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LotjaGi3g1v0371900.2

Overview

Field Value
Gene ID LotjaGi3g1v0371900
Transcript ID LotjaGi3g1v0371900.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Poly(A) polymerase; TAIR: AT4G32850.10 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|A0A151SH17|A0A151SH17_CAJCA Poly(A) polymerase; Found in the gene: LotjaGi3g1v0371900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:76192295..76199440) extracted from Lotus japonicus Gifu genome v1.2.

TTTCGATATGATATTTAAAAAAAAGCCTTAAAAAAATAAAATAAGTGTGATATTATCTTTGTCCTAAAAAGCCAAGAAAT CTTACGCAATTAATAAATTGCATAAATATCTAAGGAAAAAAAATCAAGGAAACGCGGTAACCCCACCATAACCATTGCGT TGTTCACCTCACACCGCGCTTTCCCATTCTCCTTCCTTCCTCCCTCTGCACCTTCCTCACTTCTCACCGCGCCGTTCCTC TCTTCGATTCTCTATCCTTCAGATCCGATTTCCCATCTCATTCTCTCCGTCAATTTCCCTTTTTTTTTCGTTCTTAACGA TCTAGGTTTTCAATTTCCCTCTTTTGACTTGCCACCCTCAATTTTTCCCCAATTTTCTTTATGATTTCTGCGATTGAGGG TTCTGATTTCCTATTCAGATCGGTTTTTCGTTCTGGGTTGCTGTTGAATTCTTGATCCGTTTTTTTTTATTCTTTGGTTT TTGGTTTTCTGGGATTTGATTTATTCGAAGATTATATTAGTCTACGGAAAAAGAAAATACAAAAGATTGTTTCTTTTTCG GTTTTGGCTTGTGGGTTTTTAAGATCATGGTGAATTCTGAAGGATTGGGTGGGTCGGCGAAACAATATGGTGTTACAAAG CCCATATCAATGGCCGGTCCCACTGGTTCTGATTTGCAAAGGACTCTGGAGTTGGAGAAGGTTAGCTTCATTGATTTCTC AATATGTGTGTGTTTATATACCTTGTTTATGAATCAATTTTGCTGATAAATTCTTTGCTGGTTGTGCAAGTTTGTTGTTG ATTCAGGGCTTTATGAAAGCAGGGAGGAAGCTTCCAAGAGAGAAGAAGTTCTTCACCGACTCGGACAGGTAGCAAGAGAA TCATAGAAATAGAGAGATCATGTGTTTTCTTTGGATTAGTATAATTGTTTGACTATGGCAATTTGTGTTAGGATACCAAT ATTGATTATGGAGGCAAACTAAGAGGTATAGGGCTAAATATGGAACCATATGTTTGAATTGATCAGCATGGATGTTTTTT TAATTGTGGCACATGTGAGCTTAGTCTAATTGTGTTATTGTATGCTAGTTCAATCAATATCATCGTTCAGAGTGATTAGA TACTGGCTTTTAATCTTTTATCATTTGAAGAAGCTATTTTGTTTCCCTGTCCCAGGATGTTGCATGGCATTGATTGATTG TTATTTAGAAATTAAGCATGAGAGTATTACAATGGATGAGTGGAGACAAGATCGGATCAGGAATGGAAGTATTAGAGAAA AAGTTGCAATAGCATTTATTGTGTGAAATGGTAGAGGCCGCTTGCCGTAGGGGGTTGGGCATGTTTAGAAAAGACATGTA GAGGCCCTTATAAGGAGTGTAGATCAGATAAACGAAAATCCTATAGTTAGTGGTAGAGGGGGATTAAGGGAAAAATTGAG TTAAATCCATAGTTATCGATCGCGCAGAATAGCGGCGCGATAGCGCTGTCGCGTCGCGGCGGTTCCCCGCGATTCAGATC TGATCGCGTCGCGGAATGGAGTCGCAGCCGTCGCGGGTGGGATCACGGGTCAAATCGCGTTGCTCCAGGCTGAAGATGGG TCGGATCCAAGGAAAATCCCCAAATTGCCCTTAAAATTATAAAATTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCTC TCTTAATAAGTGAAACGCGCGTTTCACTCTTCTTCTTCTACGCGTTTCTTCTTCCTTCAGCTCAGCCACCTTCGATCAGA AGTCCAGAACCCATGGCCACGACCCAATCTGACAAGCACCGTCCAGGCTCCGGCGACCACCACCCCTGTTTCCCTTGGGC CTCTGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTATTCCTCTATTTTTCTTTCCTTTCTTTTCCTTCTTATTTATT ATTCTGTTCTCAAACATACTTCTCCAGTTCTCCTCCTCTAGTAGTCCTCTCTTCTCTATCATTTCATCATGTTATGAATT TGAAGTTATATTTATCACTTTTTAGTAATTATATGTATATATTAATATTAATTATATAATATTATATGTGAAAAATCAAA ATAGCAGTCATCCCGCTATCCCGCTATCCCACTTTTGGGGTCGGCCGCTACGCGCCGCGATCCGGGATTGACTACTATGG TTAAATCATGACAAGGATTTCATTTTAAGTGGTCTGTGCTGTCACTAGAAAAGATTTGCGATATAGGATATTATGGCATT TTTTTCCTATTTAGCTGACCCATTCTAGTGGGAAGAGTTTTTGCTGTTGTGTCCTGCCGGTAGTAATTGTCATGAGTGTG ATTGAACTCACCGTGTTTCTTTATTATGCATCACTAAAACGTGTAGAACTGATCTACTCTATCTATCCAGGACCCACACA GCCTTCAGGTTAAGTTTTGCTAATAATTTGTTTTCTTTATTTCAGGTAGTCAAAGATTGGGTGAAGCAACTTACCCGCAT AAGAGGATACACTGATCAAATGGTTGAAGATGCAAATGCTGTCATTTTCACTTTTGGTTCTTATCGCCTTGGTGTGAGTT TGCTTGCCCCTTTGTTTGACATTGACATGTTCATGTTTTGATTTATTGTTGGTGAAGTATACAGTAGTGGATCTTTCTAC ACTGTTCTGGGAATATAGTAATCGAGGGATACTAAAAATTTTCTCCAGTCAGTCTTCACAATATTTGCTGTATTTGCTGT TTTATTTAATTAAGCCCTTTCTTTTTAAATGTTGTGTACTGCAGGTTCATGGGCCTGGAGCTGACATAGACACTTTGTGC ATTGGGCCGTCCTATATAAACCGGGATGTATGTTGATAGAGAATTTTTTTTGAAGTTCGCTTCATCAATTCATTTTTATT TTTCGTGTCTGATATCTGATCTTTCATATTTTTTCGTCAGGATGATTTTTTCTACACATTGCATGATATCCTAGCTAGCA TGGAAGAAGTTACAGAACTGCAACCAATTCCAGATGCTCATGTCCCAGTGATGAAATTTAAGTTTGATGGAATATCAATT GACCTACTTTACGCAAGTGTTTCCCGCTTGATTGTACCGGAAGTAAGTGAGCCATTTTTTACTTACTAATTTATAATACG GGCAAGGTGAATCTTAAATGGGTTTTGATTCTTCAGTTTGTTTCAAATGAATCTTTTAGTGCTAAAACTTGCTTGCTGAT TTTCAGTATCCTTCTTAATACACTATTGGAAACATGTTGTGTGGATGTTACTTTTCAAATGTTCTTTGTATTTAGTTGGT CTTGATGTAATTAGGGGTCCGAAGTTTAACTCTATCTGTGTGCTAGTTACCTGTATCATGTTTTTGTTTTCGATTATGTC ATGTATTTTTTTGGAATTTTGTTTTGTTTCCTGTTTATGAACAGGACTTAGACATATCCGATGTCTCTGTTCTACACAAT GTTGACGAGCCTACTGTTCGAAGTTTGAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGGT ATTTTTTATTGTTTGGTGCTTTTTTTCTTTCTTCGTGAAGTTGTCTATTTTTTTATATTATGTGTCTCAATTTTTTGAAC TTCTCTTTTGATTATAATATAGCATTTTCGAACCACACTTTGTTGCTTGAAGTTTTGGGCTAAAAGGCGAGGCGTGTATT CCAACGTAAGTGATCCTCTCCTCCCCAAAACAAATCATCTTATATGTCATTTGTTTGCTTTGAGTATCGACTGATACTGT TAATGGCTAGTTGAAAACACATTCCTGTTGTTTTTTTATATGTTCATTTTCAGGTGACAGGTTTTCTCGGCGGTGTTAAC TTGGCCCTTCTTGTAGCTCGAGTTTGCCAGTTGTATCCAAATGCAGTTCCAAGCATGCTTGTCTCTCGATTCTTTAGGGT TTACACCCAGTGGCGGTGGCCAAATCCTGTCATGTTATGTCCAATAGAGGAGAATGAGCTAGGGTTTTCTGTATGGGATC CTCGTAGAAATCCTCGTGATAGAACCCATCACATGCCAATCATTACTCCTGCCTATCCATGCATGAACTCTAGTTATAAT