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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2095480 |
| Transcript ID | Lj1g3v2095480.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: poly(A) polymerase-like [Glycine max] gi|356515639|ref|XP_003526506.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | – | – | |
| Pfam | 10 | 354 | 345 | 7.90E-104 | ||
| SUPERFAMILY | 10 | 203 | 194 | 3.14E-49 | – | |
| PANTHER | 20 | 628 | 609 | 0 | ||
| PANTHER | 20 | 628 | 609 | 0 | – | |
| CDD | 49 | 204 | 156 | 3.16E-26 | – | |
| Pfam | 83 | 157 | 75 | 2.90E-08 | ||
| Gene3D | 150 | 355 | 206 | 4.00E-89 | – | |
| SUPERFAMILY | 205 | 354 | 150 | 8.37E-63 | – | |
| Pfam | 357 | 416 | 60 | 1.80E-11 | ||
| Gene3D | 357 | 483 | 127 | 4.70E-33 | ||
| SUPERFAMILY | 357 | 484 | 128 | 7.26E-36 | ||
| Pfam | 419 | 490 | 72 | 2.50E-07 | ||
| MobiDBLite | 494 | 563 | 70 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Polynucleotide adenylyltransferase activity | Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | Nucleotidyltransferase activity | Catalysis of the transfer of a nucleotidyl group to a reactant. | ||
| Biological process | RNA 3'-end processing | Any process involved in forming the mature 3' end of an RNA molecule. | ||
| Biological process | RNA polyadenylation | The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule. |
Expression pattern of Lj1g3v2095480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2095480.1, powered by CORGI.
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