Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0511600 |
| Transcript ID | LotjaGi3g1v0511600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleolar protein; TAIR: AT3G05060.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q9MAB3|NOP5B_ARATH Probable nucleolar protein 5-2; TrEMBL-Plants: tr|Q70I27|Q70I27_LOTJA SAR DNA-binding protein-like protein; Found in the gene: LotjaGi3g1v0511600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92880815..92885250) extracted from Lotus japonicus Gifu genome v1.2.
GAAATTCCGTAATAATATAAATATGTGTAAACCATGTCTGATGTGTCAAACATATTTTAGGTTTCGCCTCCACTCTCTTT CTCGTCTTTGTTCTGCTGCGTCTTCTTCAACCCTGGCCTAGGGTTTATGCCGCTTAAACCCTTCTTCTCTTCAAGCTCAT AGACCAGGTTTTCCTCTTCTCCTTCCATTATCATCTGTTTCCCTCTCTTCACTGCACCTCTGTATTCTTCGCATACCATA GTACTAGTCACAACACTAGGTAGTTTCTTCTGGGTCGGCGAACTCTTGTGTTTTCTTTGTCACTTTTGCATGTTTTGATC ATCAATGCGTTGAAAAAGTGCTTTCGTGAGTTATTTGTTGTTTTTTCTTATGTGGGTTGTTAATGGAATGATTTTTTGCT TTGTTTCTCAGGTTTGTTGGAGGTGTCAAAATGCTTGTTCTGTTTGAAACACCTGCGGGTTTTGCCCTATTCAAAGTTCT GGATGAAGGCAAACTCTCTAAAGTTGAGGTGATTATCTCTTGTTTCCCTTTTTTTCCAGCACTGGTAGTCTTTTCTGTTT GAATGATGTAGCAAAGTGCAGAATCTACTACTTTTTTCTTCATATCTGTCTGATCTTTTATAAGAGTTCATTAAACTATG TAATAATATACTTGTTTCTGTTTTTCACATTCATTTAGACTTTGATCTAATTGATTTATGTTATACACACTTATTATATG CAGGACTTGTGGAAGGATTTCTCAAGTGCAGACAAGGCTAGACAGGTTTGGCTCTCTGCATTTCTCCCACCCCTTATTCC CTTTCAATTGCATTTTTGCTGGTGCTTGCAATATGATAAGGGGGAACTGTTTTTTATTTATTGAAGTTTCTCAGAGATCA TGAAGCTAACTCTAATTGGTGTCTAATTAGGTGGTCAAGCTGAAAGCCTTTTCTAAGTTTGAGAATACTTCAGAAGCTCT AGAGGCAGCTACTTTGCTGATTGATGGAAAAGCTAGCAAGGGTCTGCGCAAGTTCCTTCGCGCTCATTGCGAAGATGAGA TGTTAGCTGTTGCTGATTCAAAGCTCGGGAACATGATTAAGGAGAAATTGGTGGGCCATCTAAGTTTCCCTTAGCAACTT GTTAATCACGATTTACATTTCATCCATCTTATAGCTGTTGCTGATGTTAGCTGTATGTTTTAAACCTTTCAGAAAATTGA TTGTGTTCACAACAATGCTGTTATGGAGTTGATGAGAGGGGTTAGAAATCAGTTAAATGAACTCATATCTGGTCTTGCTG TTCAAGACATGGCCCCAATGAGCTTGGGTTTGTCTCATAGCTTATCCAGATACAAGCTCAAGTTTAGCGCAGAAAAGGTG TATTTTCTGTTGACTTTGAAGATACTTGATGTTTATCATTGTAATTGTTCTATTTTTATTTTATTTTCCCTTGTCCATAT ATGGACATGGCTTGAACTTTTATTGTGTTAATATCCACATTCTATCTGTTATTCATCAAAGAAATTCTTACGAAATTTGA