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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0786100 |
| Transcript ID | LotjaGi1g1v0786100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135853281..135857597) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTTGTTTTGTTCTTCCTAGATTAGATTTTTTGCACCGATTTCACGCTCTGCTTTATCAATCACACACAGATTTGC CGTGACTTCCAAGGAAGAACAACAACAACAAGATCATTCAAATTCAATCACGGTTTCTTCTCAGGTTTGAAACAAACAAA CACAAACTTGAAACTGTTCTAGTTTTGGAACATAACTTAGATCTAATCTTGTTAACTTCAGCATCCATGGTGGTTCAGCT TTTGATTTTGGAAGATTGATTATTCATGGCAAAAGGGTCACTGTTGTTTTTGCTGTTTCTCTCTGTTTCTACTCTGTTTC TCTCTGTTTCTGGAATAGACGTTGAATATGCACACTGCAACTGCGATGACGATGAAGGGTTTTGGAGCATACAGAGCCTC CTTGTTTCCCAAAAAGTCAGCGATTTTTTCATCGCCATTGCATATTTCTCAATACCACTTGAGCTGCTTTACTTTGTTAG CTACTCTAATGTTCCATTCAAATTGGTTTTTCTTCAGTTTGTTGCCTTTATAGTACTTTGCGGTTTGACCCATTTGCTCA ATGCCTATACCTATTATGGCCCTCATTCCTTTCAGATGTTTCTCTCACTCACAGTTGCTAAATTCTTCACTGCTCTTGTT TCTTGTGCTACTGCAATCACCTTTCCTACCCTGATTCCCCTGCTTCTGAAGATCAAGATTAGGGAATTGTTTTTGAGGCA GAATGTGTTGGAATTGGGACAAGAGGTTGGGATGATGAAGAAGCAAAAGGAAGCTAGCTGGCATGTTAGGATGCTCACTC GCGAGATTAGGAAGTCTTTGGATAAACATACTATATTGTACACTACTTTGGTTGAGCTTTCTAAGGCATTGGAGTTGCAC AATTGTGCAGTTTGGATGCCTGATGAGGACAGGCGAGTGATGCATTTGACTCATGAGCTGAAACCGAGCTCGGCTAAGAA TTTTCTTGATTCTATCCCTGTGAATGATTTGGATGTGTTGGAGATTAGAAAGAGCAAAGGGGTGCGGATTTTGAGGCCTG ATTCTGCATTGGGAGCTGCAAGTAATGGTGGGTCTGGGGACTCTGGTAATGGTGGAGCTGTGGCGGCCATTCGGATGCCG ATACTTCATGTTTCGAATTTCAAAGGAGGGACGCCGGAGTTCATTGAGACATCTTATGCTATTCTGGTTTTGGTTCTTCC AGATTCAAACTCCAGGGCTTGGACCCCCCATGAGATGGAGTTGGTGGAAGTGGTGGCTGACCAAGTGGCTGTAGCACTAT CTCATGCATCTGTTCTTGAAGAGTCTCAGCTAATGAGTCAGAAACTCGCGGAGCAGAACCGTGCTTTGCAACAGGCTCAG AAGAATGCAATGATGGCTAGCTTGGCAAGGAGCTCATTTGAGAAAGTGATGAGCCATGGAATGAGGAGACCTATGCATTC AATTCTGGGATTGCTTTCAATGTTTCAGGAGGATAATATAAGACCTGAGCAGAAGATTATCATTGACACAATGTTGAAAG TTAGCAATTCTCTGTCGCGTTTGATTAATGATGTGATGGAGATTTCAGCAAATGACAAAGGAAGCTTTCGGTTAGAGATG AAGCCTTTCCATCTGCATTACATGTTGAGGGAAGCCTCTTGCATTGCCAAGTGTTTGTGTGTGTATAAAGGCTTTGGCCT TGAAATTGATGTTCAGAGGTCTTTGCCTGATCTTGTAATAGGTGATGAGGCAAGGTCTTTTCAAGTAATTTTGCATATGG TTGGATATTTATTAAACTTGTATGACAGAGGGACTCTCATTTTTCAAGTTTTTCTGGAGAGTGATAATGGGGATAAGGAT GATAGAAGTCTTGGAATATGGAGATCAAGCGTGCAAAATGATTACGCGTATGTAAAATTTAATTTACAGATAACTGGTAA TAGTTCCCATACAGATGAATCAAGTTTAACAAGAAACCATGCTGGTAAGAGGCTCAGCAACATTGAATCTAAGGAGGGCC TGAGCTTCAGCATGTGCAAAACACTAGTGCAGGTTGGTGCATCATTCTTTGTCTTGTTTTTCAAATTTATTTATCAATTT CTCTTAATGGTTGAAGTTATAGACATTATTCCCATATTTAACTGTTTATTAATAAGCACCCCTCCCCCCCTCTTTAGACG TTACACGCTGCTCCATTATTGTATAGAATGTTGATAGTTGGCTGTGGACCTAGGAATTACATTTTATTCTTAGAGTGTGA