAATACAAAGAGATAAGATTGTTTAGC AAGTAATCAAAACCAAGCTGGATAATCAAACAAGGATAGAAAATAACAAAAGATAAGATAGAATTATAGCAGCAAACTCT ATCTTAAGATTAGAACAAGATCCTATCTCCACAAAGCCTTGCCACGAGAGCCTGCCAGTATTATTTCCTTCTACTTTTTG TGAATTGCCCACCCTTTACTTGCTGTAGTTTAGGATGAAATAAATTGAGTGATCATAGGATATAATCCTAAGGTAGGAAT TTACTTAAGCCTAGATGGTGAATGTCCAGAACTAAATCAACTAAGAAGCTTAGGCATCGAATTGAAGCTCCAAGGGGGTT TATTTGTCCTTTGGCTTGAAGTATAAGCTCACTCGCACCATTTGGCTAATGTCTTTAATACCATGCCATTCAAGGATAAA CTAATCTCAAAAGTTGAAGTTGTTAGGTGGGGGCCCAGAAATGAATTTTATCCCTTATATGGGAGATGAAATGACTTGAG CATTTAGATATTGGTGTTCTGCAAATTTTTAGAAAATGTTGAGCAATATTGATTGTTTTGCTTGCAGCCAATGTGTTTGG AAAACCAAAGACCAACACAGACTTCCTCCCATACAATGGAGATGGATTCAAACTTTCTGTTCCCTCGAAGTGGAACCCAA GCAAAGAGGTTGAGTACACAGGTCAGGTTCTTAGATATGAGGACAACTTTGATTCAACCAGCAATGTCGTTGTCACAGTG ACTCCAACTGATAAGAAGTCCATCACTGACTATGGTTCACCTGAGGAGTTCCTCTCTAAGGTATAGACTATAGTACTTGT TTTGAACTAGTACTTATGCTGGTTTTCTAACCAATAAGAAACAAAAGTTATAGCTTGAATGATTATCATTGAAAAAGTAC AATGTCTATAAACTTTTGAAGACAATGAGAACAGTTGCTACTTGCTGGTTGAAATTCAAGATTTGATGTTTCATCTTTGC AGGTGGATTATTTACTAGGAAAACAGGCCTTCTTCGGCGAAACTCAAGCTGAGGTAATGTGACTGAGAATTAAACACAAA AAATGAGTAAACCATCATTTTGCTACCTGAAAGGTATTGAGATGGTCACTATAGTCCTTGAAATATAGAAATCACATTTT TCCTCCCCACAAAGATGAAAAAGGCAATCAATTTAGTGATTTTCAGGGACTTAATTGATGTTTCAAAAGGACTATATTGA TTGCATTTTTCATCTTTGATGGATGAAAAAGATAATTACCATCTTTCAGGGATTAAAGTAACTGTCTTGATATCTTTTTA GGACTGAAATGATGGCTTACTCAACAAATAATGCACCAAATATTATTGCATATACTAACTTAGTATGCACTATAATTTTT CAGGGTGGTTTTGATCCAAATGCTGTTGCCACCGCAAACATCTTAGAGAGTTCAACACCTGTTGTTGACGGGAAACAGTA CTATGTTTTGACTGTGTTGACAAGGACTGCTGATGGAGATGAAGGTGGTAAGCACCAACTGATTAGAGCAGCTGTGAAAG ATGGAAAGCTATACATTTGCAAGGCTCAAGCCGGAGACAAGAGGTGGTTCAAAGGAGCAAGAAGATATGTGGAGAGCACA GCAAGTTCTTTCAGTGTTGCTTAAGAACTTAATAGAGTGTCATGCTGCATGTGAATCAAGTTCTAGTGCTATTATGTGTT GGGCTTTCCAGCCTCCCTGTAGTCCCTAAGTTTCATGGTTTGAGGGACTTGGTGTGACTAAGTATCTAAATACTTAATTT GCATGGCATTGTAAAGACAGGCCCACCATAGTTTATTTTTCTTTTTATACCCTTTAAGTGTGTGATTAGATACTAGTTGA GTGTGACATAAACCGAACTTCATCTCAAAACATATGATAAGTTTCCTTCACATTTTTCCTTGAAGTGAGTGCTAACATTC GTTTGCACATGAGATATTCAAGCATAGCTTTAGTTGCCTTCATTAAGCTGCTACAAGCCATTGCAAAAACTACATGTTTG ATAGAAGGTTCAAGGTGTATGCATGTTTTAAGATTGCTAAGATTCATATTGAAGGGAAAAAGTTATCTCAAGGAAAGCAT TATATGAAGTTGATCACAAAGAGAATGAGGCTAAACAAGTGAACGTAGATAGATGAAAGGTGTAATTTAAAGGATGAAGC