TTATTGATTGATTGATTCAAGTTAAGGCATCATGTTATTAGTTTCAACGGTCATGAGAAGAAAATTGTTCTTTTTTCTGA TAGACATGTTTAGAATGTAAAAAGTGCATGATTTATTATTTGTTTTGAACCTTTGGTAGTTAATATTGTTTATCTTGTAT TTTAATTTCATCATTGCTCTCTTTAGGTTCAACCATAGTTTTTGAATTGAGGTTCACCATTATTTTTGCCACTATTGTGA TAATTATGTCCTTTGAAAATTTGTTAGATTTCCACATTTGTAGTTTCTAGTGTGCCTGAATAGTTGGTAACCTAAATATT AACTTAGGGACTTAATTATACATGGTTCTTTAAGGTAGGGTGAGTTTGAGCCTTTAGAAACAGACATACTATAAAAGTGT CTATTAATTATCTTTTTTAAATTACTAATTTGTAATTAATTGGTTTTAGTGTTACTTTTAACTGATGCAAATGGTTGTTG ATTATTTTTATTTTCTGTTTTTGCATGATATTTTCCCAACTTTTGGATAACAGCTATTTCCTGACCTTATGATGCTTTTG ATCAGGTCGACACCATGGTTGTTCAGGCTATAGGCTTACTTGATGATCTTGATAAGGAGTTGAATACATACGCCATGAGG GTTCGAGAATGGTATGGTTGGCATTTTCCAGAGCTTACCAAAATCATTCAGGATAACATCCAATATGCTAAGGCAGTCAA ATTGATGGGTGATCGTGTTAATGCTGCACAGACTGATTTCTCTGAGGTAGAATTTTGACGTGTCTGTAACATTGTGCTCC CAATGGTTTTTTTCTTACTATGGCATACATTTAACAAACAGATAATCTTGATTTTCTCTAATTCTGGACCAATTAGGACA GCCTCTATATCTACTTATAGCTTGAACTTTATGCTTACAGCTTAACTTGTATATTCGAAAATTATTAGTTCTTTTATCTA CAATGCTTCTATAGCCTATAATTTTATGTTTGAGTAACTGCTGCTTTACTATTTTTAACTATACATAAACTTACAGACTT TGCCAGAAGAGGTTGAGGAGGAGGTGAAGGAAGCGTCTGTGATATCTATGGGAACTGAAATTGGTGAGCTTGATTTGATG AATATTAAGGAGCTTTGTGACCAGGTTTTGTCTCTTTCAGAATATAGAGCTCAACTCTATGATTATCTGAAGAGTAGGAT GAACTCCATTGCACCCAATTTGACTGCTCTTGTTGGGGAGCTTGTTGGTGCCCGCCTCATTGCCCATGGTGGCAGCTTAA TAAATCTGGCAAAGCAGCCTGGTAGTACTGTGCAGATTCTTGGTGCTGAGAAGGCTCTCTTTAGGGCACTTAAGACCAAG CATGCTACTCCCAAGTATGGTCTTATATACCATGCATCCTTGATTGGTCAGGCAGCTCCAAAGCTTAAGGGGAAAATTTC CCGGTCACTTGCTGCAAAGGCAGCATTGGCTATCAGGTGCGATGCACTTGGAGATGGTGTAGATAACACCATGGGATTGG AAAACAGAGCCAAGGTACTTGTACATCTAGTTGCATGCCTCATGCTTTTTTACTCTGCAGATTTTCCTTACACAAGTTTT TATACAGCTTGAATTACGATTGAGGAATCTTGAAGGAAAGGAATTAGGTCGTTTCGCTGGTTCTGCTAAAGGGAAGCCTA AGATAGAAGCATATGACAAGGATCGAAAGAAAGGAGCCGGAGGACTGATTACCCCAGCTAAGGTTTGTCTGTTACTAAAT GTAGCAATGCTTGTAATTTTCATTTCTATATTAACTCTGCTGATTTTCCTTTTCTTTGCAGACATATAATCCTTCAGCTG ATGCTGTTATTTCACAAAAATCTGATTCTGCAATGGATGAAGATACACATGAGCCTTCTGCTGATAAAAAGAAGGAAAAG AAAGAAAAGAAGAAGAAGAAAGAGAAAAATGAAGAGAAGGATGTGCCTTTGCTGGCTGATGAAGATGGTGATGAGGAAAA