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Lj3g3v2318240.2

Overview

Field Value
Gene ID Lj3g3v2318240
Transcript ID Lj3g3v2318240.2
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: poly(A) polymerase-like [Glycine max] gi|356528904|ref|XP_003533037.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10682
1 531 531 0
IPR014492
PANTHER
PTHR10682:SF24
1 531 531 0 –
SUPERFAMILY
SSF81301
14 208 195 3.87E-51 –
Pfam
PF04928
15 359 345 1.80E-106
IPR007012
CDD
cd05402
54 209 156 3.30E-29 –
Pfam
PF01909
85 162 78 1.30E-08
IPR002934
Gene3D
G3DSA:1.10.1410.10
155 360 206 7.30E-87 –
SUPERFAMILY
SSF81631
210 359 150 1.94E-61 –
Pfam
PF04926
362 419 58 1.30E-08
IPR007010
Gene3D
G3DSA:3.30.70.590
362 487 126 1.00E-30
IPR007010
SUPERFAMILY
SSF55003
362 488 127 1.75E-33
IPR011068
MobiDBLite
mobidb-lite
488 556 69 – –
MobiDBLite
mobidb-lite
576 615 40 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0004652
Molecular function Polynucleotide adenylyltransferase activity Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0016779
Molecular function Nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
Subterm of
GO:0031123
Biological process RNA 3'-end processing Any process involved in forming the mature 3' end of an RNA molecule.
Subterm of
GO:0043631
Biological process RNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v2318240.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2318240.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.