TTCTTGGTGACAAAATTACCGGTACCCTCAATTATTTGAATAGGTGAATATTCCAATGGGGATTTTTTTAATGTTGTTGG AAATGTGCGAGTGTGATGAAACTGTCAATAAAATTAGGCTGTGGTGGTGTAGTTGTCATATCAGATTTAAGAAATAAATG GGAAAAGTGACTTCCAATCATGAAGCCTTTATTTTATCTTGCTGATCTAGTTTCCTGCAGGATGTTGTTGGGATAAATAT GCATTGTAGTATGGTTTCTTGTATACTGCAACTTGCTGACTATAGATTCCTAGTTTATATCTAGTGGTCAAAGATTCACC TGATAATTGTCTTGTTAATTTTTTTTTCACCGTCTTGTCATTAGGAAGCTATATATATTGTTTCTCGGCTAGTTTGTCGT ACAGGTAGATAAATTGCATCCATTGCAAAGCAATGGAGACTCGTAAGGTGGTGAATGTCAGTGGTCTTCTAAATGCTCAA AGGAGACATCAAATTGGAATATGGTTTGATGTTTAATGTTTTTTTTAATTAAAATATTTTATAAAAAATTTCAGAGTATG AAGTAACTGTAATTGTCATCAAGTTAGAACCATAATTCGGACTATGCCTGTAGGCAAGAATTCAAATGTTCATTAGACAC ACATTGGTGAAAGAATTTCTTCTAGTTATTCATGGAGATAGTCAAAGTACAGCTGAACTGTTAGTCCAAAATTACTGATG ACTAATACTTGACGTGACACTTAACTTTGCACAGATATCTCTGACTGTCTTACAAGTTTCAGCTAATGGGACAAGGGTTT TTCTGTGATAACCCGTAGTTTAATGCCTTTTTCCAGTAAAAAGAAAAGATGCTCTCTTTTCTTATTTATGTCATGTTACA CTTCCCTACATAATAGAAGGTCCTTTCATGTTCATCCCAAGTCTATGATGTATAATACTCTTTTGGGAGCCTTTTCCTGT GTAGTCGGAAATATGGATTATCATATGCATCACTTCAGGTAGGTAATAAATGAATATTGAAAATTTGAAGTAGCAGAAAG GACTGGATAAGAATCAATGTTGTCTTCTTCTTTCACTTGTAAGATCAGTTAGTTTTAAAATTTGAACATGAAAGAGACTC GAATTTGCCCCCTTTCATCAGTTGGATTAGGAGAACAATAAGCTGGTTCATGCTTTTAGTTCTGTATACCCTGAATATTG TTGCCTAAAACTAAAATTTGTTCTACCTTTGCCTATTTGCTGACCATGGGTTGCACAAGCATAATCCTACTGAAATGAGT TCAGCAATGTATAATAGTTTTGTAGTTCTGACTATACAATATGGAATAATATGCAGATGATGCAAGGTAATATCTTGGTT TCACCAAACTCTCACGGTTTAGCACAAGGGATGACACTTCTTCTCAGGTTTCAGATAGGATCAGCACATGGAAGATTCAT TCTTCCTCCTAAAGATTTTTCAAACACACAGTTTAGAGGGCTTAAGGTCGTGTTAGCCGATGATGACAACGTAAACAGGA CTGTGACTAAGAAGCTGCTTGAGAAACTGGGTTGTCAAGTAACTGCTGTTTCATCAGGTCTTGAATGTCTTGCTGCTATA AGTGCTGCCGGTAACTCATTCAAGATCATCCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAG GATACGGAAGTTTCAGAGCAGAAACTGGCCCTTGATCATTGCTCTTACAGCAAGTGCAGAAGAACACATAAAGGAAAGAT GCCTTCAGGTGGGAATGAATGGATTGATTCGAAAGCCTATTCTCCTGCATGAGATAGCAGATGAACTTAGAACGGTTCTG CTACGTGCAGGTGAAAAGTTGTGAACAATGTTAAGCAAGCATCTCAAATTTCTTAGGTTCTTCAAAATTTACTTCTTGAT TCTGACATAGAACCTGGAATTTCTAACATATATACTAGGTTCATTTTGCTAACAATTTTTCTTTTTGATCTTTTAGCCGT ATACTGAATTGTGGGTTTCTACCAGGTGTACGGTACTTCTTGCCACCACTTAACAGATGAATACATGATTCTAAAAA
CDS sequence (LotjaGi1g1v0786100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAAGGGTCACTGTTGTTTTTGCTGTTTCTCTCTGTTTCTACTCTGTTTCTCTCTGTTTCTGGAATAGACGTTGA ATATGCACACTGCAACTGCGATGACGATGAAGGGTTTTGGAGCATACAGAGCCTCCTTGTTTCCCAAAAAGTCAGCGATT TTTTCATCGCCATTGCATATTTCTCAATACCACTTGAGCTGCTTTACTTTGTTAGCTACTCTAATGTTCCATTCAAATTG GTTTTTCTTCAGTTTGTTGCCTTTATAGTACTTTGCGGTTTGACCCATTTGCTCAATGCCTATACCTATTATGGCCCTCA TTCCTTTCAGATGTTTCTCTCACTCACAGTTGCTAAATTCTTCACTGCTCTTGTTTCTTGTGCTACTGCAATCACCTTTC