GTTTCTACAAGCACACTTCGTGTCATGATGGAGCAGTTCCAATTTGGCAACATGATCTGCGGGGTAATAATTACTCTTGT TGAGTTTGCTAGAAATGTTTTGGAGATTAATACCCTTTTGCCATTTATAATTGATGCCTATCCTTTTGTTGAACAAACCC AGGAAATTGAACTGAACAAAAATTGTTGGAGTGCGCTATTTGAGCCATACATTTTCTTTGAAAGCTATAGAAACTATTTG CAAGTTGACATAATTGCTGCTGATGTTGATGACTTGCGCTCTTGGAAAGGTTGGGTGGAATCTCGCCTTCGACAGCTGAC TTTAATGGTACGTTCATTCATTTACTGTGGCAAAATTAGGACAAATTTTAAGGGTTCTTTACATTATGATTTATACAAAC TGTGAGGATGGACATGAACTTCATTTTTTAGTGCATCAGTTGTTGGGTTTGGATTTTGTTTGCAGATTGAGCGTGACACT TTCGGGAAGTTGCAGTGCCATCCTAATCCTCATGAGTATGTTGACACGTCAAAGCAGTGCGCACATTGTTCTTTCTTTAT GGGTTTGCAGAGGAAGCAAGGGGAGGTTGTTCAAGAAGGCCAGCAATTTGATATACGTGGGACTGTTGAGGAATTTAGAC ATTCAGTTAACATGTACAATTTTTGGAAACCGGGGATGGACATGTATGTTTCTCACGTTCGTAGAAGACAAATCCCATGC TATGTGTTTCCTGATGGTTACAAACGACCTCGACCACCAAAGCCAACATCACAGCTGGATATTTCTCCAAAATCTTCTCA TGAAGATGAGGTTTCTGGGTCTGAACATAGTGAGAGAAACCATAAGAGGAAGTATGACAAGGTAGGTGTGAAGCAGGATG GTATACTTAAGAAGCATTCTACCAGTCCTCCTGTGAATAGCTTGAGTAGACCCAACTTGTGCCAAGGTCTTGGTGATTTG TCTGTTGATGCTGTATCTCATAGTCCAGAGTTGAGAAATGTGGAGAGCCTGTCCAACAGTGGGCAAGATGATTTGGGTAG AACAGTGTCTCCTGAATCTGAACCTGAATGCGCCTCAAATTCTAGTGTGATTACATCAAGTGATGGTGGTTTTTCTGAAG ACATGGGTTCTGTATCAGTGGCAGGTTATGTTGAGGATGGCACCAGGGGTGTTGAGGTGACGATCAATGGCAGGTTTGAG GGTACCACTTTTGGAAGAGATTTTGTCACTCCTGTGAAAAATACAGTGCCGAGTGGAAATGGAGCATTACAAGACACGGT ACAGGAACAGTTGGAGGTTTTAGCTTTCAATTCCTTTTCAAGCTTTTATAATATCTCTTTCTCTTTTCCTTTTTGATTGA CTTGATATATTTCTCCTGTTGTCTATTTAGCAAGTTCTTGCCCGTTAGTCAGCTCTTATTTGCCTTTTAGTGTACTGATG TGCAAGGTTTTCCGTGAAGCACTGGAAAGCCAAAATGAAATGATTTTATAGCTTCTGTTGATGCCTGAAATTTTCACAAA TTTTGACTGACCTATATTGCATAGGTTTTATTAGCTCGTCACAGTTGCTGTATTGTCTTAGTTTAAGACTTGGGTGCAAC TGCGTGTGTTAAAAGCTTCGGGCATCTATTTTTATGACATCCCAATTGTTTTGTTGTCTTGGCTTATCATGGCAATTTGG CAATTTCCGAGTACTGACCATATACCTGTCTGTTTTTTTTGGGCTTTATTCTGAAAAGCCAAATGCAGTGCTAGGGACGA TTCTTGATTCTAACGGAGGAGTTCACTCAGAAGTGGTGCAAAACCCGATGATAAGGCATGTTCTTGTTTAATAATTGTCG TTTTTAGAGCTTGTTTGCATGTATTTTGTCTTTATGCTGTCTCTTCTCTTGTGCTTTGATCTATAACAGTAGACTGAGCG TAGCATCGACGGTGTGACATACAAGTAGGACTAGATGACAATGTCGGGAAATGGACACATCTCACAGTGGAGAAAGAGGA GAAAGCCAGCAATACTGGTAAGTATCAACTTAAATGGTGGCTTCATTTTGCTAATTTTTTTCAGGCTTGCTTGCTTGATC ATTCAAGCTTGCAAATTGGAACTGATTGGCATTAAACTAAAGAGCTCGTGGGACCTGGGATTTCCATTGTACAGTTCGCA AATTTTGTGCATTATGGTGTCTGTTGACTCTGTACTAACTTCAATGGAGTTTGTTAGGATTATCTCTGAACCTTAGTGGG AATGGCTTCTGATGCACTTTGCTATTGTTGACCTTTAGGGTTTTTTCTTTTTTTTTCTTTTTCTTTTTAGAGGGTGGTGG TGTTGGTTAGGTGAGGGCAGTGTTGGCTAGTGTTTGTTTTCTCTTGTAAGTTCAGTTATGAGCTTTGCACTGATTGCTGT