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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0305200 |
| Transcript ID | LotjaGi6g1v0305200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acyl carrier protein; TAIR: AT1G54630.1 acyl carrier protein 3; Swiss-Prot: sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic; TrEMBL-Plants: tr|I3SIS1|I3SIS1_LOTJA Acyl carrier protein; Found in the gene: LotjaGi6g1v0305200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62255614..62258705) extracted from Lotus japonicus Gifu genome v1.2.
AAAAACAAAAGGTTTGGGAGTTGAACCAAACGAAGGAAAGTTGAAACCCAGGGATAGGACGGAGAAAGCAAAGTTAACAA ACACCGTTTCGCACGTGCCGAACCTCGAAGGTAACGAAGCGAAACCCCAAAACCCCAACACTTTTGTGGCGTTGTTTCGT CCCTATAAATAGTTACAGTTTCCCATCACACTCGTGTCTTCCATTTCATTTCTGTCTCAAACACACACACTTCGTAGCCT CCGTCGTTCCGATCTCAGATCTCACTCCAATGGCTTCCCTCACCAGAGTCTCCATGTCCCTCTCTTCTCTCCCCAACCAA ACCCTGGTATGCTCCTTCACTCCATTTCACTGAATCTGTGTTTTTAGCTAATTTTCTCTATTTTTTTCTGGATTTTAGGG AATATTTTATGATTGCATTTGCTCTGCTTTCAATTTTTTGATTTCTAGACCATTTTCCTACGCAATTTTTATTTATTTCA TGGAATTTGAATCCTCTATATTGGATCAACTTAGATTGAACTTGTTTTGAGGAATTTATCTATTTTTTAGGTGGCTTATA AAATAAATCTAATTATTAGTATGATAGTGATTTGTTGAAATTTTGGTTGAAATGCATGATAGTGATTTGTTGATGGAATT GATTTTGTTGTTTAATTTAATGATTGTGAGTAGAAGATTAGGTGTGTTATATTTTGTGGTTGATTTAGACTCATTGAGTT GTTGTTGGATTTGAAAACAGGTTTCTGGTACCAGGTTTGCTAGCCCAAGTACAGTTTCACTTTCAATGAATGGGAGAATT TTCCCATCCATCACAATGCAGCCCAGGGCACCCCGCCTTCAAGTTGCATGTGCGGTAAGATTTGCTGCCATAAACCCTAT GTTTGTAATTGCCTTGCCAATGAGATAGGTTTGCTTGATTTAATCAATTCCATCATTTTGAATTCTAAATTCTTAATTTT TCATCCTTATACCATCTCCATGAAAAAAATCTACTATTATATGCTCATAATTATTGGTTGCGTGCTTAGAATTACAAAAT AACTAAAATATTTTTGGCCTGAACTGCATTCTGTTATATTTAGGATGTTATAAACTTATAATTAACATGTTTTTTTTCTC CAGGCCAAGCCAGAGACCGTGGAGAAGGTGTGTGCCATAGTCAAGAAGCAATTGGCATTGCCAGAGGATTCAACTGTCAC TGGAGAGTCCAAATTTACCACTCTTGGAGCTGATTCTCTTGACACGGTATTTTCATATTTATCTATGAATTATTGTTGTG GTGTCAAATCACAATACTGTAATCACTAAAAAGAACTCCAATTTTTGAGTATTTGTTGTACCTGATTGTTGCATCTATTA ACTATTTGTTATTTGAACTGCTCGCATTTCTTGCTGAGATTTTGTTTTCTCTTCCTCATGGTACAATCAAGAGTTTCTTT ACAAGTAGAAAGTGGTGATTGATTGCTATAAAACTGAGTGCTTGCAAGCTCTCATATCTGATTATATCATCCCATGATGC ATTTCTCCGGATAATTATGAAGATCATCCTTTTAGCGGCTGTTAGTTTCTCTGATATAAGTACATATAACACTATTCTAG ATTAATGATACATTGAAGCAAGCTATATTTAGTTCTTACTCTACACTCTCTACTTATTGTTCCCTGATAAAATGCCTCAG GTTTTCTATCTAGTTCTTATTTTACTGTTGTTGTGTCCATGATAATACACTGCAGGCTGTTTTAAGCAATTAGTTGCCTT CTTCCTTCAGCTTCACCCTATGTCATGCTTGACATGATTCTTTTTTTCTTTCTAAAATTTCAATGTTATGTTTCTAATGA AAATTGGATCGAACCTGAGACCTCCATACCTTTACCTTGCATGAGACTTACACACACTCTAGGCTATATGCTTAAATGGA ACGCCGAATACACTGTGGGCTGTGGTTTACATTATATGATCTTTTGCTTTGATTATTTAGACTTGCATTTGGTTTTTGAC