CTACCCTGATTCCCCTGCTTCTGAAGATCAAGATTAGGGAATTGTTTTTGAGGCAGAATGTGTTGGAATTGGGACAAGAG GTTGGGATGATGAAGAAGCAAAAGGAAGCTAGCTGGCATGTTAGGATGCTCACTCGCGAGATTAGGAAGTCTTTGGATAA ACATACTATATTGTACACTACTTTGGTTGAGCTTTCTAAGGCATTGGAGTTGCACAATTGTGCAGTTTGGATGCCTGATG AGGACAGGCGAGTGATGCATTTGACTCATGAGCTGAAACCGAGCTCGGCTAAGAATTTTCTTGATTCTATCCCTGTGAAT GATTTGGATGTGTTGGAGATTAGAAAGAGCAAAGGGGTGCGGATTTTGAGGCCTGATTCTGCATTGGGAGCTGCAAGTAA TGGTGGGTCTGGGGACTCTGGTAATGGTGGAGCTGTGGCGGCCATTCGGATGCCGATACTTCATGTTTCGAATTTCAAAG GAGGGACGCCGGAGTTCATTGAGACATCTTATGCTATTCTGGTTTTGGTTCTTCCAGATTCAAACTCCAGGGCTTGGACC CCCCATGAGATGGAGTTGGTGGAAGTGGTGGCTGACCAAGTGGCTGTAGCACTATCTCATGCATCTGTTCTTGAAGAGTC TCAGCTAATGAGTCAGAAACTCGCGGAGCAGAACCGTGCTTTGCAACAGGCTCAGAAGAATGCAATGATGGCTAGCTTGG CAAGGAGCTCATTTGAGAAAGTGATGAGCCATGGAATGAGGAGACCTATGCATTCAATTCTGGGATTGCTTTCAATGTTT CAGGAGGATAATATAAGACCTGAGCAGAAGATTATCATTGACACAATGTTGAAAGTTAGCAATTCTCTGTCGCGTTTGAT TAATGATGTGATGGAGATTTCAGCAAATGACAAAGGAAGCTTTCGGTTAGAGATGAAGCCTTTCCATCTGCATTACATGT TGAGGGAAGCCTCTTGCATTGCCAAGTGTTTGTGTGTGTATAAAGGCTTTGGCCTTGAAATTGATGTTCAGAGGTCTTTG CCTGATCTTGTAATAGGTGATGAGGCAAGGTCTTTTCAAGTAATTTTGCATATGGTTGGATATTTATTAAACTTGTATGA CAGAGGGACTCTCATTTTTCAAGTTTTTCTGGAGAGTGATAATGGGGATAAGGATGATAGAAGTCTTGGAATATGGAGAT CAAGCGTGCAAAATGATTACGCGTATGTAAAATTTAATTTACAGATAACTGGTAATAGTTCCCATACAGATGAATCAAGT TTAACAAGAAACCATGCTGGTAAGAGGCTCAGCAACATTGAATCTAAGGAGGGCCTGAGCTTCAGCATGTGCAAAACACT AGTGCAGATGATGCAAGGTAATATCTTGGTTTCACCAAACTCTCACGGTTTAGCACAAGGGATGACACTTCTTCTCAGGT TTCAGATAGGATCAGCACATGGAAGATTCATTCTTCCTCCTAAAGATTTTTCAAACACACAGTTTAGAGGGCTTAAGGTC GTGTTAGCCGATGATGACAACGTAAACAGGACTGTGACTAAGAAGCTGCTTGAGAAACTGGGTTGTCAAGTAACTGCTGT TTCATCAGGTCTTGAATGTCTTGCTGCTATAAGTGCTGCCGGTAACTCATTCAAGATCATCCTGTTGGATCTTCACATGC CTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATACGGAAGTTTCAGAGCAGAAACTGGCCCTTGATCATTGCTCTTACA GCAAGTGCAGAAGAACACATAAAGGAAAGATGCCTTCAGGTGGGAATGAATGGATTGATTCGAAAGCCTATTCTCCTGCA TGAGATAGCAGATGAACTTAGAACGGTTCTGCTACGTGCAGGTGAAAAGTTGTGA
Protein sequence (LotjaGi1g1v0786100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKGSLLFLLFLSVSTLFLSVSGIDVEYAHCNCDDDEGFWSIQSLLVSQKVSDFFIAIAYFSIPLELLYFVSYSNVPFKL VFLQFVAFIVLCGLTHLLNAYTYYGPHSFQMFLSLTVAKFFTALVSCATAITFPTLIPLLLKIKIRELFLRQNVLELGQE VGMMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALELHNCAVWMPDEDRRVMHLTHELKPSSAKNFLDSIPVN DLDVLEIRKSKGVRILRPDSALGAASNGGSGDSGNGGAVAAIRMPILHVSNFKGGTPEFIETSYAILVLVLPDSNSRAWT PHEMELVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMASLARSSFEKVMSHGMRRPMHSILGLLSMF QEDNIRPEQKIIIDTMLKVSNSLSRLINDVMEISANDKGSFRLEMKPFHLHYMLREASCIAKCLCVYKGFGLEIDVQRSL