ACTCCTTTTAAGAGGTTTTCGTATGAACTGAACCGTGATATGACAACTACAATCTCAACCTTGTGTCTATGCTTCTTTTT CTTTTTTTGAATGGATCCTTCATTGAATTAAGAAGAAACAAACATAGAAGTCAATATATCAGCGTTAATAATAGACGGGC ATAGTTAATAATAGACGGGCATAGGAACCTCTTCCGCCAAAACTTAATTAGCAAAGGAATTGTTCATGACTAAGTAATTT GTCGCAGAATTACCGCTCCTATGGATTAAAGAAAGACCAAAATGATAAAAAACGAATGCAAAAGATTGACAATCTTGAAT AACTGAAACTAATTAAGATCCACTCCAAGGTTTCTTCACCCTCAAGAGGGCAGCAAAGAGCCTCCGCAAGAACAGGAGAT AACTTACGAAGAGGGCAGCAGCCAACACCTCTCGAGAGCTATCCCTCGCAGCCATCCCAGACCAGCATGCCATCAAAACA ATTACAAACCTGGTCGCACAATATGGGTATATCTAGTATGTAATCATGTTTTACATTAAAATATGTTGTTTGGAAAATGT GCAGAATTTTAAAAATGGTAGATTTTGTTGGGGGCAGTTAAACTTGATTGCATAATGCAGCAGAGAACTTTGAACAACGC TTGCGCAGAAAGAAATTGTAATGTTT 

CDS sequence (LotjaGi3g1v0371900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGAATTCTGAAGGATTGGGTGGGTCGGCGAAACAATATGGTGTTACAAAGCCCATATCAATGGCCGGTCCCACTGG TTCTGATTTGCAAAGGACTCTGGAGTTGGAGAAGTTTGTTGTTGATTCAGGGCTTTATGAAAGCAGGGAGGAAGCTTCCA AGAGAGAAGAAGTTCTTCACCGACTCGGACAGGTAGTCAAAGATTGGGTGAAGCAACTTACCCGCATAAGAGGATACACT GATCAAATGGTTGAAGATGCAAATGCTGTCATTTTCACTTTTGGTTCTTATCGCCTTGGTGTTCATGGGCCTGGAGCTGA CATAGACACTTTGTGCATTGGGCCGTCCTATATAAACCGGGATGATGATTTTTTCTACACATTGCATGATATCCTAGCTA GCATGGAAGAAGTTACAGAACTGCAACCAATTCCAGATGCTCATGTCCCAGTGATGAAATTTAAGTTTGATGGAATATCA ATTGACCTACTTTACGCAAGTGTTTCCCGCTTGATTGTACCGGAAGACTTAGACATATCCGATGTCTCTGTTCTACACAA TGTTGACGAGCCTACTGTTCGAAGTTTGAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGC ATTTTCGAACCACACTTTGTTGCTTGAAGTTTTGGGCTAAAAGGCGAGGCGTGTATTCCAACGTGACAGGTTTTCTCGGC GGTGTTAACTTGGCCCTTCTTGTAGCTCGAGTTTGCCAGTTGTATCCAAATGCAGTTCCAAGCATGCTTGTCTCTCGATT CTTTAGGGTTTACACCCAGTGGCGGTGGCCAAATCCTGTCATGTTATGTCCAATAGAGGAGAATGAGCTAGGGTTTTCTG TATGGGATCCTCGTAGAAATCCTCGTGATAGAACCCATCACATGCCAATCATTACTCCTGCCTATCCATGCATGAACTCT AGTTATAATGTTTCTACAAGCACACTTCGTGTCATGATGGAGCAGTTCCAATTTGGCAACATGATCTGCGGGGAAATTGA ACTGAACAAAAATTGTTGGAGTGCGCTATTTGAGCCATACATTTTCTTTGAAAGCTATAGAAACTATTTGCAAGTTGACA TAATTGCTGCTGATGTTGATGACTTGCGCTCTTGGAAAGGTTGGGTGGAATCTCGCCTTCGACAGCTGACTTTAATGATT GAGCGTGACACTTTCGGGAAGTTGCAGTGCCATCCTAATCCTCATGAGTATGTTGACACGTCAAAGCAGTGCGCACATTG TTCTTTCTTTATGGGTTTGCAGAGGAAGCAAGGGGAGGTTGTTCAAGAAGGCCAGCAATTTGATATACGTGGGACTGTTG AGGAATTTAGACATTCAGTTAACATGTACAATTTTTGGAAACCGGGGATGGACATGTATGTTTCTCACGTTCGTAGAAGA CAAATCCCATGCTATGTGTTTCCTGATGGTTACAAACGACCTCGACCACCAAAGCCAACATCACAGCTGGATATTTCTCC