TGAGTGTATTGATGTTTGTGGTCCATATTGCCTTTGATAAGAATTTTGTTGTTTGTTGTATTTAGACTTGCATTTTGAAT TTTGTGCAGGTTGAGATTGTGATGGGGCTTGAGGAGGAATTTGGCATTAGTGTGGAAGAAGAAAGTGCCCAGAGCATCGC CACCGTTCAAGATGCTGCTGATATGATTGATAAACTTCTTGAGAGCAAGGCTTAAATTAGCTAAGTGGACATAAAATGTC CAGTTTGGAGTTTAATTGTTTGTTTGATGGAAGGGGATTTTGATGTTTTAATTATATCTTTGGTATTTCAGTTCTATTCT TCAAGTGACTGCTAGATACTTTCTGAACCATATTTGGATTACTATATAGTTTTAATTTTGCAAAATTTGTGTTTCTTATA AAATCACATCCAAATAAGTATTCATTTCGTTCTCTATTTCAAAATTTGCGTCTCAACTTGCTAATAACACTATTCAAGGA AGCATAATAAGTATACACTTGCATGCCCACAAGTGTATCTCACAATTTTGTATGAGTATCACAAATTAAGTTAAATAGCT CTATTTATAATACCTTAGAGTTGTTTTAATAGCGTAATGCCTATAAATTTTGGGGGAAAAGCCTCTTGTCATTATTTCTC TCGCACTGTTTCTAGACTGCCAAATATACTGATCGCAATCAAATGTTTAGTATACTATCTTTTAATGCAAGTGGCATTGA GGTGCCTAGGACTGTTCATGGTTCGGTTCTTTGCTTGAACCGAACCGAACCTGAACCAAAATTTTGGTTCAAGAGAACGG AACCGAACCGATATAGTATGGTTCGAACCGAACCGAACCGGTTTCAAATTTTGGTTAACCAATTCGGTAAAATATGCATA TTTTAGATGGTTCGAACCGAACCGAACCGATATACTATGGTTCGAACCGAACCGAACCGAACCTGAATTGGTAGTTGATA TTTTGGTTCGGTTACCGAACCGGTTTTTCAATTTAGGTTCGAGTTCGGTTCGGTTCTTAAACGGTTCGGTTTTTGGTTCG ATTCTTGGTTAGCTTCGGTTCTCAGAGAACCATGAACAGTCCTAGAGGTGCC
CDS sequence (LotjaGi6g1v0305200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCCTCACCAGAGTCTCCATGTCCCTCTCTTCTCTCCCCAACCAAACCCTGGTTTCTGGTACCAGGTTTGCTAG CCCAAGTACAGTTTCACTTTCAATGAATGGGAGAATTTTCCCATCCATCACAATGCAGCCCAGGGCACCCCGCCTTCAAG TTGCATGTGCGGCCAAGCCAGAGACCGTGGAGAAGGTGTGTGCCATAGTCAAGAAGCAATTGGCATTGCCAGAGGATTCA ACTGTCACTGGAGAGTCCAAATTTACCACTCTTGGAGCTGATTCTCTTGACACGGTTGAGATTGTGATGGGGCTTGAGGA GGAATTTGGCATTAGTGTGGAAGAAGAAAGTGCCCAGAGCATCGCCACCGTTCAAGATGCTGCTGATATGATTGATAAAC TTCTTGAGAGCAAGGCTTAA
Protein sequence (LotjaGi6g1v0305200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLTRVSMSLSSLPNQTLVSGTRFASPSTVSLSMNGRIFPSITMQPRAPRLQVACAAKPETVEKVCAIVKKQLALPEDS TVTGESKFTTLGADSLDTVEIVMGLEEEFGISVEEESAQSIATVQDAADMIDKLLESKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 138 | 138 | 3.1E-56 | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 138 | 138 | 3.1E-56 | – | |
| Gene3D | 58 | 139 | 82 | 6.6E-25 | ||
| ProSiteProfiles | 60 | 135 | 76 | 22.046 | ||
| SUPERFAMILY | 60 | 136 | 77 | 3.66E-17 | ||
| Hamap | 61 | 135 | 75 | 16.822 | ||
| TIGRFAM | 61 | 133 | 73 | 4.7E-24 | ||
| SMART | 63 | 135 | 73 | 0.0023 | ||
| Pfam | 64 | 131 | 68 | 5.3E-11 | ||
| ProSitePatterns | 90 | 105 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Molecular function | Phosphopantetheine binding | Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate). |
Expression pattern of LotjaGi6g1v0305200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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