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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002687
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 22 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.955s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3765010.1
n.a. PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like isoform X2 [Cicer arietinum] gi|502100538|ref|XP_004491744.1| chr1 43147820 43149713 -
4 domain predictions
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Lj2g3v0663770.1
n.a. PREDICTED: nucleolar protein 56-like, partial [Glycine max] gi|356529505|ref|XP_003533331.1| chr2 10775324 10779903 -
4 domain predictions
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Lj2g3v0663770.2
n.a. PREDICTED: nucleolar protein 56-like isoform 1 [Glycine max] gi|356513997|ref|XP_003525694.1| chr2 10776522 10779903 -
3 domain predictions
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Lj2g3v0663770.3
n.a. PREDICTED: nucleolar protein 56-like [Glycine max] gi|356563188|ref|XP_003549846.1| chr2 10777354 10779293 -
4 domain predictions
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Lj3g3v2515480.1
n.a. PREDICTED: nucleolar protein 56-like [Glycine max] gi|356563188|ref|XP_003549846.1| chr3 30770833 30773307 -
4 domain predictions
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Lj3g3v3375700.1
n.a. SAR DNA-binding protein-like protein [Lotus japonicus] gi|33945887|emb|CAE45597.1| chr3 41490748 41494372 +
4 domain predictions
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LotjaGi1g1v0618800.1
n.a. U4/U6 small nuclear ribonucleoprotein Prp31; TAIR: AT1G60170.1 pre-mRNA processing ribonucleoprotein binding region-containing protein; Swiss-Prot: sp|Q8RXN6|PRP31_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog; TrEMBL-Plants: tr|A0A0S3TBB0|A0A0S3TBB0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618800 LjG1.1_chr1 116573724 116583882 -
3 domain predictions
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LotjaGi1g1v0618800.3
n.a. U4/U6 small nuclear ribonucleoprotein Prp31; TAIR: AT1G60170.1 pre-mRNA processing ribonucleoprotein binding region-containing protein; Swiss-Prot: sp|Q8RXN6|PRP31_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog; TrEMBL-Plants: tr|A0A0S3TBB0|A0A0S3TBB0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618800 LjG1.1_chr1 116574241 116583635 -
3 domain predictions
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LotjaGi1g1v0618800.4
n.a. U4/U6 small nuclear ribonucleoprotein Prp31; TAIR: AT1G60170.1 pre-mRNA processing ribonucleoprotein binding region-containing protein; Swiss-Prot: sp|Q8RXN6|PRP31_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog; TrEMBL-Plants: tr|A0A0S3TBB0|A0A0S3TBB0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618800 LjG1.1_chr1 116574241 116583780 -
3 domain predictions
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LotjaGi2g1v0196600_LC.1
n.a. Nucleolar protein; TAIR: AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q3SZ63|NOP56_BOVIN Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC LjG1.1_chr2 63089980 63095559 -
3 domain predictions
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LotjaGi2g1v0196600_LC.10
n.a. Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC LjG1.1_chr2 63091273 63094036 -
2 domain predictions
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LotjaGi2g1v0196600_LC.2
n.a. Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC LjG1.1_chr2 63089980 63095559 -
2 domain predictions
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LotjaGi2g1v0196600_LC.3
n.a. Nucleolar protein; TAIR: AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q3SZ63|NOP56_BOVIN Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC LjG1.1_chr2 63090606 63094036 -
3 domain predictions
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LotjaGi2g1v0196600_LC.4
n.a. Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC LjG1.1_chr2 63090606 63094036 -
2 domain predictions
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LotjaGi2g1v0196600_LC.5
n.a. Nucleolar protein; TAIR: AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O00567|NOP56_HUMAN Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC LjG1.1_chr2 63090644 63094036 -
3 domain predictions
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LotjaGi2g1v0196600_LC.6
n.a. Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC LjG1.1_chr2 63090644 63094036 -
2 domain predictions
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LotjaGi2g1v0196600_LC.7
n.a. Nucleolar protein; TAIR: AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O00567|NOP56_HUMAN Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC LjG1.1_chr2 63090659 63094036 -
3 domain predictions
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LotjaGi2g1v0196600_LC.8
n.a. Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC LjG1.1_chr2 63090659 63094036 -
2 domain predictions
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LotjaGi2g1v0196600_LC.9
n.a. Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC LjG1.1_chr2 63090668 63094036 -
2 domain predictions
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LotjaGi3g1v0511600.1
n.a. Nucleolar protein; TAIR: AT3G05060.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q9MAB3|NOP5B_ARATH Probable nucleolar protein 5-2; TrEMBL-Plants: tr|Q70I27|Q70I27_LOTJA SAR DNA-binding protein-like protein; Found in the gene: LotjaGi3g1v0511600 LjG1.1_chr3 92880815 92885250 +
3 domain predictions
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LotjaGi3g1v0511600.2
n.a. Nucleolar protein; TAIR: AT3G05060.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q9MAB3|NOP5B_ARATH Probable nucleolar protein 5-2; TrEMBL-Plants: tr|Q70I27|Q70I27_LOTJA SAR DNA-binding protein-like protein; Found in the gene: LotjaGi3g1v0511600 LjG1.1_chr3 92881245 92884512 +
3 domain predictions
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LotjaGi4g1v0223200.1
n.a. Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I3S8I2|I3S8I2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0223200 LjG1.1_chr4 52822276 52825795 -
3 domain predictions
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