AAAATCTTCTCATGAAGATGAGGTTTCTGGGTCTGAACATAGTGAGAGAAACCATAAGAGGAAGTATGACAAGGTAGGTG TGAAGCAGGATGGTATACTTAAGAAGCATTCTACCAGTCCTCCTGTGAATAGCTTGAGTAGACCCAACTTGTGCCAAGGT CTTGGTGATTTGTCTGTTGATGCTGTATCTCATAGTCCAGAGTTGAGAAATGTGGAGAGCCTGTCCAACAGTGGGCAAGA TGATTTGGGTAGAACAGTGTCTCCTGAATCTGAACCTGAATGCGCCTCAAATTCTAGTGTGATTACATCAAGTGATGGTG GTTTTTCTGAAGACATGGGTTCTGTATCAGTGGCAGGTTATGTTGAGGATGGCACCAGGGGTGTTGAGGTGACGATCAAT GGCAGGTTTGAGGGTACCACTTTTGGAAGAGATTTTGTCACTCCTGTGAAAAATACAGTGCCGAGTGGAAATGGAGCATT ACAAGACACGCCAAATGCAGTGCTAGGGACGATTCTTGATTCTAACGGAGGAGTTCACTCAGAAGTGGTGCAAAACCCGA TGATAAGGCATGTTCTTGTTTAA 

Protein sequence (LotjaGi3g1v0371900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVNSEGLGGSAKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASKREEVLHRLGQVVKDWVKQLTRIRGYT DQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGIS IDLLYASVSRLIVPEDLDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLCCLKFWAKRRGVYSNVTGFLG GVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPRDRTHHMPIITPAYPCMNS SYNVSTSTLRVMMEQFQFGNMICGEIELNKNCWSALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMI ERDTFGKLQCHPNPHEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYVSHVRRR QIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEHSERNHKRKYDKVGVKQDGILKKHSTSPPVNSLSRPNLCQG LGDLSVDAVSHSPELRNVESLSNSGQDDLGRTVSPESEPECASNSSVITSSDGGFSEDMGSVSVAGYVEDGTRGVEVTIN GRFEGTTFGRDFVTPVKNTVPSGNGALQDTPNAVLGTILDSNGGVHSEVVQNPMIRHVLV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 577 577 0.0
PANTHER 1 577 577 0.0
SUPERFAMILY 14 208 195 9.81E-51
Gene3D 15 357 343 9.6E-150
Pfam 15 359 345 4.5E-106
Gene3D 47 203 157 9.6E-150
CDD 54 209 156 9.01728E-30
Pfam 85 162 78 1.9E-8
SUPERFAMILY 210 359 150 6.54E-62
Gene3D 361 477 117 2.3E-19
Pfam 362 419 58 7.2E-9
SUPERFAMILY 362 488 127 9.02E-34
MobiDBLite 488 554 67 -
MobiDBLite 507 538 32 -
MobiDBLite 576 615 40 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Molecular function Polynucleotide adenylyltransferase activity Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.
Molecular function Nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
Biological process RNA 3'-end processing Any process involved in forming the mature 3' end of an RNA molecule.
Biological process RNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0371900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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