GTTTATAAGCATTGGTTGAAATAAGGGTGCATGTAAATGCTTTTATAACTGTTTTTTTTTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0046600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCAACTCAATGTTTCTTGTACCACCATGCCCTCACTTCTAGAGCCTCATCAATACAACGCCTAGTGGTAAATAC CAAGCCAAACCAGGTGTTTTGCAAGGCCCAAAAGCAAGCAACCCAAGAGGAAGATGATGCTAGTATTGTCTCTCGCCGGT TAGCTCTCACTGTGCTCATTGGTGCTGCTGCTGTTGGCTCTAAGGTCTCTCCTGCTGATGCAGCCTATGGGGAATCTGCC AATGTGTTTGGAAAACCAAAGACCAACACAGACTTCCTCCCATACAATGGAGATGGATTCAAACTTTCTGTTCCCTCGAA GTGGAACCCAAGCAAAGAGGTTGAGTACACAGGTCAGGTTCTTAGATATGAGGACAACTTTGATTCAACCAGCAATGTCG TTGTCACAGTGACTCCAACTGATAAGAAGTCCATCACTGACTATGGTTCACCTGAGGAGTTCCTCTCTAAGGTGGATTAT TTACTAGGAAAACAGGCCTTCTTCGGCGAAACTCAAGCTGAGGGTGGTTTTGATCCAAATGCTGTTGCCACCGCAAACAT CTTAGAGAGTTCAACACCTGTTGTTGACGGGAAACAGTACTATGTTTTGACTGTGTTGACAAGGACTGCTGATGGAGATG AAGGTGGTAAGCACCAACTGATTAGAGCAGCTGTGAAAGATGGAAAGCTATACATTTGCAAGGCTCAAGCCGGAGACAAG AGGTGGTTCAAAGGAGCAAGAAGATATGTGGAGAGCACAGCAAGTTCTTTCAGTGTTGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0046600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASTQCFLYHHALTSRASSIQRLVVNTKPNQVFCKAQKQATQEEDDASIVSRRLALTVLIGAAAVGSKVSPADAAYGESA NVFGKPKTNTDFLPYNGDGFKLSVPSKWNPSKEVEYTGQVLRYEDNFDSTSNVVVTVTPTDKKSITDYGSPEEFLSKVDY LLGKQAFFGETQAEGGFDPNAVATANILESSTPVVDGKQYYVLTVLTRTADGDEGGKHQLIRAAVKDGKLYICKAQAGDK RWFKGARRYVESTASSFSVA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31407
1 258 258 8.3E-161 –
PANTHER
PTHR31407:SF37
1 258 258 8.3E-161 –
Gene3D
G3DSA:3.40.1000.10
75 260 186 2.2E-85
IPR016123
Pfam
PF01789
91 259 169 1.3E-36
IPR002683
SUPERFAMILY
SSF55724
91 259 169 6.28E-55
IPR016123

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of
GO:0009523
Cellular component Photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
Subterm of
GO:0009654
Cellular component Photosystem II oxygen evolving complex A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
Subterm of
Part of
GO:0015979
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Subterm of
GO:0019898
Cellular component Extrinsic component of membrane The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0046600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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