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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0217100 |
| Transcript ID | LotjaGi5g1v0217100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acyl carrier protein; TAIR: AT3G05020.1 acyl carrier protein 1; Swiss-Prot: sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic; TrEMBL-Plants: tr|I3T3K1|I3T3K1_LOTJA Acyl carrier protein; Found in the gene: LotjaGi5g1v0217100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52320650..52323094) extracted from Lotus japonicus Gifu genome v1.2.
CGCCCTTTCCACTTCACTCACTCACATCACGCTCTTCGCATTCTCTGCCACCTTCTAAATTCTCTCTCTCGTTTTGATTT TCTCTGCAGCGCAACCGCACCAACCACCTCCATGGCGACGAATGCGGCCACCGGAGCGACGTCACAATCCGTGCGCTCTC TCCGTCCTCACCTGAATCAGAGACTGGTATGAACGAACGAACTTCTTCATTTCCATGTCCGTTGCTTTCAATCGTAACTG CTATCATGCGCTTCAATAGTTCGATTTACTCTTACCTTTTCCGAAACGATCGATTCTCTCTGTGAATTTCTCTGAATTTG TCTTCTGCTTTTATGCTCATGCCGTTATTATCTGGAAACTAGAAAGTAGTTTTATCTGGATTCTCTGTGCGTGTGACAGC TTCGTTTCCAGAAATTATGCTTTGTGATCATACACGAGCATCTGTTTTTTGCTTTGATTGGTTACTGCTTTGTTCTAACT TGTCAAATATTGTGCATGTGTTGTACAAGCAAGGATCACCTACTTGTGTACAAGGTGTTTTTGTGGAAAGTTCAGGTTCT ATTGTAATTTCTAACTGATAATCGTGTTTTTTATATCGAAGAGAAACAGTAGGTGCTAAGATTTTTACTTGTTGCGCGCG AAACTGAATGATCCGGCTTAAGAAAGTGGATTAAGTGCTTATAGCATTTGCTTAATTGCACACTTTGAATTTGAACATTT AACTTGTGGTCACCTTAGCTCACTTTGCTAGTTTGCAAAACCATATTATGCCCCCCTGTCCTGTTTTATTAGTGGAGAGT TGCATTGAATCTGGAATTTTTTTACTAGAATATGTGAGATACTTAGCATATTTTTTTCTCCATCAGGTGAAAGCCAATAA TGCTAACGGCTAGGAAAGAGTTTACATTTTTTTTTCTTATATTAACCAAAAAGAACATTATTAGTATTTTTCTTGTTTTT CTTTTATGTTTTTTCTTTAATGAAGTATCATGTGTTGAACAGGCTTTCAATTCAACTGCTGGCCCTGCCTTAATTTCAAG CTATGGGAGAAGGAACCTTTCTCTTACCTCAAAGCCATACTCAATTCGACTTAGGGTTGCCTGCGCTGTAAGTAACTACT ACTGAAATGCTTCAGTTGTATTTAAATTTCTCCTGCACAGACACTGAAAATGTAATGAATAGTCAATTCTTTTAGGGACT GCATTTCATGAAGTCTTACAATTGGAAGCTGAGACAATGATTGATTAAAAGAATGTGAACCTAAGATCACTCATCTTAAT TTTCCTTTTTTAGTCAATGAGGGTCTTTCTTCTCCAATTCCCAATTCATATCAGTCTCATGGAGACTATGGCTAATAATC TCCACAATTTGTAAGATTGGAGATGGTTTTATTTTATCGATTCAAATTGCAGTGTCTACAAACTTTACATGATAGTAATA CTACTGATTTCATACAAGTAAAACTGTGAAGGTCTTTGACGTTTTTCTTGAAGAATTTTTTTAAGTAATTGAACCTTGTG TTTTATGAAATTTCAAAGAGACTTCATAAGACAATGTTTTATGCTGACAGTTTGGATCTGCTCTTTTTGTGCTTATGATG AATGTCTTAAGCAGGCTAAACCACAGACAGTTGAAAAGGTGTGCAAAATAGTAAAGAATCAATTGGCTTTACCAGATGAC