AGAAGTTGTGAAAAAGGAAAAGAAGAAAAAGAGGAAGGAATCTACTGAGAATGTTGAGTTGCAGAATGGGGACGATGCAG GAGAAAAGAAGAAAAAGAGGAAAAAGCATGCAGAGCCGGAAGAGTCAGCTGAAATGCCAAGCAAAAAGAAAGGAAAAAAG AAGAAAAGCGAGGACTGAAGTGGAATAGATGTTGTTTCACCAGCTAGTCAATCTGGTGACTGGCAACCATTTTTGTCTGC TTCTGGAGCTCTGTAGTTTATGGGTACTTTTTTTTTTGTTTATTTTGATGCAATTTGTAGCTGTATACGTTCTAATTTGT TTCTTTAATGGGATATCTCGTCTTTAAAGACTTGGGTTAGATTATTTGATGTTTTCGTGTTTGTGAATGGTAAATGATGG TGCTGAACCCTTTGTTCTATTACACCACCTTTCTGATCCAACTTAGCATATAGACCTGATGATATTTGAATTTAGCTAGA AGATTGGTGGAGGCCATGAGCTAGCTACTTAGGGTCTGTTTGACTACAATTTTCAAATTTTCTTCTGAAAAAATGAGTTT TAAAAATTGTTTCTGAAAATAGTTTTATCAAACAGGCCCTTAAAAATCTAATCGTTTTATTGCTAGCTGTGTTCACCATG AAGGATATTGTTCGGTAGAATTTCAAGTTTAACAACATTAAGATCATATTTTCTTTACATTGGCAGAAGTTAGTGATCAC TGAAACTTAGTGATCACTGAAACTTATTGACATCGTATGCGTTTTAATTTATGAAGTTTCCAATTTTATCACCCCAATTA TTTTATTTAACTTAATTGTAAGACTTCCAAACAATCTTTGCTTTTATAGTTACTGGATTTCATCCATCCATCATACCATC TGAAACTGAATGAAATCCGTTCTATACACTTCTTAC
CDS sequence (LotjaGi3g1v0511600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGTTCTGTTTGAAACACCTGCGGGTTTTGCCCTATTCAAAGTTCTGGATGAAGGCAAACTCTCTAAAGTTGAGGA CTTGTGGAAGGATTTCTCAAGTGCAGACAAGGCTAGACAGGTGGTCAAGCTGAAAGCCTTTTCTAAGTTTGAGAATACTT CAGAAGCTCTAGAGGCAGCTACTTTGCTGATTGATGGAAAAGCTAGCAAGGGTCTGCGCAAGTTCCTTCGCGCTCATTGC GAAGATGAGATGTTAGCTGTTGCTGATTCAAAGCTCGGGAACATGATTAAGGAGAAATTGAAAATTGATTGTGTTCACAA CAATGCTGTTATGGAGTTGATGAGAGGGGTTAGAAATCAGTTAAATGAACTCATATCTGGTCTTGCTGTTCAAGACATGG CCCCAATGAGCTTGGGTTTGTCTCATAGCTTATCCAGATACAAGCTCAAGTTTAGCGCAGAAAAGGTCGACACCATGGTT GTTCAGGCTATAGGCTTACTTGATGATCTTGATAAGGAGTTGAATACATACGCCATGAGGGTTCGAGAATGGTATGGTTG GCATTTTCCAGAGCTTACCAAAATCATTCAGGATAACATCCAATATGCTAAGGCAGTCAAATTGATGGGTGATCGTGTTA ATGCTGCACAGACTGATTTCTCTGAGACTTTGCCAGAAGAGGTTGAGGAGGAGGTGAAGGAAGCGTCTGTGATATCTATG GGAACTGAAATTGGTGAGCTTGATTTGATGAATATTAAGGAGCTTTGTGACCAGGTTTTGTCTCTTTCAGAATATAGAGC TCAACTCTATGATTATCTGAAGAGTAGGATGAACTCCATTGCACCCAATTTGACTGCTCTTGTTGGGGAGCTTGTTGGTG CCCGCCTCATTGCCCATGGTGGCAGCTTAATAAATCTGGCAAAGCAGCCTGGTAGTACTGTGCAGATTCTTGGTGCTGAG AAGGCTCTCTTTAGGGCACTTAAGACCAAGCATGCTACTCCCAAGTATGGTCTTATATACCATGCATCCTTGATTGGTCA