PDLVIGDEARSFQVILHMVGYLLNLYDRGTLIFQVFLESDNGDKDDRSLGIWRSSVQNDYAYVKFNLQITGNSSHTDESS LTRNHAGKRLSNIESKEGLSFSMCKTLVQMMQGNILVSPNSHGLAQGMTLLLRFQIGSAHGRFILPPKDFSNTQFRGLKV VLADDDNVNRTVTKKLLEKLGCQVTAVSSGLECLAAISAAGNSFKIILLDLHMPEMDGFEVARRIRKFQSRNWPLIIALT ASAEEHIKERCLQVGMNGLIRKPILLHEIADELRTVLLRAGEKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| PIRSF | 4 | 764 | 761 | 0.0 | ||
| PANTHER | 6 | 759 | 754 | 0.0 | – | |
| PANTHER | 6 | 759 | 754 | 0.0 | – | |
| Phobius | 6 | 19 | 14 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 20 | 23 | 4 | - | – | |
| Phobius | 24 | 53 | 30 | - | – | |
| Phobius | 54 | 73 | 20 | - | – | |
| TMHMM | 54 | 73 | 20 | - | – | |
| Phobius | 74 | 79 | 6 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 80 | 100 | 21 | - | – | |
| Phobius | 101 | 119 | 19 | - | – | |
| Phobius | 120 | 141 | 22 | - | – | |
| Phobius | 142 | 764 | 623 | - | – | |
| Gene3D | 173 | 341 | 169 | 4.9E-9 | ||
| SMART | 186 | 348 | 163 | 8.8E-8 | ||
| Pfam | 188 | 338 | 151 | 2.0E-12 | ||
| SUPERFAMILY | 189 | 341 | 153 | 4.1E-13 | – | |
| Gene3D | 342 | 437 | 96 | 8.0E-17 | – | |
| Coils | 344 | 367 | 24 | - | – | |
| SUPERFAMILY | 359 | 439 | 81 | 6.67E-9 | ||
| SMART | 374 | 439 | 66 | 8.5E-8 | ||
| CDD | 374 | 434 | 61 | 4.47916E-8 | ||
| Pfam | 376 | 438 | 63 | 5.0E-7 | ||
| ProSiteProfiles | 381 | 618 | 238 | 17.329 | ||
| Gene3D | 438 | 618 | 181 | 1.1E-8 | ||
| CDD | 480 | 612 | 133 | 2.16145E-44 | – | |
| Gene3D | 628 | 757 | 130 | 2.1E-36 | – | |
| SUPERFAMILY | 634 | 757 | 124 | 1.57E-33 | ||
| SMART | 638 | 753 | 116 | 5.4E-30 | ||
| ProSiteProfiles | 639 | 757 | 119 | 39.589 | ||
| Pfam | 640 | 752 | 113 | 4.0E-22 | ||
| CDD | 642 | 757 | 116 | 6.80178E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphorelay sensor kinase activity | Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. | ||
| Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. | ||
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Biological process | Response to ethylene | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. | ||
| Molecular function | Ethylene receptor activity | Combining with ethylene and transmitting the signal in the cell to initiate a change in cell activity. | ||
| Molecular function | Ethylene binding | Interacting selectively and non-covalently with ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator. |
Expression pattern of LotjaGi1g1v0786100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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