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Lj0g3v0046839.1

Overview

Field Value
Gene ID Lj0g3v0046839
Transcript ID Lj0g3v0046839.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: phytochrome type A-like [Glycine max] gi|356572880|ref|XP_003554593.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF000084
1 1130 1130 0
IPR012129
MobiDBLite
mobidb-lite
1 28 28 – –
MobiDBLite
mobidb-lite
46 75 30 – –
Pfam
PF08446
76 191 116 3.70E-35
IPR013654
SUPERFAMILY
SSF55785
83 193 111 5.23E-23
IPR000014
PANTHER
PTHR24423
117 548 432 0 –
PANTHER
PTHR24423:SF519
117 548 432 0 –
PRINTS
PR01033
139 161 23 2.40E-106
IPR001294
SUPERFAMILY
SSF55781
204 403 200 1.50E-52
IPR029016
Gene3D
G3DSA:3.30.450.40
221 264 44 8.10E-05
IPR029016
Pfam
PF01590
224 407 184 1.70E-32
IPR003018
ProSiteProfiles
PS50046
224 397 174 62.835
IPR016132
SMART
SM00065
224 417 194 3.50E-10
IPR003018
PRINTS
PR01033
239 258 20 2.40E-106
IPR001294
Gene3D
G3DSA:3.30.450.40
303 402 100 8.10E-05
IPR029016
PRINTS
PR01033
324 345 22 2.40E-106
IPR001294
SUPERFAMILY
SSF55781
415 595 181 6.67E-58
IPR029016
Pfam
PF00360
420 595 176 3.90E-58
IPR013515
PRINTS
PR01033
437 457 21 2.40E-106
IPR001294
PRINTS
PR01033
522 541 20 2.40E-106
IPR001294
PRINTS
PR01033
555 573 19 2.40E-106
IPR001294
ProSiteProfiles
PS50112
623 693 71 18.988
IPR000014
PANTHER
PTHR24423
623 741 119 0 –
PANTHER
PTHR24423:SF519
623 741 119 0 –
SMART
SM00091
625 691 67 4.30E-07
IPR000014
Pfam
PF00989
626 740 115 1.10E-21
IPR013767
PRINTS
PR01033
626 642 17 2.40E-106
IPR001294
Gene3D
G3DSA:3.30.450.20
627 754 128 1.30E-16 –
SUPERFAMILY
SSF55785
629 735 107 2.88E-16
IPR000014
TIGRFAM
TIGR00229
630 746 117 3.00E-10
IPR000014
CDD
cd00130
634 740 107 2.73E-09 –
PRINTS
PR01033
645 660 16 2.40E-106
IPR001294
PRINTS
PR01033
718 735 18 2.40E-106
IPR001294
PRINTS
PR01033
738 758 21 2.40E-106
IPR001294
SMART
SM00091
755 825 71 0.0025
IPR000014
Pfam
PF00989
756 878 123 1.20E-21
IPR013767
ProSiteProfiles
PS50112
756 808 53 13.194
IPR000014
CDD
cd00130
767 878 112 1.86E-05 –
SUPERFAMILY
SSF55785
770 876 107 2.79E-09
IPR000014
Gene3D
G3DSA:3.30.450.20
773 878 106 9.90E-10 –
PANTHER
PTHR24423:SF519
878 1129 252 0 –
PANTHER
PTHR24423
878 1129 252 0 –
SMART
SM00388
901 965 65 7.50E-04
IPR003661
ProSiteProfiles
PS50109
907 1126 220 33.214
IPR005467
Gene3D
G3DSA:3.30.565.10
967 1119 153 4.90E-14
IPR003594
SUPERFAMILY
SSF55874
968 1115 148 2.90E-10
IPR003594
Pfam
PF02518
1012 1122 111 1.50E-07
IPR003594
SMART
SM00387
1012 1124 113 1.70E-09
IPR003594
CDD
cd00075
1017 1120 104 6.27E-10 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000155
Molecular function Phosphorelay sensor kinase activity Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0007165
Biological process Signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
Subterm of
Part of
GO:0009584
Biological process Detection of visible light The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.
Subterm of
GO:0009585
Biological process Red, far-red light phototransduction The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
Subterm of
Part of
GO:0009881
Molecular function Photoreceptor activity The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation.
Subterm of
GO:0017006
Biological process Protein-tetrapyrrole linkage The covalent linking of a tetrapyrrole to a protein.
Subterm of
GO:0018298
Biological process Protein-chromophore linkage The covalent or noncovalent attachment of a chromophore to a protein.
Subterm of
GO:0042803
Molecular function Protein homodimerization activity Interacting selectively and non-covalently with an identical protein to form a homodimer.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0046839.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0046839.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.