GGCAGCTCCAAAGCTTAAGGGGAAAATTTCCCGGTCACTTGCTGCAAAGGCAGCATTGGCTATCAGGTGCGATGCACTTG GAGATGGTGTAGATAACACCATGGGATTGGAAAACAGAGCCAAGCTTGAATTACGATTGAGGAATCTTGAAGGAAAGGAA TTAGGTCGTTTCGCTGGTTCTGCTAAAGGGAAGCCTAAGATAGAAGCATATGACAAGGATCGAAAGAAAGGAGCCGGAGG ACTGATTACCCCAGCTAAGACATATAATCCTTCAGCTGATGCTGTTATTTCACAAAAATCTGATTCTGCAATGGATGAAG ATACACATGAGCCTTCTGCTGATAAAAAGAAGGAAAAGAAAGAAAAGAAGAAGAAGAAAGAGAAAAATGAAGAGAAGGAT GTGCCTTTGCTGGCTGATGAAGATGGTGATGAGGAAAAAGAAGTTGTGAAAAAGGAAAAGAAGAAAAAGAGGAAGGAATC TACTGAGAATGTTGAGTTGCAGAATGGGGACGATGCAGGAGAAAAGAAGAAAAAGAGGAAAAAGCATGCAGAGCCGGAAG AGTCAGCTGAAATGCCAAGCAAAAAGAAAGGAAAAAAGAAGAAAAGCGAGGACTGA
Protein sequence (LotjaGi3g1v0511600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADKARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRAHC EDEMLAVADSKLGNMIKEKLKIDCVHNNAVMELMRGVRNQLNELISGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMV VQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNIQYAKAVKLMGDRVNAAQTDFSETLPEEVEEEVKEASVISM GTEIGELDLMNIKELCDQVLSLSEYRAQLYDYLKSRMNSIAPNLTALVGELVGARLIAHGGSLINLAKQPGSTVQILGAE KALFRALKTKHATPKYGLIYHASLIGQAAPKLKGKISRSLAAKAALAIRCDALGDGVDNTMGLENRAKLELRLRNLEGKE LGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNPSADAVISQKSDSAMDEDTHEPSADKKKEKKEKKKKKEKNEEKD VPLLADEDGDEEKEVVKKEKKKKRKESTENVELQNGDDAGEKKKKRKKHAEPEESAEMPSKKKGKKKKSED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 550 | 550 | 5.1E-270 | – | |
| PANTHER | 1 | 550 | 550 | 5.1E-270 | – | |
| Pfam | 2 | 66 | 65 | 3.7E-22 | ||
| SUPERFAMILY | 153 | 397 | 245 | 3.92E-92 | ||
| SMART | 159 | 211 | 53 | 1.3E-32 | ||
| Gene3D | 160 | 271 | 112 | 3.1E-47 | ||
| Pfam | 166 | 394 | 229 | 9.7E-84 | ||
| Gene3D | 190 | 240 | 51 | 3.1E-47 | – | |
| Gene3D | 272 | 399 | 128 | 1.6E-50 | ||
| ProSiteProfiles | 280 | 398 | 119 | 36.621 | ||
| MobiDBLite | 407 | 551 | 145 | - | – | |
| MobiDBLite | 412 | 426 | 15 | - | – | |
| MobiDBLite | 447 | 464 | 18 | - | – | |
| Coils | 459 | 480 | 22 | - | – | |
| MobiDBLite | 490 | 551 | 62 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0511600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…