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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0420700 |
| Transcript ID | LotjaGi4g1v0420700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acyl carrier protein; TAIR: AT4G25050.1 acyl carrier protein 4; Swiss-Prot: sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic; TrEMBL-Plants: tr|I3T1G9|I3T1G9_LOTJA Acyl carrier protein; Found in the gene: LotjaGi4g1v0420700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79592875..79594971) extracted from Lotus japonicus Gifu genome v1.2.
TCTGACATTCTTAGAGCAATGTGCACCACTCGTTCATTCCAATTCCACTTTCTTCTTGACATGGCTTCACTTTCCAAATA AGCACCAACTAGATCAGATACCTATCTTATTATCACTATCAATTCACAAACCCAATCCCTAGCTCTTATTCCCCTGTGTT CCCTCCTCTTTGCACCTTGCCTAAGCTTCAATGGCCTCTGTTTCAGCCACTTCTGTTAGCCTCCAACCCTCTTTCAAGTT GTCTAGCCAGGTTCATATCTCATAACTCCCCTCTCTTAATGCATGCATACCCTGCTTATATTCTTATCTCTAGACTTCAA CAGGTTCATGTGCTTTGCAATGATATGGTTTTGGTATTTGTGAAAGCATGAAGTTACTTACTTAAAGTTTCACCATAAAA AAGTACTTGAATTTTCCCATATTATTATTATACTTGTTCTGTATTCTTTCAAGGCACACTAGCATAATTCATTAGGATAA GGAAGTTTCTATTAGATGAGAGCCCTATATGATATGAAGCATTCAGTACAAAATATGTATTGATTTAACCAATGAGATGC TTGTTAGAATACATAATGGAGTGAATAAACATCTAAAAATGCCTTTTTTTGTACATATCATGCATTTCTATTCATATCAA TCCACTTTGATATACTTGATTAATTAGGATTTTCTAGGTAATATGATTGTTGCCATATTTTCCCTGAGCTCTACTTTTTA GTGCATGGTTGGAAACCATTCTACGATTGATTCTAAATCCAAAATTCATTCTGTGAAGAAGCTTTTGTAAGTAGCTTCTG ATTTCAGAATTGATTATGAGGAAACAGAAACTGGTCCAAACATGCTATTAATGAGGTAACTAATTAGTAGTAAGAAACTT GATTTGGGTGCTCAAAACATGCAGGTTTCTTCCAGAATTTCAGGTTTGAGGGCAGTTTCTGTGGGATGGACCACGAGGAG ATTTCCTTCTTTGAGATCCTCTCGGTTCCGCATTTGTGCAGTAAGATTGATTCTCTTCAAAGTACATTTTCATCCACCTA AAAAAATTGCAAGAAACAAAAATAACTTTTTTGAGTTTTGTCAAAGGTCCAGGCACAGCCTGAGACAATGGAGAAAGTGT GCAAGATTGTGAGGAAACAACTTGCTCTCGCCCCGGAATCTGAGCTTACCCCAGAAACCAAGTTTTCAGCACTTGGTGCT GATTCCCTTGACACTGTAAGATTCTAATTGCCTTCTTAGTTTTGATTTAGATGGTCCTGTTGGTTGATTAAATTTAACAA CGCTATTTTATAGTATGTTTGGATCAACTTCTTTTTTGTCAGAATCGATTCTGGCACCAAGAAACTACTCAGAGATGCTT CTCTCCAGAATTGGTTTTGACTTTATAATCAATTATAATAGAAAAAATTTCGAACATGCACTTAAACATCTGTGTTGCTG ATGCTAGAGCTAAGATCTTTTTTAATTGACTGCGGCAGGTTGAAATAGTGATGGGTTTAGAGGAAGAATTTGGAATTAAT GTTACAGATGATGGAGCTGAAAACATCACAACTGTTCAAGAAGCAGCTGATTTAATAGAGGGCTTGATTCAAAAGAAAGA TTGAGGTAATTAGGAGGTGAACCAAGTTGAAGTTCTAGGAAATGGATTGAGAGGAGAAGTGCCATTTTTATGTTATTTTT ATGTTTTTGCATATTCTTTAGGAAGCAGATTGAAATTTTCCCATTGTAACTTTGTTCAACTTGCTATTTGTTGTAAGTTT TGATCACAGACGCCTTGTTTTTTTGGTCTTAAGATGAGGATCTCACTTGATTTTGGAGGGCAAGATCTTAGTTGATGTTT GTTCTATTGCTGTTCTTCAAGTGCTTAATTTTTGTTTGTTCTATAAACTTTCCCCTAGAAGGATTTGCATAGTATTTTCC AAACTGGAAAAGTACAAGGAATTCACATCTTCCTTTTAGCTTCCTTTTTTTGCATTTATATTGCCAATAATTTGCTTTAT AAAAAGCGTTCGGTTAAATTTTATATAAAATGATGTGCTAAAGTCCATTTGCATTAGTGCCATCAAATGTCTAAACATAA GATTAGCGTGTTGATTA
CDS sequence (LotjaGi4g1v0420700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTGTTTCAGCCACTTCTGTTAGCCTCCAACCCTCTTTCAAGTTGTCTAGCCAGGTTTCTTCCAGAATTTCAGG TTTGAGGGCAGTTTCTGTGGGATGGACCACGAGGAGATTTCCTTCTTTGAGATCCTCTCGGTTCCGCATTTGTGCAGTCC AGGCACAGCCTGAGACAATGGAGAAAGTGTGCAAGATTGTGAGGAAACAACTTGCTCTCGCCCCGGAATCTGAGCTTACC CCAGAAACCAAGTTTTCAGCACTTGGTGCTGATTCCCTTGACACTGTTGAAATAGTGATGGGTTTAGAGGAAGAATTTGG AATTAATGTTACAGATGATGGAGCTGAAAACATCACAACTGTTCAAGAAGCAGCTGATTTAATAGAGGGCTTGATTCAAA AGAAAGATTGA
Protein sequence (LotjaGi4g1v0420700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASVSATSVSLQPSFKLSSQVSSRISGLRAVSVGWTTRRFPSLRSSRFRICAVQAQPETMEKVCKIVRKQLALAPESELT PETKFSALGADSLDTVEIVMGLEEEFGINVTDDGAENITTVQEAADLIEGLIQKKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 6.0E-62 | – | |
| PANTHER | 1 | 135 | 135 | 6.0E-62 | – | |
| Gene3D | 55 | 136 | 82 | 6.7E-25 | ||
| SUPERFAMILY | 56 | 132 | 77 | 7.46E-19 | ||
| ProSiteProfiles | 57 | 132 | 76 | 23.021 | ||
| TIGRFAM | 58 | 130 | 73 | 3.4E-24 | ||
| Hamap | 58 | 132 | 75 | 17.309 | ||
| SMART | 60 | 132 | 73 | 0.0024 | ||
| Pfam | 61 | 128 | 68 | 1.5E-12 | ||
| ProSitePatterns | 87 | 102 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Molecular function | Phosphopantetheine binding | Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate). |
Expression pattern of LotjaGi4g1v0420700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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