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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006162
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.594s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0205559.1
n.a. Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| chr0 102262923 102270182 +
2 domain predictions
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Lj0g3v0205569.1
n.a. n.a. chr0 102265269 102271500 -
2 domain predictions
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Lj0g3v0205569.2
n.a. n.a. chr0 102265269 102271500 -
2 domain predictions
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Lj0g3v0205569.3
n.a. n.a. chr0 102265269 102271500 -
2 domain predictions
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Lj1g3v2840250.1
n.a. acyl carrier protein [Arachis hypogaea] gi|268527775|gb|ACZ06073.1| chr1 32336175 32338024 -
2 domain predictions
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Lj3g3v3271550.1
n.a. Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| chr3 40213521 40218402 -
2 domain predictions
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Lj5g3v1427780.1
n.a. PREDICTED: acyl carrier protein 1, chloroplastic-like [Glycine max] gi|356535129|ref|XP_003536101.1| chr5 21296046 21298137 -
2 domain predictions
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Lj6g3v1918190.1
n.a. PREDICTED: acyl carrier protein 1, chloroplastic-like [Cicer arietinum] gi|502078834|ref|XP_004486070.1| chr6 21698084 21700396 -
2 domain predictions
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LotjaGi3g1v0292200.3
n.a. AMP-dependent synthetase and ligase family protein; TAIR: AT1G20480.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|B2HIM0|FAA28_MYCMM Long-chain-fatty-acid--AMP ligase FadD28; TrEMBL-Plants: tr|A0A0B2RJD7|A0A0B2RJD7_GLYSO Long-chain-fatty-acid--AMP ligase FadD28; Found in the gene: LotjaGi3g1v0292200 LjG1.1_chr3 59515704 59523564 -
2 domain predictions
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LotjaGi3g1v0496500.1
n.a. Acyl-CoA ligase-like; TAIR: AT1G20480.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|B2HIM0|FAA28_MYCMM Long-chain-fatty-acid--AMP ligase FadD28; TrEMBL-Plants: tr|A0A0B2QZ83|A0A0B2QZ83_GLYSO Long-chain-fatty-acid--AMP ligase FadD28; Found in the gene: LotjaGi3g1v0496500 LjG1.1_chr3 91454812 91462036 -
2 domain predictions
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LotjaGi4g1v0420700.1
n.a. Acyl carrier protein; TAIR: AT4G25050.1 acyl carrier protein 4; Swiss-Prot: sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic; TrEMBL-Plants: tr|I3T1G9|I3T1G9_LOTJA Acyl carrier protein; Found in the gene: LotjaGi4g1v0420700 LjG1.1_chr4 79592875 79594971 +
2 domain predictions
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LotjaGi5g1v0217100.1
n.a. Acyl carrier protein; TAIR: AT3G05020.1 acyl carrier protein 1; Swiss-Prot: sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic; TrEMBL-Plants: tr|I3T3K1|I3T3K1_LOTJA Acyl carrier protein; Found in the gene: LotjaGi5g1v0217100 LjG1.1_chr5 52320650 52323094 -
2 domain predictions
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LotjaGi6g1v0305200.1
n.a. Acyl carrier protein; TAIR: AT1G54630.1 acyl carrier protein 3; Swiss-Prot: sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic; TrEMBL-Plants: tr|I3SIS1|I3SIS1_LOTJA Acyl carrier protein; Found in the gene: LotjaGi6g1v0305200 LjG1.1_chr6 62255614 62258705 -
2 domain predictions
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