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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003661
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 79 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.474s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0046839.1
n.a. PREDICTED: phytochrome type A-like [Glycine max] gi|356572880|ref|XP_003554593.1| chr0 15593051 15597615 +
2 domain predictions
2 GO terms
Lj0g3v0108729.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr0 47040790 47047766 +
5 domain predictions
2 GO terms
Lj0g3v0108739.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr0 47040916 47047707 +
5 domain predictions
2 GO terms
Lj0g3v0163479.1
n.a. PREDICTED: ethylene receptor 2-like [Cicer arietinum] gi|502115883|ref|XP_004495309.1| chr0 77304936 77309225 +
4 domain predictions
2 GO terms
Lj0g3v0191959.1
n.a. chloroplast sensor kinase [Arabidopsis thaliana] gi|42572021|ref|NP_974101.1| chr0 93802302 93804302 -
2 domain predictions
2 GO terms
Lj0g3v0272749.1
n.a. PREDICTED: histidine kinase 1-like [Glycine max] gi|356561130|ref|XP_003548838.1| chr0 141331066 141337466 +
5 domain predictions
2 GO terms
Lj0g3v0272749.2
n.a. PREDICTED: histidine kinase 1-like [Glycine max] gi|356561130|ref|XP_003548838.1| chr0 141333876 141337466 +
2 domain predictions
2 GO terms
Lj0g3v0302209.1
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr0 157184005 157189594 +
5 domain predictions
2 GO terms
Lj0g3v0327979.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356512385|ref|XP_003524900.1| chr0 171441705 171447984 -
5 domain predictions
2 GO terms
Lj1g3v1798710.1
n.a. Hybrid signal transduction histidine kinase K [Medicago truncatula] gi|357465939|ref|XP_003603254.1| chr1 21715696 21721815 +
5 domain predictions
2 GO terms
Lj1g3v4865380.1
n.a. PREDICTED: ethylene response sensor 1-like isoform X1 [Cicer arietinum] gi|502112644|ref|XP_004494397.1| chr1 59041645 59046222 +
5 domain predictions
2 GO terms
Lj1g3v5020730.1
n.a. Ethylene receptor [Medicago truncatula] gi|357512375|ref|XP_003626476.1| chr1 61035843 61040666 -
5 domain predictions
2 GO terms
Lj1g3v5020740.2
n.a. Ethylene receptor [Medicago truncatula] gi|357512375|ref|XP_003626476.1| chr1 61036440 61040602 -
5 domain predictions
2 GO terms
Lj2g3v0136400.1
n.a. histidine kinase 2 [Lotus japonicus] gi|113911568|gb|ABI48270.1| chr2 2426388 2431144 +
5 domain predictions
2 GO terms
Lj2g3v1681040.1
n.a. PREDICTED: histidine kinase 1-like isoform X2 [Cicer arietinum] gi|502161397|ref|XP_004512150.1| chr2 26074727 26082256 -
5 domain predictions
2 GO terms
Lj2g3v1681040.2
n.a. PREDICTED: histidine kinase 1-like isoform X1 [Cicer arietinum] gi|502161395|ref|XP_004512149.1| chr2 26074727 26084598 -
5 domain predictions
2 GO terms
Lj2g3v2925240.1
n.a. PREDICTED: histidine kinase CKI1-like [Cicer arietinum] gi|502118202|ref|XP_004496150.1| chr2 38181600 38186040 +
3 domain predictions
2 GO terms
Lj2g3v3338860.1
n.a. PREDICTED: histidine kinase 2-like [Glycine max] gi|356553458|ref|XP_003545073.1| chr2 42466717 42476518 +
3 domain predictions
2 GO terms
Lj2g3v3338860.2
n.a. PREDICTED: histidine kinase 2-like [Glycine max] gi|356553458|ref|XP_003545073.1| chr2 42467555 42476518 +
5 domain predictions
2 GO terms
Lj3g3v0461750.1
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr3 4978634 4984353 -
5 domain predictions
2 GO terms
Lj3g3v0461750.2
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr3 4978634 4984648 -
5 domain predictions
2 GO terms
Lj4g3v0210330.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356512385|ref|XP_003524900.1| chr4 2652352 2655316 -
5 domain predictions
2 GO terms
Lj4g3v2265030.1
n.a. phytochrome b [Lotus japonicus] gi|121309520|dbj|BAF44083.1| chr4 31439564 31445894 +
4 domain predictions
2 GO terms
Lj4g3v2295890.1
n.a. PREDICTED: phytochrome E-like isoform X2 [Cicer arietinum] gi|502086749|ref|XP_004488314.1| chr4 32020888 32022173 +
3 domain predictions
2 GO terms
Lj4g3v3113820.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr4 41776257 41783546 -
2 domain predictions
2 GO terms
Lj4g3v3113820.3
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr4 41776257 41782025 -