TCTAATGTTACTGGCGAATCGAAATTTGCAGCTCTTGGAGCTGATTCACTAGACACGGTAATCAACATCTTGCTGGACAT CATAGTTGCATCTGCTTAGGATTTTTATAGCCAAGACACTTGTGTTGATTGTTGTGAATTTCATTTTCATGCCATGCTCT TTAGGTTGAGATTGTGATGGGACTCGAGGAAGAATTTGGTATCAGCGTTGAAGAGGAGAGTGCGCAGAGCATCTCAACAG TTCAAGACGCTGCCGATCTTATTGAGGAGATCATTAGTAAACAGAATCCTTAAACTAAAATGTACCCGATGGAAAACGTC TTTGGTGGACATGCATTGTTATCCATATTAGATATTAGTGTGGAGTAGTCAAGTGTTGAATGTTTTTATTTGCATGTTCT GCTTTTTCCTAGTTTCATTGGTCTAGTAAGAAAAACAAGTTAGCCGAGCCACTTGTTTGGTGGGAAATTTATGTGAATGG TGTGTGTGTATTTACATTAGGTAGGACTTATGAAAGTATGTTAATTAATGGTATTCAATGTTATTGAGCAGCAGCTGCCA TCACATAAAATTGCTGCACAACAATCAGCATTCAGCACCGGTAATTGCAGCATTTCCAATTATCTTCCTCTGTTACAAGT AAGATAGTTTAATCTGCACTTCAGGCAGGAAACCTGAATAATACCAAAGTGTATCTCATAAGTATCGGTTTCGTATGTTT TTCTCATCTGGAACTGTATCCTTCGTAAATATTGTGAAATGATTC
CDS sequence (LotjaGi5g1v0217100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGAATGCGGCCACCGGAGCGACGTCACAATCCGTGCGCTCTCTCCGTCCTCACCTGAATCAGAGACTGGCTTT CAATTCAACTGCTGGCCCTGCCTTAATTTCAAGCTATGGGAGAAGGAACCTTTCTCTTACCTCAAAGCCATACTCAATTC GACTTAGGGTTGCCTGCGCTGCTAAACCACAGACAGTTGAAAAGGTGTGCAAAATAGTAAAGAATCAATTGGCTTTACCA GATGACTCTAATGTTACTGGCGAATCGAAATTTGCAGCTCTTGGAGCTGATTCACTAGACACGGTTGAGATTGTGATGGG ACTCGAGGAAGAATTTGGTATCAGCGTTGAAGAGGAGAGTGCGCAGAGCATCTCAACAGTTCAAGACGCTGCCGATCTTA TTGAGGAGATCATTAGTAAACAGAATCCTTAA
Protein sequence (LotjaGi5g1v0217100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNAATGATSQSVRSLRPHLNQRLAFNSTAGPALISSYGRRNLSLTSKPYSIRLRVACAAKPQTVEKVCKIVKNQLALP DDSNVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEESAQSISTVQDAADLIEEIISKQNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 141 | 141 | 2.8E-53 | – | |
| PANTHER | 1 | 141 | 141 | 2.8E-53 | – | |
| Gene3D | 61 | 141 | 81 | 3.3E-24 | ||
| SUPERFAMILY | 63 | 140 | 78 | 2.62E-17 | ||
| ProSiteProfiles | 63 | 138 | 76 | 21.27 | ||
| TIGRFAM | 64 | 136 | 73 | 4.8E-24 | ||
| Hamap | 64 | 138 | 75 | 17.022 | ||
| SMART | 66 | 120 | 55 | 0.0076 | ||
| Pfam | 67 | 134 | 68 | 4.5E-11 | ||
| ProSitePatterns | 93 | 108 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Molecular function | Phosphopantetheine binding | Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate). |
Expression pattern of LotjaGi5g1v0217100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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