5 domain predictions
2 GO terms
Lj4g3v3113830.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr4 41776264 41783055 -
5 domain predictions
2 GO terms
Lj5g3v0473540.1
n.a. PREDICTED: histidine kinase 5-like [Cicer arietinum] gi|502125167|ref|XP_004498825.1| chr5 4717697 4725814 +
5 domain predictions
2 GO terms
Lj5g3v0473540.2
n.a. PREDICTED: histidine kinase 5-like [Cicer arietinum] gi|502125167|ref|XP_004498825.1| chr5 4717697 4725814 +
5 domain predictions
2 GO terms
Lj5g3v0473540.3
n.a. PREDICTED: histidine kinase 5-like [Cicer arietinum] gi|502125167|ref|XP_004498825.1| chr5 4719347 4722437 +
5 domain predictions
2 GO terms
Lj5g3v1329790.1
n.a. PREDICTED: protein EIN4-like [Glycine max] gi|356574871|ref|XP_003555567.1| chr5 20506148 20509847 +
5 domain predictions
2 GO terms
Lj5g3v1533480.1
n.a. phytochrome A [Lotus japonicus] gi|477504379|dbj|BAN14699.1| chr5 22502927 22510099 -
2 domain predictions
2 GO terms
Lj6g3v0056680.1
n.a. PREDICTED: ethylene receptor 2-like [Cicer arietinum] gi|502115883|ref|XP_004495309.1| chr6 832619 836839 -
3 domain predictions
2 GO terms
Lj6g3v1093490.1
n.a. PREDICTED: phytochrome E-like [Glycine max] gi|356532946|ref|XP_003535030.1| chr6 13394709 13400674 -
3 domain predictions
2 GO terms
LotjaGi1g1v0008500.1
n.a. Histidine kinase; TAIR: AT5G35750.1 histidine kinase 2; Swiss-Prot: sp|Q9C5U2|AHK2_ARATH Histidine kinase 2; TrEMBL-Plants: tr|A0A023W2C6|A0A023W2C6_LOTJA Histidine kinase 2; Found in the gene: LotjaGi1g1v0008500 LjG1.1_chr1 1114796 1127418 -
4 domain predictions
2 GO terms
LotjaGi1g1v0060100.1
n.a. Histidine kinase; TAIR: AT2G47430.1 Signal transduction histidine kinase; Swiss-Prot: sp|O22267|CKI1_ARATH Histidine kinase CKI1; TrEMBL-Plants: tr|V7BJF4|V7BJF4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0060100 LjG1.1_chr1 8368323 8373712 -
4 domain predictions
2 GO terms
LotjaGi1g1v0373800.1
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|A3BE68|OHK1_ORYSJ Probable histidine kinase 1; TrEMBL-Plants: tr|V7AWB7|V7AWB7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0373800 LjG1.1_chr1 85209589 85215639 +
4 domain predictions
2 GO terms
LotjaGi1g1v0762500.1
n.a. Ethylene receptor; TAIR: AT2G40940.1 ethylene response sensor 1; Swiss-Prot: sp|Q38846|ERS1_ARATH Ethylene response sensor 1; TrEMBL-Plants: tr|A0A151S8B3|A0A151S8B3_CAJCA Ethylene receptor; Found in the gene: LotjaGi1g1v0762500 LjG1.1_chr1 133514685 133519558 +
4 domain predictions
2 GO terms
LotjaGi1g1v0762500.2
n.a. Ethylene receptor; TAIR: AT2G40940.1 ethylene response sensor 1; Swiss-Prot: sp|Q38846|ERS1_ARATH Ethylene response sensor 1; TrEMBL-Plants: tr|A0A151S8B3|A0A151S8B3_CAJCA Ethylene receptor; Found in the gene: LotjaGi1g1v0762500 LjG1.1_chr1 133515378 133519076 +
4 domain predictions
2 GO terms
LotjaGi1g1v0786100.1
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135852775 135857792 -
4 domain predictions
2 GO terms
LotjaGi1g1v0786100.2
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135853281 135857597 -
4 domain predictions
2 GO terms
LotjaGi1g1v0786100.3
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135853494 135857299 -
4 domain predictions
2 GO terms
LotjaGi2g1v0003400.1
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1439325 1457042 -
4 domain predictions
2 GO terms
LotjaGi2g1v0003400.2
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1439325 1457042 -
4 domain predictions
2 GO terms
LotjaGi2g1v0003400.3
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456175 -
4 domain predictions
2 GO terms
LotjaGi2g1v0003400.4
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456800 -
4 domain predictions
2 GO terms
LotjaGi2g1v0003400.5
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456800 -
4 domain predictions
2 GO terms
LotjaGi2g1v0003400.6
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1443526 1456488 -
4 domain predictions
2 GO terms
LotjaGi2g1v0003400.7
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1448519 1456009 -
4 domain predictions
2 GO terms
LotjaGi2g1v0003400.8
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1448519 1456009 -
4 domain predictions
2 GO terms